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2DYR
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Bovine heart cytochrome C oxidase at the fully oxidized state
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
Authors:Shinzawa-Itoh, K, Aoyama, H, Muramoto, K, Kurauchi, T, Mizushima, T, Yamashita, E, Tsukihara, T, Yoshikawa, S.
Deposit date:2006-09-16
Release date:2007-04-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structures and physiological roles of 13 integral lipids of bovine heart cytochrome c oxidase
Embo J., 26, 2007
2DYS
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BU of 2dys by Molmil
Bovine heart cytochrome C oxidase modified by DCCD
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
Authors:Shinzawa-Itoh, K, Aoyama, H, Muramoto, K, Kurauchi, T, Mizushima, T, Yamashita, E, Tsukihara, T, Yoshikawa, S.
Deposit date:2006-09-16
Release date:2007-04-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures and physiological roles of 13 integral lipids of bovine heart cytochrome c oxidase
Embo J., 26, 2007
2DYT
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BU of 2dyt by Molmil
The crystal structure of Saccharomyces cerevisiae Atg3
Descriptor: Autophagy-related protein 3, SULFATE ION
Authors:Yamada, Y, Suzuki, N.N, Inagaki, F.
Deposit date:2006-09-17
Release date:2007-01-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The crystal structure of Atg3, an autophagy-related ubiquitin carrier protein (E2) enzyme that mediates Atg8 lipidation
J.Biol.Chem., 282, 2007
2DYU
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BU of 2dyu by Molmil
Helicobacter pylori formamidase AmiF contains a fine-tuned cysteine-glutamate-lysine catalytic triad
Descriptor: Formamidase
Authors:Wang, W.C, Hung, C.L.
Deposit date:2006-09-18
Release date:2007-02-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of Helicobacter pylori formamidase AmiF reveals a cysteine-glutamate-lysine catalytic triad
J.Biol.Chem., 282, 2007
2DYV
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BU of 2dyv by Molmil
Helicobacter pylori formamidase AmiF contains a fine-tuned cysteine-glutamate-lysine catalytic triad
Descriptor: Formamidase
Authors:Wang, W.C, Hung, C.L.
Deposit date:2006-09-18
Release date:2007-02-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of Helicobacter pylori formamidase AmiF reveals a cysteine-glutamate-lysine catalytic triad
J.Biol.Chem., 282, 2007
2DYW
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BU of 2dyw by Molmil
A Backbone binding DNA complex
Descriptor: (6-AMINOHEXYLAMINE)(TRIAMMINE) PLATINUM(II) COMPLEX, 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', SODIUM ION, ...
Authors:Komeda, S, Moulaei, T, Woods, K.K, Chikuma, M, Farrell, N.P, Williams, L.D.
Deposit date:2006-09-18
Release date:2007-01-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:A Third Mode of DNA Binding: Phosphate Clamps by a Polynuclear Platinum Complex
J.Am.Chem.Soc., 128, 2006
2DYX
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BU of 2dyx by Molmil
Structure of the complex of lactoferrin C-lobe with melibiose at 2.0 A resolution
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CARBONATE ION, FE (III) ION, ...
Authors:Mir, R, Prem kumar, R, Sinha, M, Singh, N, Sharma, S, Kaur, P, Bhushan, A, Singh, T.P.
Deposit date:2006-09-19
Release date:2006-10-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of the complex of lactoferrin C-lobe with melibiose at 2.0 A resolution
To be Published
2DYY
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Crystal structure of putative translation initiation inhibitor PH0854 from Pyrococcus horikoshii
Descriptor: UPF0076 protein PH0854
Authors:Ihsanawati, Kishishita, S, Murayama, K, Chen, L, Liu, Z.J, Wang, B.C, Shirouzu, M, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-19
Release date:2007-03-19
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of putative translation initiation inhibitor PH0854 from Pyrococcus horikoshii
To be Published
2DZ7
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BU of 2dz7 by Molmil
DNA Octaplex Formation with an I-Motif of A-Quartets: The Revised Crystal Structure of d(GCGAAAGC)
Descriptor: DNA (5'-D(*DGP*DCP*DGP*DAP*DAP*DAP*DGP*DC)-3'), MAGNESIUM ION
Authors:Sato, Y, Mitomi, K, Sumani, T, Kondo, J, Takenaka, A.
Deposit date:2006-09-21
Release date:2007-08-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:DNA octaplex formation with an I-motif of water-mediated A-quartets: reinterpretation of the crystal structure of d(GCGAAAGC)
J.Biochem.(Tokyo), 140, 2006
2DZ9
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BU of 2dz9 by Molmil
Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Complexed with biotinyl-5'-AMP, Mutation D104A
Descriptor: BIOTINYL-5-AMP, biotin--[acetyl-CoA-carboxylase] ligase
Authors:Bagautdinov, B, Matsuura, Y, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-26
Release date:2007-03-26
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Ligand Structures Of Biotin Protein Ligase From Pyrococcus Horikoshii Ot3
To be Published
2DZA
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BU of 2dza by Molmil
Crystal Structure of Dihydropteroate Synthase from Thermus thermophilus HB8 in Complex with 4-aminobenzoate
Descriptor: 4-AMINOBENZOIC ACID, Dihydropteroate synthase
Authors:Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-27
Release date:2007-03-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of Dihydropteroate Synthase (FolP) from Thermus thermophilus HB8
To be Published
2DZB
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BU of 2dzb by Molmil
Crystal Structure of Dihydropteroate Synthase from Thermus thermophilus HB8 in complex with 6HMPPP
Descriptor: 6-HYDROXYMETHYLPTERIN-DIPHOSPHATE, Dihydropteroate synthase
Authors:Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-27
Release date:2007-03-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of Dihydropteroate Synthase (FolP) from Thermus thermophilus HB8
To be Published
2DZC
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BU of 2dzc by Molmil
Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii, Mutation R48A
Descriptor: biotin--[acetyl-CoA-carboxylase] ligase
Authors:Bagautdinov, B, Taketa, M, Matsuura, Y, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-27
Release date:2007-03-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Protein biotinylation visualized by a complex structure of biotin protein ligase with a substrate
J.Biol.Chem., 283, 2008
2DZD
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BU of 2dzd by Molmil
Crystal structure of the biotin carboxylase domain of pyruvate carboxylase
Descriptor: pyruvate carboxylase
Authors:Kondo, S, Nakajima, Y, Sugio, S, Sueda, S, Islam, M.N, Kondo, H.
Deposit date:2006-09-27
Release date:2007-09-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the biotin carboxylase domain of pyruvate carboxylase from Bacillus thermodenitrificans
ACTA CRYSTALLOGR.,SECT.D, 63, 2007
2DZE
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BU of 2dze by Molmil
Crystal structure of histone chaperone Asf1 in complex with a C-terminus of histone H3
Descriptor: 10-mer peptide from Histone H3.1/H3.2, Histone chaperone cia1, TRIETHYLENE GLYCOL
Authors:Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-28
Release date:2007-10-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of histone chaperone Asf1 in complex with a C-terminus of histone H3
To be Published
2DZI
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BU of 2dzi by Molmil
2DZI/Solution Structure of the N-terminal Ubiquitin-like Domain in Human Ubiquitin-like Protein 4A (GDX)
Descriptor: Ubiquitin-like protein 4A
Authors:Zhao, C, Sato, M, Koshiba, S, Watanabe, S, Harada, T, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-29
Release date:2007-03-29
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:2DZI/Solution Structure of the N-terminal Ubiquitin-like Domain in Human Ubiquitin-like Protein 4A (GDX)
To be Published
2DZJ
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BU of 2dzj by Molmil
2DZJ/Solution Structure of the N-terminal Ubiquitin-like Domain in Human Synaptic Glycoprotein SC2
Descriptor: Synaptic glycoprotein SC2
Authors:Zhao, C, Yoneyama, M, Koshiba, S, Watanabe, S, Harada, T, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-29
Release date:2007-03-29
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:2DZJ/Solution Structure of the N-terminal Ubiquitin-like Domain in Human Synaptic Glycoprotein SC2
To be Published
2DZK
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BU of 2dzk by Molmil
Structure of the UBX domain in Mouse UBX Domain-Containing Protein 2
Descriptor: UBX domain-containing protein 2
Authors:Zhao, C, Yoneyama, M, Koshiba, S, Watanabe, S, Harada, T, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-29
Release date:2007-03-29
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structure of the UBX domain in Mouse UBX Domain-Containing Protein 2
To be Published
2DZL
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BU of 2dzl by Molmil
Solution Structure of the UBA domain in Human Protein FAM100B
Descriptor: Protein FAM100B
Authors:Zhao, C, Sato, M, Koshiba, S, Watanabe, S, Harada, T, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-29
Release date:2007-03-29
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution Structure of the UBA domain in Human Protein FAM100B
To be Published
2DZM
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BU of 2dzm by Molmil
Solution Structure of the Ubiquitin-like Domain in Human FAS-associated factor 1 (hFAF1)
Descriptor: FAS-associated factor 1
Authors:Zhao, C, Sato, M, Koshiba, S, Watanabe, S, Harada, T, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-29
Release date:2007-10-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution Structure of the Ubiquitin-like Domain in Human FAS-associated factor 1 (hFAF1)
To be Published
2DZN
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BU of 2dzn by Molmil
Crystal structure analysis of yeast Nas6p complexed with the proteasome subunit, rpt3
Descriptor: 26S protease regulatory subunit 6B homolog, Probable 26S proteasome regulatory subunit p28
Authors:Yokoyama, S, Padmanabhan, B, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-29
Release date:2007-07-17
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural basis for the recognition between the regulatory particles Nas6 and Rpt3 of the yeast 26S proteasome
Biochem.Biophys.Res.Commun., 359, 2007
2DZO
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BU of 2dzo by Molmil
Crystal structure analysis of yeast Nas6p complexed with the proteasome subunit, rpt3
Descriptor: 26S protease regulatory subunit 6B homolog, Probable 26S proteasome regulatory subunit p28
Authors:Nakamura, Y, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-29
Release date:2007-10-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal structure analysis of yeast Nas6p complexed with the proteasome subunit, rpt3
To be Published
2DZP
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BU of 2dzp by Molmil
Structure of mutant tryptophan synthase alpha-subunit (D17N) from a hyperthermophile, Pyrococcus furiosus
Descriptor: Tryptophan synthase alpha chain
Authors:Ogasahara, K, Yamagata, Y, Yutani, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-30
Release date:2007-08-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of mutant tryptophan synthase alpha-subunits from a hyperthermophile, Pyrococcus furiosus
To be Published
2DZQ
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BU of 2dzq by Molmil
Solution Structure of RSGI RUH-066, a GTF2I domain in human cDNA
Descriptor: General transcription factor II-I repeat domain-containing protein 1
Authors:Doi-Katayama, Y, Hirota, H, Tomizawa, T, Koshiba, S, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-30
Release date:2007-03-30
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution Structure of RSGI RUH-066, a GTF2I domain in human cDNA
To be published
2DZR
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BU of 2dzr by Molmil
Solution Structure of RSGI RUH-067, a GTF2I domain in human cDNA
Descriptor: General transcription factor II-I repeat domain-containing protein 1
Authors:Doi-Katayama, Y, Hirota, H, Muto, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-30
Release date:2007-03-30
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution Structure of RSGI RUH-067, a GTF2I domain in human cDNA
To be published

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