PDB: 350 resultsInfo pagesStatus searchChemie searchBIRD

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6EGX	Sacbrood virus of honeybee - expansion state I Descriptor: minor capsid protein MiCP, structural protein VP1, structural protein VP2, ... Authors: Plevka, P, Prochazkova, M. Deposit date: 2017-09-12 Release date: 2018-07-18 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (4.06 Å) Cite: Virion structure and genome delivery mechanism of sacbrood honeybee virus. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6EH1	Sacbrood virus of honeybee - expansion state II Descriptor: minor capsid protein MiCP, structural protein VP1, structural protein VP2, ... Authors: Plevka, P, Prochazkova, M. Deposit date: 2017-09-12 Release date: 2018-07-18 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (7.25 Å) Cite: Virion structure and genome delivery mechanism of sacbrood honeybee virus. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6EIW	Sacbrood virus of honeybee empty particle Descriptor: minor capsid protein MiCP, structural protein VP1, structural protein VP2, ... Authors: Plevka, P, Prochazkova, M. Deposit date: 2017-09-19 Release date: 2018-07-18 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (3.87 Å) Cite: Virion structure and genome delivery mechanism of sacbrood honeybee virus. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
4F1I	Crystal structure of SeMet TDP2 from Caenorhabditis elegans Descriptor: 5'-tyrosyl-DNA phosphodiesterase, GLYCEROL Authors: Shi, K, Kurahashi, K, Aihara, H. Deposit date: 2012-05-07 Release date: 2012-10-31 Last modified: 2017-11-15 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural basis for recognition of 5'-phosphotyrosine adducts by Tdp2. Nat.Struct.Mol.Biol., 19, 2012
4F1H	Crystal structure of TDP2 from Danio rerio complexed with a single strand DNA Descriptor: DNA (5'-D(P*TP*GP*CP*AP*G)-3'), GLYCEROL, MAGNESIUM ION, ... Authors: Shi, K, Kurahashi, K, Aihara, H. Deposit date: 2012-05-06 Release date: 2012-10-31 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.662 Å) Cite: Structural basis for recognition of 5'-phosphotyrosine adducts by Tdp2. Nat.Struct.Mol.Biol., 19, 2012
3BSO	Norwalk Virus polymerase bound to cytidine 5'-triphosphate and primer-template RNA Descriptor: CYTIDINE-5'-TRIPHOSPHATE, GLYCEROL, MANGANESE (II) ION, ... Authors: Zamyatkin, D.F, Ng, K.K.S. Deposit date: 2007-12-26 Release date: 2008-01-08 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.74 Å) Cite: Structural insights into mechanisms of catalysis and inhibition in norwalk virus polymerase. J.Biol.Chem., 283, 2008
3BSN	Norwalk Virus polymerase bound to 5-nitrocytidine triphosphate and primer-template RNA Descriptor: 5-nitrocytidine 5'-(tetrahydrogen triphosphate), GLYCEROL, MANGANESE (II) ION, ... Authors: Zamyatkin, D.F, Ng, K.K.S. Deposit date: 2007-12-26 Release date: 2008-01-08 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural insights into mechanisms of catalysis and inhibition in norwalk virus polymerase. J.Biol.Chem., 283, 2008
4BIQ	Homology model of coxsackievirus A7 (CAV7) empty capsid proteins. Descriptor: VP1, VP2, VP3 Authors: Seitsonen, J.J.T, Shakeel, S, Susi, P, Pandurangan, A.P, Sinkovits, R.S, Hyvonen, H, Laurinmaki, P, Yla-Pelto, J, Topf, M, Hyypia, T, Butcher, S.J. Deposit date: 2013-04-12 Release date: 2013-10-02 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (6.09 Å) Cite: Combined Approaches to Flexible Fitting and Assessment in Virus Capsids Undergoing Conformational Change. J.Struct.Biol., 185, 2014
4FVA	Crystal structure of truncated Caenorhabditis elegans TDP2 Descriptor: 1,2-ETHANEDIOL, 5'-tyrosyl-DNA phosphodiesterase, MAGNESIUM ION, ... Authors: Shi, K, Kurahashi, K, Aihara, H. Deposit date: 2012-06-29 Release date: 2012-10-31 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.07 Å) Cite: Structural basis for recognition of 5'-phosphotyrosine adducts by Tdp2. Nat.Struct.Mol.Biol., 19, 2012
4GEW	Crystal structure of TDP2 from C. elegans Descriptor: 5'-tyrosyl-DNA phosphodiesterase, GLYCEROL Authors: Shi, K, Kurahashi, K, Aihara, H. Deposit date: 2012-08-02 Release date: 2012-10-31 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Structural basis for recognition of 5'-phosphotyrosine adducts by Tdp2. Nat.Struct.Mol.Biol., 19, 2012
4FPV	Crystal structure of D. rerio TDP2 complexed with single strand DNA product Descriptor: DNA (5'-D(P*TP*GP*CP*AP*G)-3'), GLYCEROL, MAGNESIUM ION, ... Authors: Shi, K, Kurahashi, K, Aihara, H. Deposit date: 2012-06-22 Release date: 2012-10-31 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.73 Å) Cite: Structural basis for recognition of 5'-phosphotyrosine adducts by Tdp2. Nat.Struct.Mol.Biol., 19, 2012
4IQX	Mutant P44S P169S M296I of Foot-and-mouth disease Virus RNA-dependent RNA polymerase Descriptor: 3D polymerase, RNA (5'-R(*AP*UP*GP*GP*GP*CP*C)-3'), RNA (5'-R(*GP*GP*CP*CP*C)-3') Authors: Ferrer-Orta, C, Verdaguer, N, Agudo, R, Perez-Luque, R. Deposit date: 2013-01-14 Release date: 2013-02-06 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.5 Å) Cite: A multi-step process of viral adaptation to a mutagenic nucleoside analogue by modulation of transition types leads to extinction-escape. Plos Pathog., 6, 2010
4N53	Human enterovirus 71 uncoating intermediate captured at atomic resolution Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3, ... Authors: Chen, R, Lyu, K. Deposit date: 2013-10-09 Release date: 2014-02-05 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.3063 Å) Cite: Human enterovirus 71 uncoating captured at atomic resolution. J.Virol., 88, 2014
4NLT	Poliovirus Polymerase - S291P Loop Mutant Descriptor: ACETIC ACID, PENTAETHYLENE GLYCOL, RNA-directed RNA polymerase 3D-POL, ... Authors: Sholders, A.J, Peersen, O.B. Deposit date: 2013-11-14 Release date: 2014-01-22 Last modified: 2014-03-26 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Distinct conformations of a putative translocation element in poliovirus polymerase. J.Mol.Biol., 426, 2014
7THX	Cryo-EM structure of W6 possum enterovirus Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3, ... Authors: Wang, I, Jayawardena, N, Strauss, M, Bostina, M. Deposit date: 2022-01-12 Release date: 2022-03-09 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (2.96 Å) Cite: Cryo-EM Structure of a Possum Enterovirus. Viruses, 14, 2022
4NLP	Poliovirus Polymerase - C290V Loop Mutant Descriptor: ACETIC ACID, PENTAETHYLENE GLYCOL, RNA-directed RNA polymerase 3D-POL, ... Authors: Sholders, A.J, Peersen, O.B. Deposit date: 2013-11-14 Release date: 2014-01-22 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Distinct conformations of a putative translocation element in poliovirus polymerase. J.Mol.Biol., 426, 2014
4NLX	Poliovirus Polymerase - G289A/C290V Loop Mutant Descriptor: ACETIC ACID, PENTAETHYLENE GLYCOL, RNA-directed RNA polymerase 3D-POL, ... Authors: Sholders, A.J, Peersen, O.B. Deposit date: 2013-11-14 Release date: 2014-01-22 Last modified: 2014-03-26 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Distinct conformations of a putative translocation element in poliovirus polymerase. J.Mol.Biol., 426, 2014
4N43	Human enterovirus 71 uncoating intermediate captured at atomic resolution Descriptor: Capsid protein VP1, Capsid protein VP2, Capsid protein VP3 Authors: Chen, R, Lyu, K. Deposit date: 2013-10-08 Release date: 2014-02-05 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.8011 Å) Cite: Human enterovirus 71 uncoating captured at atomic resolution. J.Virol., 88, 2014
4NLU	Poliovirus Polymerase - G289A Loop Mutant Descriptor: ACETIC ACID, PENTAETHYLENE GLYCOL, RNA-directed RNA polymerase 3D-POL, ... Authors: Sholders, A.J, Peersen, O.B. Deposit date: 2013-11-14 Release date: 2014-01-22 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Distinct conformations of a putative translocation element in poliovirus polymerase. J.Mol.Biol., 426, 2014
4NLS	Poliovirus Polymerase - S288A Loop Mutant Descriptor: ACETIC ACID, PENTAETHYLENE GLYCOL, RNA-directed RNA polymerase 3D-POL, ... Authors: Sholders, A.J, Peersen, O.B. Deposit date: 2013-11-14 Release date: 2014-01-22 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2 Å) Cite: Distinct conformations of a putative translocation element in poliovirus polymerase. J.Mol.Biol., 426, 2014
4NLQ	Poliovirus Polymerase - C290F Loop Mutant Descriptor: ACETIC ACID, PENTAETHYLENE GLYCOL, RNA-directed RNA polymerase 3D-POL, ... Authors: Sholders, A.J, Peersen, O.B. Deposit date: 2013-11-14 Release date: 2014-01-22 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Distinct conformations of a putative translocation element in poliovirus polymerase. J.Mol.Biol., 426, 2014
4NLV	Poliovirus Polymerase - G289A/C290F Loop Mutant Descriptor: ACETIC ACID, PENTAETHYLENE GLYCOL, RNA-directed RNA polymerase 3D-POL, ... Authors: Sholders, A.J, Peersen, O.B. Deposit date: 2013-11-14 Release date: 2014-01-22 Last modified: 2014-03-26 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Distinct conformations of a putative translocation element in poliovirus polymerase. J.Mol.Biol., 426, 2014
4NLW	Poliovirus Polymerase - G289A/C290I Loop Mutant Descriptor: ACETIC ACID, PENTAETHYLENE GLYCOL, RNA-directed RNA polymerase 3D-POL, ... Authors: Sholders, A.J, Peersen, O.B. Deposit date: 2013-11-14 Release date: 2014-01-22 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Distinct conformations of a putative translocation element in poliovirus polymerase. J.Mol.Biol., 426, 2014
4NLY	Poliovirus Polymerase - C290E Loop Mutant Descriptor: ACETIC ACID, PENTAETHYLENE GLYCOL, RNA-directed RNA polymerase 3D-POL, ... Authors: Sholders, A.J, Peersen, O.B. Deposit date: 2013-11-14 Release date: 2014-01-22 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Distinct conformations of a putative translocation element in poliovirus polymerase. J.Mol.Biol., 426, 2014
4NLR	Poliovirus Polymerase - C290S Loop Mutant Descriptor: ACETIC ACID, PENTAETHYLENE GLYCOL, RNA-directed RNA polymerase 3D-POL, ... Authors: Sholders, A.J, Peersen, O.B. Deposit date: 2013-11-14 Release date: 2014-01-22 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2 Å) Cite: Distinct conformations of a putative translocation element in poliovirus polymerase. J.Mol.Biol., 426, 2014

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