PDB: 72678 resultsInfo pagesStatus searchChemie searchBIRD

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3TP2	Crystal Structure of the Splicing Factor Cwc2 from yeast Descriptor: Pre-mRNA-splicing factor CWC2, SODIUM ION, ZINC ION Authors: Schmitzova, J. Deposit date: 2011-09-07 Release date: 2012-03-14 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal structure of Cwc2 reveals a novel architecture of a multipartite RNA-binding protein. Embo J., 31, 2012
2E9Z	Foot-and-mouth disease virus RNA-polymerase in complex with a template- primer RNA, ATP and UTP Descriptor: 5'-R(*CP*AP*UP*GP*GP*GP*CP*CP*C)-3', 5'-R(*GP*GP*GP*CP*CP*CP*A)-3', MAGNESIUM ION, ... Authors: Ferrer-Orta, C, Arias, A, Perez-Luque, R, Escarmis, C, Domingo, E, Verdaguer, N. Deposit date: 2007-01-29 Release date: 2007-06-26 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (3 Å) Cite: Sequential structures provide insights into the fidelity of RNA replication Proc.Natl.Acad.Sci.Usa, 104, 2007
6UEJ	Crystal structure of human zinc finger antiviral protein bound to RNA Descriptor: RNA (5'-R(P*UP*CP*G)-3'), SPERMINE, ZINC ION, ... Authors: Meagher, J.L, Smith, J.L. Deposit date: 2019-09-21 Release date: 2019-11-13 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.21 Å) Cite: Structure of the zinc-finger antiviral protein in complex with RNA reveals a mechanism for selective targeting of CG-rich viral sequences. Proc.Natl.Acad.Sci.USA, 116, 2019
7QTN	Duplex RNA containing Xanthosine-Cytosine base pairs Descriptor: RNA (5'-R(*GP*GP*UP*AP*(RY)P*UP*GP*CP*GP*(XAN)P*UP*AP*CP*C)-3'), RNA (5'-R(*GP*GP*UP*AP*CP*UP*GP*CP*GP*(XAM)P*UP*AP*CP*C)-3') Authors: Ennifar, E, Micura, R. Deposit date: 2022-01-14 Release date: 2023-01-25 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Towards a comprehensive understanding of RNA deamination: synthesis and properties of xanthosine-modified RNA. Nucleic Acids Res., 50, 2022
2CKW	The 2.3 A resolution structure of the Sapporo virus RNA dependant RNA polymerase. Descriptor: RNA-DIRECTED RNA POLYMERASE Authors: Fullerton, S.W.B, Tucker, P.A, Rohayem, J, Coutard, B, Gebhardt, J, Gorbalenya, A, Canard, B. Deposit date: 2006-04-24 Release date: 2006-11-29 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural and Functional Characterization of Sapovirus RNA-Dependent RNA Polymerase. J.Virol., 81, 2007
6I1W	Structure of the RNA duplex containing pseudouridine residue (5'-Gp(PSU)pC-3' sequence context) Descriptor: RNA (5'-R(*AP*CP*UP*GP*AP*CP*UP*GP*A)-3'), RNA (5'-R(*UP*CP*AP*GP*(PSU)P*CP*AP*GP*U)-3') Authors: Deb, I, Popenda, L, Sarzynska, J, Gdaniec, Z. Deposit date: 2018-10-30 Release date: 2019-11-20 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Computational and NMR studies of RNA duplexes with an internal pseudouridine-adenosine base pair. Sci Rep, 9, 2019
6I1V	Structure of the RNA duplex containing pseudouridine residue (5'-Cp(PSU)pG-3' sequence context) Descriptor: RNA (5'-R(*AP*CP*UP*CP*AP*GP*UP*GP*A)-3'), RNA (5'-R(*UP*CP*AP*CP*(PSU)P*GP*AP*GP*U)-3') Authors: Deb, I, Popenda, L, Sarzynska, J, Gdaniec, Z. Deposit date: 2018-10-30 Release date: 2019-11-20 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Computational and NMR studies of RNA duplexes with an internal pseudouridine-adenosine base pair. Sci Rep, 9, 2019
8TNS	Solution structure of poly(UG) RNA (GU)12 G-quadruplex Descriptor: RNA (5'-R(*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*U)-3') Authors: Escobar, C.A, Petersen, R, Butcher, S.E. Deposit date: 2023-08-02 Release date: 2023-11-15 Last modified: 2024-05-15 Method: SOLUTION NMR, SOLUTION SCATTERING Cite: Solution Structure of Poly(UG) RNA. J.Mol.Biol., 435, 2023
6L5M	Crystal structure of human DEAD-box RNA helicase DDX21 in complex with AMP Descriptor: ADENOSINE MONOPHOSPHATE, Nucleolar RNA helicase 2 Authors: Chen, Z.J, Hu, X.J, Zhou, Z, Li, J.X. Deposit date: 2019-10-24 Release date: 2020-06-17 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural Basis of Human Helicase DDX21 in RNA Binding, Unwinding, and Antiviral Signal Activation. Adv Sci, 7, 2020
6L5L	Crystal structure of human DEAD-box RNA helicase DDX21 at apo state Descriptor: MAGNESIUM ION, Nucleolar RNA helicase 2 Authors: Chen, Z.J, Hu, X.J, Zhou, Z, Li, J.X. Deposit date: 2019-10-24 Release date: 2020-06-17 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structural Basis of Human Helicase DDX21 in RNA Binding, Unwinding, and Antiviral Signal Activation. Adv Sci, 7, 2020
6L5O	Crystal structure of human DEAD-box RNA helicase DDX21 at post-hydrolysis state Descriptor: ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ... Authors: Chen, Z.J, Hu, X.J, Zhou, Z, Li, J.X. Deposit date: 2019-10-24 Release date: 2020-06-17 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural Basis of Human Helicase DDX21 in RNA Binding, Unwinding, and Antiviral Signal Activation. Adv Sci, 7, 2020
6F5P	A mechanism for the activation of the influenza virus transcriptase Descriptor: ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA, DNA-directed RNA polymerase subunit, MAGNESIUM ION, ... Authors: Serna Martin, I, Grimes, J.M. Deposit date: 2017-12-02 Release date: 2018-09-19 Method: X-RAY DIFFRACTION (4.14 Å) Cite: A Mechanism for the Activation of the Influenza Virus Transcriptase. Mol. Cell, 70, 2018
7KQN	Ternary complex of TERT (telomerase reverse transcriptase) with RNA template, DNA primer, an incoming dGTP and a downstream hybrid duplex Descriptor: 1,2-ETHANEDIOL, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ... Authors: Choi, W.S, Weng, P.J, Yang, W. Deposit date: 2020-11-17 Release date: 2022-03-23 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.02 Å) Cite: Flexibility of telomerase in binding the RNA template and DNA telomeric repeat. Proc.Natl.Acad.Sci.USA, 119, 2022
7KW8	NMR Structure of a tRNA 2'-phosphotransferase from Runella slithyformis Descriptor: tRNA 2'-phosphotransferase Authors: Alphonse, S, Dantuluri, S, Banerjee, A, Shuman, S, Ghose, R. Deposit date: 2020-11-30 Release date: 2021-10-13 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: NMR solution structures of Runella slithyformis RNA 2'-phosphotransferase Tpt1 provide insights into NAD+ binding and specificity. Nucleic Acids Res., 49, 2021
6F5O	A mechanism for the activation of the influenza virus transcriptase Descriptor: 3' promoter vRNA, 5' promoter vRNA, Polymerase acidic protein, ... Authors: Serna Martin, I, Grimes, J.M. Deposit date: 2017-12-02 Release date: 2018-06-27 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (9.8 Å) Cite: A Mechanism for the Activation of the Influenza Virus Transcriptase. Mol. Cell, 70, 2018
5HAB	Crystal structure of mpy-RNase J (mutant H84A), an archaeal RNase J from Methanolobus psychrophilus R15, complex with RNA Descriptor: RNA (5'-R(P*AP*AP*AP*AP*A)-3'), Ribonuclease J, SULFATE ION Authors: Li, D.F, Feng, N. Deposit date: 2015-12-30 Release date: 2017-01-04 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Molecular insights into catalysis and processive exonucleolytic mechanisms of prokaryotic RNase J revealing striking parallels with that of eukaryotic Xrn1 To Be Published
7UFI	VchTnsC AAA+ ATPase with DNA, single heptamer Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA (5'-D(P*CP*TP*CP*CP*AP*GP*TP*AP*CP*AP*GP*CP*GP*CP*GP*GP*CP*TP*GP*AP*A)-3'), DNA (5'-D(P*TP*TP*CP*AP*GP*CP*CP*GP*CP*GP*CP*TP*GP*TP*AP*CP*TP*GP*GP*AP*G)-3'), ... Authors: Fernandez, I.S, Sternberg, S.H. Deposit date: 2022-03-22 Release date: 2022-06-08 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Selective TnsC recruitment enhances the fidelity of RNA-guided transposition. Nature, 609, 2022
7UFM	VchTnsC AAA+ with DNA (double heptamer) Descriptor: ADENOSINE-5'-TRIPHOSPHATE, DNA (36-MER), VchTnsC Authors: Fernandez, I.S, Sternberg, S.H. Deposit date: 2022-03-22 Release date: 2022-06-08 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Selective TnsC recruitment enhances the fidelity of RNA-guided transposition. Nature, 609, 2022
5AY4	Crystal structure of RNA duplex containing C-C base pairs obtained in the presence of Hg(II) Descriptor: RNA (5'-R(*GP*GP*AP*CP*UP*(CBR)P*GP*AP*CP*UP*CP*C)-3'), SODIUM ION Authors: Kondo, J, Tada, Y, Dairaku, T, Saneyoshi, H, Okamoto, I, Tanaka, Y, Ono, A. Deposit date: 2015-08-06 Release date: 2015-10-21 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.7 Å) Cite: High-Resolution Crystal Structure of a Silver(I)-RNA Hybrid Duplex Containing Watson-Crick-like CSilver(I)C Metallo-Base Pairs Angew.Chem.Int.Ed.Engl., 54, 2015
5AY2	Crystal structure of RNA duplex containing C-Ag(I)-C base pairs Descriptor: RNA (5'-R(*GP*GP*AP*CP*UP*(CBR)P*GP*AP*CP*UP*CP*C)-3'), SILVER ION Authors: Kondo, J, Tada, Y, Dairaku, T, Saneyoshi, H, Okamoto, I, Tanaka, Y, Ono, A. Deposit date: 2015-08-06 Release date: 2015-10-21 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.3 Å) Cite: High-Resolution Crystal Structure of a Silver(I)-RNA Hybrid Duplex Containing Watson-Crick-like CSilver(I)C Metallo-Base Pairs Angew.Chem.Int.Ed.Engl., 54, 2015
5AY3	Crystal structure of RNA duplex containing C-C base pairs Descriptor: RNA (5'-R(*GP*GP*AP*CP*UP*(CBR)P*GP*A*CP*UP*CP*C)-3') Authors: Kondo, J, Tada, Y, Dairaku, T, Saneyoshi, H, Okamoto, I, Tanaka, Y, Ono, A. Deposit date: 2015-08-06 Release date: 2015-10-21 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.2 Å) Cite: High-Resolution Crystal Structure of a Silver(I)-RNA Hybrid Duplex Containing Watson-Crick-like CSilver(I)C Metallo-Base Pairs Angew.Chem.Int.Ed.Engl., 54, 2015
6VVJ	Cap1G-TPUA Descriptor: RNA (130-MER) Authors: Summers, M.F, Brown, J.D. Deposit date: 2020-02-18 Release date: 2020-04-29 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural basis for transcriptional start site control of HIV-1 RNA fate. Science, 368, 2020
3P1Y	Crystal structure of the chimeric Archaeoglobus fulgidus RNA splicing endonuclease with the broadest substrate specificity Descriptor: tRNA-splicing endonuclease Authors: Hirata, A. Deposit date: 2010-10-01 Release date: 2011-08-10 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Cleavage of intron from the standard or non-standard position of the precursor tRNA by the splicing endonuclease of Aeropyrum pernix, a hyper-thermophilic Crenarchaeon, involves a novel RNA recognition site in the Crenarchaea specific loop Nucleic Acids Res., 39, 2011
8BCD	Human Brr2 Helicase Region in complex with C-tail deleted Jab1 and compound 50 Descriptor: Pre-mRNA-processing-splicing factor 8, U5 small nuclear ribonucleoprotein 200 kDa helicase, phenylsulfonylcarbamodithioic acid Authors: Vester, K, Loll, B, Wahl, M.C. Deposit date: 2022-10-15 Release date: 2023-03-08 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Conformation-dependent ligand hot spots in the spliceosomal RNA helicase BRR2. Acta Crystallogr D Struct Biol, 79, 2023
6HMI	Solution structure of the RNA duplex formed by the 5'-end of U1snRNA and the 5'-splice site of SMN2 exon7 Descriptor: RNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), RNA (5'-R(*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3') Authors: Campagne, S, Allain, F.H. Deposit date: 2018-09-12 Release date: 2019-08-14 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: Structural basis of a small molecule targeting RNA for a specific splicing correction. Nat.Chem.Biol., 15, 2019

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