PDB: 2832 件ウェブページステータス検索Chemie searchBIRD

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1Z56	Co-Crystal Structure of Lif1p-Lig4p 分子名称: DNA ligase IV, Ligase interacting factor 1 著者 Dore, A.S, Furnham, N, Davies, O.R, Sibanda, B.L, Chirgadze, D.Y, Jackson, S.P, Pellegrini, L, Blundell, T.L. 登録日 2005-03-17 公開日 2006-01-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (3.92 Å) 主引用文献 Structure of an Xrcc4-DNA ligase IV yeast ortholog complex reveals a novel BRCT interaction mode. DNA REPAIR, 5, 2006
6GDR	DNA binding with a minimal scaffold: Structure-function analysis of Lig E DNA ligases 分子名称: ADENOSINE MONOPHOSPHATE, DNA, DNA (5'-D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*T)-3'), ... 著者 Williamson, A, Grigic, M, Leiros, H.K.S. 登録日 2018-04-24 公開日 2018-07-25 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.33 Å) 主引用文献 DNA binding with a minimal scaffold: structure-function analysis of Lig E DNA ligases. Nucleic Acids Res., 46, 2018
3RR5	DNA ligase from the archaeon Thermococcus sp. 1519 分子名称: DNA ligase, MAGNESIUM ION 著者 Petrova, T, Bezsudnova, E.Y, Boyko, K.M, Mardanov, A.V, Popov, V.O, Polyakov, K.M, Ravin, N.V, Shabalin, I.G, Skryabin, K.G, Stekhanova, T.N, Kovalchuk, M.V. 登録日 2011-04-29 公開日 2012-04-11 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.018 Å) 主引用文献 ATP-dependent DNA ligase from Thermococcus sp. 1519 displays a new arrangement of the OB-fold domain. Acta Crystallogr.,Sect.F, 68, 2012
1TAE	Structural rearrangement accompanying NAD+ synthesis within a bacterial DNA ligase crystal 分子名称: DNA ligase, NAD-dependent, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... 著者 Gajiwala, K.S, Pinko, C. 登録日 2004-05-19 公開日 2004-11-23 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural rearrangement accompanying NAD+ synthesis within a bacterial DNA ligase crystal. STRUCTURE, 12, 2004
7RPX	Archaeal DNA ligase and heterotrimeric PCNA in complex with end-joined DNA 分子名称: DNA ligase, DNA polymerase sliding clamp 1, DNA polymerase sliding clamp 2, ... 著者 Sverzhinsky, A, Pascal, J.M. 登録日 2021-08-04 公開日 2021-11-17 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Cryo-EM structures and biochemical insights into heterotrimeric PCNA regulation of DNA ligase. Structure, 30, 2022
4EQ5	DNA ligase from the archaeon Thermococcus sibiricus 分子名称: ADENOSINE MONOPHOSPHATE, DNA ligase 著者 Petrova, T, Bezsudnova, E.Y, Dorokhov, B.D, Slutskaya, E.S, Polyakov, K.M, Dorovatovskiy, P.V, Ravin, N.V, Skryabin, K.G, Kovalchuk, M.V, Popov, V.O. 登録日 2012-04-18 公開日 2012-05-09 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Expression, purification, crystallization and preliminary crystallographic analysis of a thermostable DNA ligase from the archaeon Thermococcus sibiricus. Acta Crystallogr.,Sect.F, 68, 2012
3GDE	The closed conformation of ATP-dependent DNA ligase from Archaeoglobus fulgidus 分子名称: DNA ligase, PHOSPHATE ION 著者 Kim, D.J, Kim, H.-W, Kim, O, Kim, H.S, Lee, S.J, Suh, S.W. 登録日 2009-02-24 公開日 2009-12-15 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 ATP-dependent DNA ligase from Archaeoglobus fulgidus displays a tightly closed conformation Acta Crystallogr.,Sect.F, 65, 2009
1UW0	Solution structure of the zinc-finger domain from DNA ligase IIIa 分子名称: DNA LIGASE III, ZINC ION 著者 Kulczyk, A.W, Yang, J.-C, Neuhaus, D. 登録日 2004-01-27 公開日 2004-08-05 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution Structure and DNA Binding of the Zinc-Finger Domain from DNA Ligase Iiialpha J.Mol.Biol., 341, 2004
3JSL	Crystal structure of the adenylation domain of NAD+-dependent DNA ligase from Staphylococcus aureus 分子名称: DNA ligase, SULFATE ION 著者 Han, S, Chang, J.S, Griffor, M. 登録日 2009-09-10 公開日 2009-12-15 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structure of the adenylation domain of NAD(+)-dependent DNA ligase from Staphylococcus aureus. Acta Crystallogr.,Sect.F, 65, 2009
3JSN	Crystal structure of the adenylation domain of NAD+-dependent DNA ligase from Staphylococcus aureus 分子名称: DNA ligase 著者 Han, S, Chang, J.S, Griffor, M. 登録日 2009-09-10 公開日 2009-12-15 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structure of the adenylation domain of NAD(+)-dependent DNA ligase from Staphylococcus aureus. Acta Crystallogr.,Sect.F, 65, 2009
7D9K	DNA binding domain of human DNA Ligase IV - Wild type 分子名称: DNA ligase 4 著者 Maddi, E.R, Raghavan, S.C, Natesh, R. 登録日 2020-10-13 公開日 2021-02-24 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Hypomorphic mutations in human DNA ligase IV lead to compromised DNA binding efficiency, hydrophobicity and thermal stability. Protein Eng.Des.Sel., 34, 2021
4HTP	Crystal structure of the DBD domain of human DNA ligase IV bound to Artemis peptide 分子名称: DNA ligase 4, Protein artemis 著者 De Ioannes, P.E, Aggarwal, A.K. 登録日 2012-11-01 公開日 2012-12-26 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.2502 Å) 主引用文献 Structural Basis of DNA Ligase IV-Artemis Interaction in Nonhomologous End-Joining. Cell Rep, 2, 2012
4HTO	Crystal structure of the DBD domain of human DNA ligase IV Apo form 分子名称: DNA ligase 4, PHOSPHATE ION 著者 De Ioannes, P.E, Aggarwal, A.K. 登録日 2012-11-01 公開日 2012-12-26 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.8068 Å) 主引用文献 Structural Basis of DNA Ligase IV-Artemis Interaction in Nonhomologous End-Joining. Cell Rep, 2, 2012
7D9Y	DNA binding domain of human DNA Ligase IV mutant - A3V 分子名称: DNA ligase 4 著者 Maddi, E.R, Raghavan, S.C, Natesh, R. 登録日 2020-10-14 公開日 2021-02-24 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.76 Å) 主引用文献 Hypomorphic mutations in human DNA ligase IV lead to compromised DNA binding efficiency, hydrophobicity and thermal stability. Protein Eng.Des.Sel., 34, 2021
1TA8	Structural rearrangement accompanying NAD+ synthesis within a bacterial DNA ligase crystal 分子名称: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase, NAD-dependent, ... 著者 Gajiwala, K.S, Pinko, C. 登録日 2004-05-19 公開日 2004-11-23 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural rearrangement accompanying NAD+ synthesis within a bacterial DNA ligase crystal. STRUCTURE, 12, 2004
7OBN	Structural investigations of a new L3 DNA ligase: structure-function analysis 分子名称: ADENOSINE MONOPHOSPHATE, DNA (5'-D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*T)-3'), DNA ligase, ... 著者 Leiros, H.-K.S, Williamson, A. 登録日 2021-04-23 公開日 2022-02-09 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Bacteriophage origin of some minimal ATP-dependent DNA ligases: a new structure from Burkholderia pseudomallei with striking similarity to Chlorella virus ligase. Sci Rep, 11, 2021
6NHX	mycobacterial DNA ligase D complexed with ATP and MES 分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent DNA ligase 著者 Shuman, S, Unciuleac, M, Goldgur, Y. 登録日 2018-12-24 公開日 2019-02-13 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Structures of ATP-bound DNA ligase D in a closed domain conformation reveal a network of amino acid and metal contacts to the ATP phosphates. J. Biol. Chem., 294, 2019
6NHZ	mycobacterial DNA ligase D complexed with ATP and Mg 分子名称: ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent DNA ligase, MAGNESIUM ION 著者 Shuman, S, Unciuleac, M, Goldgur, Y. 登録日 2018-12-24 公開日 2019-02-13 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structures of ATP-bound DNA ligase D in a closed domain conformation reveal a network of amino acid and metal contacts to the ATP phosphates. J. Biol. Chem., 294, 2019
7RPW	Archaeal DNA ligase and heterotrimeric PCNA in complex with adenylated DNA 分子名称: ADENOSINE MONOPHOSPHATE, DNA ligase, DNA polymerase sliding clamp 1, ... 著者 Sverzhinsky, A, Pascal, J.M. 登録日 2021-08-04 公開日 2021-11-17 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (4.38 Å) 主引用文献 Cryo-EM structures and biochemical insights into heterotrimeric PCNA regulation of DNA ligase. Structure, 30, 2022
7RPO	Archaeal DNA ligase and heterotrimeric PCNA in complex with non-ligatable DNA 分子名称: ADENOSINE MONOPHOSPHATE, DNA ligase, DNA polymerase sliding clamp 1, ... 著者 Sverzhinsky, A, Pascal, J.M. 登録日 2021-08-03 公開日 2021-11-17 最終更新日 2022-03-16 実験手法 ELECTRON MICROSCOPY (4.16 Å) 主引用文献 Cryo-EM structures and biochemical insights into heterotrimeric PCNA regulation of DNA ligase. Structure, 30, 2022
2CFM	ATP-DEPENDENT DNA LIGASE FROM PYROCOCCUS FURIOSUS 分子名称: ADENOSINE MONOPHOSPHATE, MAGNESIUM ION, THERMOSTABLE DNA LIGASE 著者 Nishida, H, Ishino, Y, Morikawa, K. 登録日 2006-02-22 公開日 2006-07-12 最終更新日 2019-02-06 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 The Closed Structure of an Archaeal DNA Ligase from Pyrococcus Furiosus. J.Mol.Biol., 360, 2006
8AK4	Structure of the C-terminally truncated NAD+-dependent DNA ligase from the poly-extremophile Deinococcus radiodurans 分子名称: DNA ligase, MANGANESE (II) ION, ZINC ION 著者 Fernandes, A, Williamson, A.K, Matias, P.M, Moe, E. 登録日 2022-07-29 公開日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.36 Å) 主引用文献 Structure/function studies of the NAD + -dependent DNA ligase from the poly-extremophile Deinococcus radiodurans reveal importance of the BRCT domain for DNA binding. Extremophiles, 27, 2023
4GLX	DNA ligase A in complex with inhibitor 分子名称: 2-amino-6-bromo-7-(trifluoromethyl)-1,8-naphthyridine-3-carboxamide, DNA (26-MER), DNA (5'-D(*AP*CP*AP*AP*TP*TP*GP*CP*GP*AP*CP*CP*C)-3'), ... 著者 Prade, L, Lange, R, Tidten-Luksch, N, Chambovey, A. 登録日 2012-08-15 公開日 2012-10-10 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structure-guided design, synthesis and biological evaluation of novel DNA ligase inhibitors with in vitro and in vivo anti-staphylococcal activity. Bioorg.Med.Chem.Lett., 22, 2012
1V9P	Crystal Structure Of Nad+-Dependent DNA Ligase 分子名称: ADENOSINE MONOPHOSPHATE, DNA ligase, ZINC ION 著者 Lee, J.Y, Chang, C, Song, H.K, Moon, J, Yang, J.K, Kim, H.K, Kwon, S.K, Suh, S.W. 登録日 2004-01-27 公開日 2004-03-30 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Crystal structure of NAD(+)-dependent DNA ligase: modular architecture and functional implications. Embo J., 19, 2000
2HIV	ATP-dependent DNA ligase from S. solfataricus 分子名称: Thermostable DNA ligase 著者 Pascal, J.M, Ellenberger, T. 登録日 2006-06-29 公開日 2006-11-07 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 A Flexible Interface between DNA Ligase and PCNA Supports Conformational Switching and Efficient Ligation of DNA. Mol.Cell, 24, 2006

 

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