PDB: 151 件ウェブページステータス検索Chemie searchBIRD

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4URH	High-resolution structure of partially oxidized D. fructosovorans NiFe-hydrogenase 分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ... 著者 Volbeda, A, Martin, L, Barbier, E, Gutierrez-Sanz, O, DeLacey, A.L, Liebgott, P.P, Dementin, S, Rousset, M, Fontecilla-Camps, J.C. 登録日 2014-06-30 公開日 2014-10-29 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.44 Å) 主引用文献 Crystallographic studies of [NiFe]-hydrogenase mutants: towards consensus structures for the elusive unready oxidized states. J. Biol. Inorg. Chem., 20, 2015
5JSU	The 3D structure of the U489C variant of [NiFeSe] hydrogenase from Desulfovibrio vulgaris Hildenborough in the oxidized state at 1.40 Angstrom resolution 分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE (II) ION, HYDROSULFURIC ACID, ... 著者 Marques, M.C, Pereira, I.A.C, Matias, P.M. 登録日 2016-05-09 公開日 2017-03-22 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 The direct role of selenocysteine in [NiFeSe] hydrogenase maturation and catalysis. Nat. Chem. Biol., 13, 2017
8DQV	The 1.52 angstrom CryoEM structure of the [NiFe]-hydrogenase Huc from Mycobacterium smegmatis - catalytic dimer (Huc2S2L) 分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, Hydrogenase-2, ... 著者 Grinter, R, Venugopal, H, Kropp, A, Greening, C. 登録日 2022-07-20 公開日 2023-01-04 最終更新日 2023-03-29 実験手法 ELECTRON MICROSCOPY (1.52 Å) 主引用文献 Structural basis for bacterial energy extraction from atmospheric hydrogen. Nature, 615, 2023
5D51	Krypton derivatization of an O2-tolerant membrane-bound [NiFe] hydrogenase reveals a hydrophobic gas tunnel network 分子名称: CHLORIDE ION, FE3-S4 CLUSTER, FE4-S3 CLUSTER, ... 著者 Kalms, J, Schmidt, A, Frielingsdorf, S, van der Linden, P, von Stetten, D, Lenz, O, Carpentier, P, Scheerer, P. 登録日 2015-08-10 公開日 2016-03-23 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.47 Å) 主引用文献 Krypton Derivatization of an O2 -Tolerant Membrane-Bound [NiFe] Hydrogenase Reveals a Hydrophobic Tunnel Network for Gas Transport. Angew.Chem.Int.Ed.Engl., 55, 2016
3USC	Crystal Structure of E. coli hydrogenase-1 in a ferricyanide-oxidized form 分子名称: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, DODECYL-BETA-D-MALTOSIDE, ... 著者 Volbeda, A, Fontecilla-Camps, J.C, Darnault, C. 登録日 2011-11-23 公開日 2012-03-28 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 X-ray crystallographic and computational studies of the O2-tolerant [NiFe]-hydrogenase 1 from Escherichia coli. Proc.Natl.Acad.Sci.USA, 109, 2012
8W6X	Neutron structure of [NiFe]-hydrogenase from D. vulgaris Miyazaki F in its oxidized state 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, FE3-S4 CLUSTER, ... 著者 Hiromoto, T, Tamada, T. 登録日 2023-08-30 公開日 2023-09-13 最終更新日 2023-11-15 実験手法 NEUTRON DIFFRACTION (1.04 Å), X-RAY DIFFRACTION 主引用文献 New insights into the oxidation process from neutron and X-ray crystal structures of an O 2 -sensitive [NiFe]-hydrogenase. Chem Sci, 14, 2023
1CC1	CRYSTAL STRUCTURE OF A REDUCED, ACTIVE FORM OF THE NI-FE-SE HYDROGENASE FROM DESULFOMICROBIUM BACULATUM 分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE (II) ION, HYDROGENASE (LARGE SUBUNIT), ... 著者 Garcin, E, Vernede, X, Hatchikian, E.C, Volbeda, A, Frey, M, Fontecilla-Camps, J.C. 登録日 1999-03-03 公開日 1999-06-01 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 The crystal structure of a reduced [NiFeSe] hydrogenase provides an image of the activated catalytic center Structure Fold.Des., 7, 1999
2WPN	Structure of the oxidised, as-isolated NiFeSe hydrogenase from D. vulgaris Hildenborough 分子名称: 3-[DODECYL(DIMETHYL)AMMONIO]PROPANE-1-SULFONATE, BIS-(MU-2-OXO),[(MU-3--SULFIDO)-BIS(MU-2--SULFIDO)-TRIS(CYS-S)-TRI-IRON] (AQUA)(GLU-O)IRON(II), CARBONMONOXIDE-(DICYANO) IRON, ... 著者 Marques, M.C, Coelho, R, De Lacey, A.L, Pereira, I.A.C, Matias, P.M. 登録日 2009-08-07 公開日 2010-01-12 最終更新日 2019-07-10 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 The three-dimensional structure of [NiFeSe] hydrogenase from Desulfovibrio vulgaris Hildenborough: a hydrogenase without a bridging ligand in the active site in its oxidised, "as-isolated" state. J.Mol.Biol., 396, 2010
3MYR	Crystal structure of [NiFe] hydrogenase from Allochromatium vinosum in its Ni-A state 分子名称: CHLORIDE ION, FE3-S4 CLUSTER, Hydrogenase (NiFe) small subunit HydA, ... 著者 Ogata, H, Kellers, P, Lubitz, W. 登録日 2010-05-11 公開日 2010-08-04 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 The crystal structure of the [NiFe] hydrogenase from the photosynthetic bacterium Allochromatium vinosum: characterization of the oxidized enzyme (Ni-A state). J.Mol.Biol., 402, 2010
3RGW	Crystal structure at 1.5 A resolution of an H2-reduced, O2-tolerant hydrogenase from Ralstonia eutropha unmasks a novel iron-sulfur cluster 分子名称: FE3-S4 CLUSTER, FE4-S3 CLUSTER, IRON/SULFUR CLUSTER, ... 著者 Scheerer, P, Fritsch, J, Frielingsdorf, S, Kroschinsky, S, Friedrich, B, Lenz, O, Spahn, C.M.T. 登録日 2011-04-10 公開日 2011-10-26 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 The crystal structure of an oxygen-tolerant hydrogenase uncovers a novel iron-sulphur centre. Nature, 479, 2011
2FRV	CRYSTAL STRUCTURE OF THE OXIDIZED FORM OF NI-FE HYDROGENASE 分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ... 著者 Volbeda, A, Frey, M, Fontecilla-Camps, J.C. 登録日 1997-06-10 公開日 1998-06-17 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2.54 Å) 主引用文献 Structure of the [Nife] Hydrogenase Active Site: Evidence for Biologically Uncommon Fe Ligands J.Am.Chem.Soc., 118, 1996
4UQP	High-resolution structure of the D. fructosovorans NiFe-hydrogenase L122A mutant after exposure to air 分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, GLYCEROL, ... 著者 Volbeda, A, Martin, L, Barbier, E, Gutierrez-Sanz, O, DeLacey, A.L, Liebgott, P.P, Dementin, S, Rousset, M, Fontecilla-Camps, J.C. 登録日 2014-06-24 公開日 2014-10-29 最終更新日 2023-03-15 実験手法 X-RAY DIFFRACTION (1.42 Å) 主引用文献 Crystallographic Studies of [Nife]-Hydrogenase Mutants: Towards Consensus Structures for the Elusive Unready Oxidized States. J.Biol.Inorg.Chem., 20, 2015
4UQL	High-resolution structure of a Ni-A Ni-Sox mixture of the D. fructosovorans NiFe-hydrogenase L122A mutant 分子名称: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE3-S4 CLUSTER, ... 著者 Volbeda, A, Martin, L, Barbier, E, Gutierrez-Sanz, O, DeLacey, A.L, Liebgott, P.P, Dementin, S, Rousset, M, Fontecilla-Camps, J.C. 登録日 2014-06-24 公開日 2014-10-29 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.22 Å) 主引用文献 Crystallographic Studies of [Nife]-Hydrogenase Mutants: Towards Consensus Structures for the Elusive Unready Oxidized States. J.Biol.Inorg.Chem., 20, 2015
4OMF	The F420-reducing [NiFe]-hydrogenase complex from Methanothermobacter marburgensis, the first X-ray structure of a group 3 family member 分子名称: CHLORIDE ION, F420-reducing hydrogenase, subunit alpha, ... 著者 Vitt, S, Ma, K, Warkentin, E, Moll, J, Pierik, A, Shima, S, Ermler, U. 登録日 2014-01-27 公開日 2014-06-11 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.71 Å) 主引用文献 The F420-Reducing [NiFe]-Hydrogenase Complex from Methanothermobacter marburgensis, the First X-ray Structure of a Group 3 Family Member. J.Mol.Biol., 426, 2014
3AYX	Membrane-bound respiratory [NiFe] hydrogenase from Hydrogenovibrio marinus in an H2-reduced condition 分子名称: CARBON MONOXIDE, CYANIDE ION, FE (II) ION, ... 著者 Shomura, Y, Yoon, K.S, Nishihara, H, Higuchi, Y. 登録日 2011-05-20 公開日 2011-10-12 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.18 Å) 主引用文献 Structural basis for a [4Fe-3S] cluster in the oxygen-tolerant membrane-bound [NiFe]-hydrogenase Nature, 479, 2011
4CI0	Electron cryo-microscopy of F420-reducing NiFe hydrogenase Frh 分子名称: F420-REDUCING HYDROGENASE, SUBUNIT ALPHA, SUBUNIT BETA, ... 著者 Allegretti, M, Mills, D.J, McMullan, G, Kuehlbrandt, W, Vonck, J. 登録日 2013-12-05 公開日 2014-02-26 最終更新日 2019-11-20 実験手法 ELECTRON MICROSCOPY (3.36 Å) 主引用文献 Atomic Model of the F420-Reducing [Nife] Hydrogenase by Electron Cryo-Electron Microscopy Using a Direct Electron Detector. Elife, 3, 2014
3AYZ	Membrane-bound respiratory [NiFe] hydrogenase from Hydrogenovibrio marinus in an air-oxidized condition 分子名称: CARBON MONOXIDE, CYANIDE ION, FE (II) ION, ... 著者 Shomura, Y, Yoon, K.S, Nishihara, H, Higuchi, Y. 登録日 2011-05-20 公開日 2011-10-12 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.22 Å) 主引用文献 Structural basis for a [4Fe-3S] cluster in the oxygen-tolerant membrane-bound [NiFe]-hydrogenase Nature, 479, 2011
4C3O	Structure and function of an oxygen tolerant NiFe hydrogenase from Salmonella 分子名称: CHLORIDE ION, FE3-S4 CLUSTER, FE4-S3 CLUSTER, ... 著者 Bowman, L, Flanagan, L, Fyfe, P.K, Parkin, A, Hunter, W.N, Sargent, F. 登録日 2013-08-26 公開日 2014-01-29 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 How the Structure of the Large Subunit Controls Function in an Oxygen-Tolerant [Nife]-Hydrogenase. Biochem.J., 458, 2014
4TTT	Crystal structure of an O2-tolerant [NiFe]-hydrogenase from Ralstonia eutropha in its as-isolated form - oxidized state 3 分子名称: CHLORIDE ION, FE3-S4 CLUSTER, FE4-S3 CLUSTER, ... 著者 Schmidt, A, Kalms, J, Scheerer, P. 登録日 2014-06-23 公開日 2015-01-28 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.72 Å) 主引用文献 Tracking the route of molecular oxygen in O2-tolerant membrane-bound [NiFe] hydrogenase Proc.Natl.Acad.Sci.Usa, 2018
6Z8M	Structure of [NiFeSe] hydrogenase G491S variant from Desulfovibrio vulgaris Hildenborough pressurized with Oxygen gas - structure G491S-O2 分子名称: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE (II) ION, ... 著者 Zacarias, S, Temporao, A, Carpentier, P, van der Linden, P, Pereira, I.A.C, Matias, P.M. 登録日 2020-06-02 公開日 2020-09-09 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.02 Å) 主引用文献 Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen. J.Biol.Inorg.Chem., 25, 2020
6QII	Xenon derivatization of the F420-reducing [NiFe] hydrogenase complex from Methanosarcina barkeri 分子名称: (R,R)-2,3-BUTANEDIOL, Coenzyme F420 hydrogenase subunit alpha, Coenzyme F420 hydrogenase subunit beta, ... 著者 Ilina, Y, Lorent, C, Katz, S, Jeoung, J.H, Shima, S, Horch, M, Zebger, I, Dobbek, H. 登録日 2019-01-19 公開日 2019-10-23 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.28 Å) 主引用文献 X-ray Crystallography and Vibrational Spectroscopy Reveal the Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] Hydrogenases. Angew.Chem.Int.Ed.Engl., 58, 2019
6Z9G	Structure of [NiFeSe] hydrogenase G491A variant from Desulfovibrio vulgaris Hildenborough pressurized with Oxygen gas - structure G491A-O2 分子名称: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE (II) ION, ... 著者 Zacarias, S, Temporao, A, Carpentier, P, van der Linden, P, Pereira, I.A.C, Matias, P.M. 登録日 2020-06-03 公開日 2020-09-09 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen. J.Biol.Inorg.Chem., 25, 2020
6ZA1	Structure of [NiFeSe] hydrogenase G491A variant from Desulfovibrio vulgaris Hildenborough pressurized with Oxygen gas - structure G491A-O2-hd 分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE (II) ION, GLYCEROL, ... 著者 Zacarias, S, Temporao, A, Carpentier, P, van der Linden, P, Pereira, I.A.C, Matias, P.M. 登録日 2020-06-04 公開日 2020-09-09 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.37 Å) 主引用文献 Exploring the gas access routes in a [NiFeSe] hydrogenase using crystals pressurized with krypton and oxygen. J.Biol.Inorg.Chem., 25, 2020
6QGT	The carbon monoxide inhibition of F420-reducing [NiFe] hydrogenase complex from Methanosarcina barkeri 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, (R,R)-2,3-BUTANEDIOL, Coenzyme F420 hydrogenase subunit beta, ... 著者 Ilina, Y, Lorent, C, Katz, S, Jeoung, J.H, Shima, S, Horch, M, Zebger, I, Dobbek, H. 登録日 2019-01-12 公開日 2019-10-23 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.988 Å) 主引用文献 X-ray Crystallography and Vibrational Spectroscopy Reveal the Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] Hydrogenases. Angew.Chem.Int.Ed.Engl., 58, 2019
6QGR	The F420-reducing [NiFe] hydrogenase complex from Methanosarcina barkeri at the Nia-S state 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, (R,R)-2,3-BUTANEDIOL, Coenzyme F420 hydrogenase subunit alpha, ... 著者 Ilina, Y, Lorent, C, Katz, S, Jeoung, J.H, Shima, S, Horch, M, Zebger, I, Dobbek, H. 登録日 2019-01-12 公開日 2019-10-23 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.839 Å) 主引用文献 X-ray Crystallography and Vibrational Spectroscopy Reveal the Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] Hydrogenases. Angew.Chem.Int.Ed.Engl., 58, 2019

 

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