Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4MB1
DownloadVisualize
BU of 4mb1 by Molmil
The Structure of MalL mutant enzyme G202P from Bacillus subtilus
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, Oligo-1,6-glucosidase 1
Authors:Hobbs, J.K, Jiao, W, Easter, A.D, Parker, E.J, Schipper, L.A, Arcus, V.L.
Deposit date:2013-08-19
Release date:2013-09-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Change in heat capacity for enzyme catalysis determines temperature dependence of enzyme catalyzed rates.
Acs Chem.Biol., 8, 2013
3G2E
DownloadVisualize
BU of 3g2e by Molmil
Structure of putative OORC subunit of 2-oxoglutarate:acceptor oxidoreductase from Campylobacter jejuni
Descriptor: GLYCEROL, OORC subunit of 2-oxoglutarate:acceptor oxidoreductase
Authors:Ramagopal, U.A, Toro, R, Miller, S, Gilmore, M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-01-31
Release date:2009-03-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of putative OORC subunit of 2-oxoglutarate:acceptor oxidoreductase from Campylobacter jejuni
To be Published
2GR0
DownloadVisualize
BU of 2gr0 by Molmil
Crystal structure of Ferredoxin reductase, BphA4 (oxidized form, NAD+ complex)
Descriptor: ADENOSINE-5'-DIPHOSPHATE, FLAVIN-ADENINE DINUCLEOTIDE, ferredoxin reductase
Authors:Senda, T, Senda, M.
Deposit date:2006-04-22
Release date:2007-05-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Molecular Mechanism of the Redox-dependent Interaction between NADH-dependent Ferredoxin Reductase and Rieske-type [2Fe-2S] Ferredoxin
J.Mol.Biol., 373, 2007
4TMZ
DownloadVisualize
BU of 4tmz by Molmil
Translation initiation factor eIF5B (517-858) from C. thermophilum, bound to GTPgammaS and potassium
Descriptor: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE, CHLORIDE ION, GLYCEROL, ...
Authors:Kuhle, B, Ficner, R.
Deposit date:2014-06-02
Release date:2014-09-24
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:A monovalent cation acts as structural and catalytic cofactor in translational GTPases.
Embo J., 33, 2014
5ZLT
DownloadVisualize
BU of 5zlt by Molmil
Crystal structure of UDP-GlcNAc 2-epimerase NeuC complexed with UDP
Descriptor: GDP/UDP-N,N'-diacetylbacillosamine 2-epimerase (Hydrolyzing), SULFATE ION, URIDINE-5'-DIPHOSPHATE
Authors:Ko, T.P, Hsieh, T.J, Yang, C.S, Chen, Y.
Deposit date:2018-03-29
Release date:2018-05-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The tetrameric structure of sialic acid-synthesizing UDP-GlcNAc 2-epimerase fromAcinetobacter baumannii: A comparative study with human GNE.
J. Biol. Chem., 293, 2018
4TNJ
DownloadVisualize
BU of 4tnj by Molmil
RT XFEL structure of Photosystem II 500 ms after the 2nd illumination (2F) at 4.5 A resolution
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
Authors:Kern, J, Tran, R, Alonso-Mori, R, Koroidov, S, Echols, N, Hattne, J, Ibrahim, M, Gul, S, Laksmono, H, Sierra, R.G, Gildea, R.J, Han, G, Hellmich, J, Lassalle-Kaiser, B, Chatterjee, R, Brewster, A, Stan, C.A, Gloeckner, C, Lampe, A, DiFiore, D, Milathianaki, D, Fry, A.R, Seibert, M.M, Koglin, J.E, Gallo, E, Uhlig, J, Sokaras, D, Weng, T.-C, Zwart, P.H, Skinner, D.E, Bogan, M.J, Messerschmidt, M, Glatzel, P, Williams, G.J, Boutet, S, Adams, P.D, Zouni, A, Messinger, J, Sauter, N.K, Bergmann, U, Yano, J, Yachandra, V.K.
Deposit date:2014-06-04
Release date:2014-07-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:Taking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy.
Nat Commun, 5, 2014
3GBF
DownloadVisualize
BU of 3gbf by Molmil
Phpd with cadmium complexed with hydroethylphosphonate (HEP)
Descriptor: (2-hydroxyethyl)phosphonic acid, CADMIUM ION, PhpD
Authors:Zhang, H, Nair, S.K.
Deposit date:2009-02-19
Release date:2009-06-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:An Unusual Carbon-Carbon Bond Cleavage Reaction in the Biosynthesis of the Herbicide Phosphinothricin
To be Published
7Y8N
DownloadVisualize
BU of 7y8n by Molmil
Structure of ScIRED-R3-V4 from Streptomyces clavuligerus in complex with 5-(2,5-difluorophenyl)-3,4-dihydro-2H-pyrrole
Descriptor: 5-[2,5-bis(fluoranyl)phenyl]-3,4-dihydro-2~{H}-pyrrole, Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase, ...
Authors:Zhang, L.L, Liu, W.D, Shi, M, Huang, J.W, Yang, Y, Chen, C.C, Guo, R.T.
Deposit date:2022-06-24
Release date:2023-05-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Engineered Imine Reductase for Larotrectinib Intermediate Manufacture
Acs Catalysis, 12, 2022
4RKY
DownloadVisualize
BU of 4rky by Molmil
Crystal structure of DJ-1 isoform X1
Descriptor: Protein DJ-1
Authors:Liddington, R.C.
Deposit date:2014-10-14
Release date:2015-08-26
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Transnitrosylation from DJ-1 to PTEN attenuates neuronal cell death in parkinson's disease models.
J.Neurosci., 34, 2014
2SBL
DownloadVisualize
BU of 2sbl by Molmil
THE THREE-DIMENSIONAL STRUCTURE OF AN ARACHIDONIC ACID 15-LIPOXYGENASE
Descriptor: FE (III) ION, LIPOXYGENASE-1
Authors:Amzel, L.M, Boyington, J.C.
Deposit date:1993-07-22
Release date:1995-02-27
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The three-dimensional structure of an arachidonic acid 15-lipoxygenase.
Science, 260, 1993
4LRT
DownloadVisualize
BU of 4lrt by Molmil
Crystal and solution structures of the bifunctional enzyme (Aldolase/Aldehyde dehydrogenase) from Thermomonospora curvata, reveal a cofactor-binding domain motion during NAD+ and CoA accommodation whithin the shared cofactor-binding site
Descriptor: 4-hydroxy-2-oxovalerate aldolase, Acetaldehyde dehydrogenase, COENZYME A, ...
Authors:Fischer, B, Branlant, G, Talfournier, F, Gruez, A.
Deposit date:2013-07-20
Release date:2013-09-04
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal and solution structures of the bifunctional enzyme (Aldolase/Aldehyde dehydrogenase) from Thermomonospora curvata, reveal a cofactor-binding domain motion during NAD+ and CoA accommodation whithin the shared cofactor-binding site
To be Published
7Y9O
DownloadVisualize
BU of 7y9o by Molmil
Crystal structure of a CYP109B4 variant from Bacillus sonorensis
Descriptor: CALCIUM ION, Cytochrome P450 monooxygenase YjiB, IMIDAZOLE, ...
Authors:Shen, P.P, Huang, J.-W, Li, X, Liu, W.D, Chen, C.-C, Guo, R.-T.
Deposit date:2022-06-25
Release date:2023-05-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Rationally Controlling Selective Steroid Hydroxylation via Scaffold Sampling of a P450 Family
Acs Catalysis, 13, 2023
3G5I
DownloadVisualize
BU of 3g5i by Molmil
Crystal Structure of the E.coli RihA pyrimidine nucleosidase bound to a iminoribitol-based inhibitor
Descriptor: (2S,3S,4R,5R)-2-(3,4-diaminophenyl)-5-(hydroxymethyl)pyrrolidine-3,4-diol, BETA-MERCAPTOETHANOL, CALCIUM ION, ...
Authors:Garau, G, Muzzolini, L, Tornaghi, P, Degano, M.
Deposit date:2009-02-05
Release date:2010-02-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Active site plasticity revealed from the structure of the enterobacterial N-ribohydrolase RihA bound to a competitive inhibitor.
Bmc Struct.Biol., 10, 2010
2RLA
DownloadVisualize
BU of 2rla by Molmil
ALTERING THE BINUCLEAR MANGANESE CLUSTER OF ARGINASE DIMINISHES THERMOSTABILITY AND CATALYTIC FUNCTION
Descriptor: ARGINASE, MANGANESE (II) ION
Authors:Scolnick, L.R, Kanyo, Z.F, Christianson, D.W.
Deposit date:1997-05-07
Release date:1998-05-13
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3 Å)
Cite:Altering the binuclear manganese cluster of arginase diminishes thermostability and catalytic function.
Biochemistry, 36, 1997
2REB
DownloadVisualize
BU of 2reb by Molmil
THE STRUCTURE OF THE E. COLI RECA PROTEIN MONOMER AND POLYMER
Descriptor: REC A
Authors:Story, R.M, Steitz, T.A.
Deposit date:1992-03-06
Release date:1993-10-31
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The structure of the E. coli recA protein monomer and polymer.
Nature, 355, 1992
4LS4
DownloadVisualize
BU of 4ls4 by Molmil
Crystal structure of L66S mutant toxin from Helicobacter pylori
Descriptor: BROMIDE ION, Uncharacterized protein, Toxin
Authors:Pathak, C.C, Im, H, Lee, B.J, Yoon, H.J.
Deposit date:2013-07-22
Release date:2014-02-05
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Crystal structure of apo and copper bound HP0894 toxin from Helicobacter pylori 26695 and insight into mRNase activity
Biochim.Biophys.Acta, 1834, 2013
5Z2D
DownloadVisualize
BU of 5z2d by Molmil
Dihydrodipicolinate reductase from Paenisporosarcina sp. TG-14
Descriptor: dihydrodipicolinate reductase
Authors:Lee, J.H, Lee, C.W, Park, S.
Deposit date:2018-01-02
Release date:2019-01-02
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of dihydrodipicolinate reductase (PaDHDPR) from Paenisporosarcina sp. TG-14: structural basis for NADPH preference as a cofactor
Sci Rep, 8, 2018
2SLI
DownloadVisualize
BU of 2sli by Molmil
LEECH INTRAMOLECULAR TRANS-SIALIDASE COMPLEXED WITH 2,7-ANHYDRO-NEU5AC, THE REACTION PRODUCT
Descriptor: 2-ACETYLAMINO-7-(1,2-DIHYDROXY-ETHYL)-3-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCTANE-5-CARBOXYLIC ACID, INTRAMOLECULAR TRANS-SIALIDASE
Authors:Luo, Y, Li, S.C, Li, Y.T, Luo, M.
Deposit date:1998-10-03
Release date:1999-04-27
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The 1.8 A structures of leech intramolecular trans-sialidase complexes: evidence of its enzymatic mechanism.
J.Mol.Biol., 285, 1999
7XWW
DownloadVisualize
BU of 7xww by Molmil
Crystal structure of NTR in complex with BN-XB
Descriptor: 2,2-bis(fluoranyl)-4,6,10,12-tetramethyl-8-[1-[(4-nitrophenyl)methyl]pyridin-1-ium-4-yl]-3-aza-1-azonia-2-boranuidatricyclo[7.3.0.0^{3,7}]dodeca-1(12),4,6,8,10-pentaene, Dihydropteridine reductase, FLAVIN MONONUCLEOTIDE
Authors:Chen, X, Chen, J, Li, J.L.
Deposit date:2022-05-27
Release date:2023-05-31
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of NTR in complex with BN-XB
To Be Published
3G1Q
DownloadVisualize
BU of 3g1q by Molmil
Crystal structure of sterol 14-alpha demethylase (CYP51) from Trypanosoma brucei in ligand free state
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, Sterol 14-alpha-demethylase
Authors:Lepesheva, G.I, Hargrove, T.Y, Harp, J, Wawrzak, Z, Waterman, M.R, Park, H.
Deposit date:2009-01-30
Release date:2009-10-06
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:Crystal structures of Trypanosoma brucei sterol 14alpha-demethylase and implications for selective treatment of human infections.
J.Biol.Chem., 285, 2010
3GG7
DownloadVisualize
BU of 3gg7 by Molmil
Crystal structure of an uncharacterized metalloprotein from Deinococcus radiodurans
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, MANGANESE (II) ION, ...
Authors:Bonanno, J.B, Dickey, M, Bain, K.T, Tang, B.K, Romero, R, Wasserman, S, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2009-02-27
Release date:2009-03-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of an uncharacterized metalloprotein from Deinococcus radiodurans
To be Published
7Y97
DownloadVisualize
BU of 7y97 by Molmil
Crystal structure of CYP109B4 from Bacillus Sonorensis
Descriptor: Cytochrome P450 monooxygenase YjiB, PROTOPORPHYRIN IX CONTAINING FE
Authors:Shen, P.P, Huang, J.-W, Li, X, Liu, W.D, Chen, C.-C, Guo, R.-T.
Deposit date:2022-06-24
Release date:2023-05-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Rationally Controlling Selective Steroid Hydroxylation via Scaffold Sampling of a P450 Family
Acs Catalysis, 13, 2023
5Z3F
DownloadVisualize
BU of 5z3f by Molmil
Glycosidase E335A in complex with glucose
Descriptor: CITRIC ACID, GLYCEROL, Glycoside hydrolase 15-related protein, ...
Authors:Tanaka, Y, Chen, M, Tagami, T, Yao, M, Kimura, A.
Deposit date:2018-01-05
Release date:2019-05-15
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Structural insights reveal the second base catalyst of isomaltose glucohydrolase.
Febs J., 289, 2022
4LYC
DownloadVisualize
BU of 4lyc by Molmil
Cd ions within a lysoyzme single crystal
Descriptor: CADMIUM ION, Lysozyme C
Authors:Wei, H, House, S, Wu, J, Zhang, J, Wang, Z, He, Y, Gao, Y.-G, Robinson, H, Li, W, Zuo, J.-M, Robertson, I.M, Lu, Y.
Deposit date:2013-07-30
Release date:2015-02-25
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Enhanced and tunable fluorescent quantum dots within a single crystal of protein
TO BE PUBLISHED
2R5V
DownloadVisualize
BU of 2r5v by Molmil
Hydroxymandelate Synthase Crystal Structure
Descriptor: (2S)-hydroxy(4-hydroxyphenyl)ethanoic acid, COBALT (II) ION, PCZA361.1, ...
Authors:Brownlee, J.M, He, P, Moran, G.R, Harrison, D.H.T.
Deposit date:2007-09-04
Release date:2008-03-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Two roads diverged: the structure of hydroxymandelate synthase from Amycolatopsis orientalis in complex with 4-hydroxymandelate.
Biochemistry, 47, 2008

224004

건을2024-08-21부터공개중

PDB statisticsPDBj update infoContact PDBjnumon