PDB: 224004 件ウェブページステータス検索Chemie searchBIRD

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2NSG	Crystal structure of the mycothiol-dependent maleylpyruvate isomerase H52A mutant 分子名称: GLYCEROL, Hypothetical protein Cgl3021, SULFATE ION 著者 Chang, W.R, Wang, R. 登録日 2006-11-04 公開日 2007-04-10 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Crystal Structures and Site-directed Mutagenesis of a Mycothiol-dependent Enzyme Reveal a Novel Folding and Molecular Basis for Mycothiol-mediated Maleylpyruvate Isomerization J.Biol.Chem., 282, 2007
2OGE	x-ray structure of S. venezuelae DesV in its internal aldimine form 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, SODIUM ION, ... 著者 Holden, H.M, Burgie, E.S. 登録日 2007-01-05 公開日 2007-05-15 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Molecular architecture of DesV from Streptomyces venezuelae: A PLP-dependent transaminase involved in the biosynthesis of the unusual sugar desosamine. Protein Sci., 16, 2007
2OHN	X-ray crystal structure of beta secretase complexed with 4-(4-fluorobenzyl)piperidine 分子名称: 4-(4-FLUOROBENZYL)PIPERIDINE, Beta-secretase 1, DIMETHYL SULFOXIDE, ... 著者 Patel, S. 登録日 2007-01-10 公開日 2007-03-13 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Application of fragment screening by X-ray crystallography to beta-Secretase. J.Med.Chem., 50, 2007
2NVZ	RNA Polymerase II elongation complex with UTP, updated 11/2006 分子名称: 28-MER DNA template strand, 5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3', 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3', ... 著者 Wang, D, Bushnell, D.A, Westover, K.D, Kaplan, C.D, Kornberg, R.D. 登録日 2006-11-14 公開日 2006-12-19 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (4.3 Å) 主引用文献 Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis Cell(Cambridge,Mass.), 127, 2006
7O75	Yeast RNA polymerase II transcription pre-initiation complex with open promoter DNA 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ... 著者 Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P. 登録日 2021-04-13 公開日 2021-06-16 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening. Cell, 184, 2021
2NZE	Structure of beta-lactamase II from Bacillus cereus. R121H, C221S double mutant. Space group P3121. 分子名称: ACETIC ACID, Beta-lactamase II, GLYCEROL, ... 著者 Medrano Martin, F.J, Vila, A.J, Gonzalez, J.M. 登録日 2006-11-23 公開日 2007-05-29 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 The Zn2 position in metallo-beta-lactamases is critical for activity: a study on chimeric metal sites on a conserved protein scaffold. J.Mol.Biol., 373, 2007
7O5H	Ribosomal methyltransferase KsgA bound to small ribosomal subunit 分子名称: 16S rRNA, 30S ribosomal protein S11, 30S ribosomal protein S12, ... 著者 Stephan, N.C, Ries, A.B, Boehringer, D, Ban, N. 登録日 2021-04-08 公開日 2021-06-16 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Structural basis of successive adenosine modifications by the conserved ribosomal methyltransferase KsgA. Nucleic Acids Res., 49, 2021
4W2E	Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Gagnon, M.G, Lin, J, Steitz, T.A. 登録日 2014-06-04 公開日 2014-10-01 最終更新日 2023-07-26 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Crystal structure of elongation factor 4 bound to a clockwise ratcheted ribosome. Science, 345, 2014
7O72	Yeast RNA polymerase II transcription pre-initiation complex with closed promoter DNA 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, DNA-directed RNA polymerase II subunit RPB1, ... 著者 Schilbach, S, Aibara, S, Dienemann, C, Grabbe, F, Cramer, P. 登録日 2021-04-12 公開日 2021-06-16 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structure of RNA polymerase II pre-initiation complex at 2.9 angstrom defines initial DNA opening. Cell, 184, 2021
2O03	Crystal structure of FurB from M. tuberculosis- a Zinc uptake regulator 分子名称: ZINC ION, probable Zinc uptake regulation protein FurB 著者 Lucarelli, D, Russo, S, Pohl, E. 登録日 2006-11-27 公開日 2007-02-13 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.699 Å) 主引用文献 Crystal structure and function of the zinc uptake regulator FurB from Mycobacterium tuberculosis. J.Biol.Chem., 282, 2007
2O0G	Crystal structure of the H-NOX domain from Nostoc sp. PCC 7120 complexed to CO 分子名称: Alr2278 protein, CARBON MONOXIDE, PROTOPORPHYRIN IX CONTAINING FE 著者 Ma, X, van den Akker, F. 登録日 2006-11-27 公開日 2007-01-30 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.51 Å) 主引用文献 NO and CO differentially activate soluble guanylyl cyclase via a heme pivot-bend mechanism. Embo J., 26, 2007
1QIM	SPECIFIC CHEMICAL AND STRUCTURAL DAMAGE AT NINE TIME POINTS (POINT I) CAUSED BY INTENSE SYNCHROTRON RADIATION TO TORPEDO CALIFORNICA ACETYLCHOLINESTERASE 分子名称: ACETYLCHOLINESTERASE 著者 Kryger, G, Weik, M, Ravelli, R.B.G. 登録日 1999-06-14 公開日 2000-01-28 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Specific chemical and structural damage to proteins produced by synchrotron radiation. Proc.Natl.Acad.Sci.USA, 97, 2000
2O5W	Structure of the E. coli dihydroneopterin triphosphate pyrophosphohydrolase in complex with Sm+3 and pyrophosphate 分子名称: PYROPHOSPHATE, SAMARIUM (III) ION, SODIUM ION, ... 著者 Gabelli, S.B, Bianchet, M.A, Amzel, L.M. 登録日 2006-12-06 公開日 2007-08-28 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structure and function of the E. coli dihydroneopterin triphosphate pyrophosphatase: a Nudix enzyme involved in folate biosynthesis. Structure, 15, 2007
2OAZ	Human Methionine Aminopeptidase-2 Complexed with SB-587094 分子名称: COBALT (II) ION, N-(2-ISOPROPYLPHENYL)-3-[(2-THIENYLMETHYL)THIO]-1H-1,2,4-TRIAZOL-5-AMINE, human Methionine Amino Peptidase 2 著者 Marino Jr, J.P, Fisher, P.W, Hofmann, G.A, Kirkpatrick, R, Janson, C.A, Johnson, R.K, Ma, C, Mattern, M, Meek, T.D, Ryan, D, Schulz, C, Smith, W.W, Tew, D.G, Tomazek Jr, T.A, Veber, D.F, Xiong, W.C, Yamamoto, Y, Yamashita, K, Yang, G, Thompson, S.K. 登録日 2006-12-18 公開日 2007-06-19 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Highly potent inhibitors of methionine aminopeptidase-2 based on a 1,2,4-triazole pharmacophore. J.Med.Chem., 50, 2007
6JN9	Cryo-EM structure of glutamate dehydrogenase from Thermococcus profundus 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Glutamate dehydrogenase 著者 Oide, M, Kato, T, Oroguchi, T, Nakasako, M. 登録日 2019-03-14 公開日 2020-02-12 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Energy landscape of domain motion in glutamate dehydrogenase deduced from cryo-electron microscopy. Febs J., 287, 2020
6JNC	Cryo-EM structure of glutamate dehydrogenase from Thermococcus profundus 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Glutamate dehydrogenase 著者 Oide, M, Kato, T, Oroguchi, T, Nakasako, M. 登録日 2019-03-14 公開日 2020-02-12 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Energy landscape of domain motion in glutamate dehydrogenase deduced from cryo-electron microscopy. Febs J., 287, 2020
6UJI	Low resolution crystal structure (5.5 A) of the anthrax toxin protective antigen heptamer prepore D425A mutant 分子名称: Protective antigen PA-63 著者 Lovell, S, Mehzabeen, N, Battaile, K.P, Bann, J.G. 登録日 2019-10-03 公開日 2020-10-07 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (5.5 Å) 主引用文献 Structure of the anthrax protective antigen D425A dominant negative mutant reveals a stalled intermediate state of pore maturation. J.Mol.Biol., 2022
7SXN	Orb2A residues 1-9 MYNKFVNFI 分子名称: Orb2A residues 1-9 MYNKFVNFI 著者 Bowler, J.T, Sawaya, M.R, Boyer, D.R, Cascio, D, Eisenberg, D.S. 登録日 2021-11-23 公開日 2022-10-05 最終更新日 2024-05-22 実験手法 ELECTRON CRYSTALLOGRAPHY (1.05 Å) 主引用文献 Micro-electron diffraction structure of the aggregation-driving N terminus of Drosophila neuronal protein Orb2A reveals amyloid-like beta-sheets. J.Biol.Chem., 298, 2022
6Q87	Structure of Fucosylated D-antimicrobial peptide SB10 in complex with the Fucose-binding lectin PA-IIL at 2.541 Angstrom resolution 分子名称: 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid, AMINO GROUP, CALCIUM ION, ... 著者 Baeriswyl, S, Stocker, A, Reymond, J.-L. 登録日 2018-12-14 公開日 2019-03-20 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.541 Å) 主引用文献 X-ray Crystal Structures of Short Antimicrobial Peptides as Pseudomonas aeruginosa Lectin B Complexes. Acs Chem.Biol., 14, 2019
2OAR	Mechanosensitive Channel of Large Conductance (MscL) 分子名称: GOLD ION, Large-conductance mechanosensitive channel 著者 Rees, D.C, Chang, G, Spencer, R.H, Lee, A.T, Steinbacher, S, Strop, P. 登録日 2006-12-17 公開日 2007-01-09 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Structures of the Prokaryotic Mechanosensitive Channels MscL and MscS Current Topics in Membranes, 58, 2007
2OB1	ppm1 with 1,8-ANS 分子名称: Leucine carboxyl methyltransferase 1, PHOSPHATE ION 著者 Groves, M.R. 登録日 2006-12-18 公開日 2007-01-30 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 A method for the general identification of protein crystals in crystallization experiments using a noncovalent fluorescent dye. Acta Crystallogr.,Sect.D, 63, 2007
6XHX	Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 16S Ribosomal RNA, 23S Ribosomal RNA, ... 著者 Svetlov, M.S, Syroegin, E.A, Aleksandrova, E.V, Atkinson, G.C, Gregory, S.T, Mankin, A.S, Polikanov, Y.S. 登録日 2020-06-19 公開日 2020-12-23 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Structure of Erm-modified 70S ribosome reveals the mechanism of macrolide resistance. Nat.Chem.Biol., 17, 2021
6Q9H	HDM2 (17-111, WILD TYPE) COMPLEXED WITH COMPOUND 11 AT 2.0A; Structural states of Hdm2 and HdmX: X-ray elucidation of adaptations and binding interactions for different chemical compound classes 分子名称: (4~{S})-5-(3-chloranyl-2-fluoranyl-phenyl)-4-(4-chloranyl-2-methyl-phenyl)-3-propan-2-yl-1,4-dihydropyrrolo[3,4-c]pyrazol-6-one, E3 ubiquitin-protein ligase Mdm2 著者 Kallen, J. 登録日 2018-12-18 公開日 2019-05-15 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural States of Hdm2 and HdmX: X-ray Elucidation of Adaptations and Binding Interactions for Different Chemical Compound Classes. Chemmedchem, 14, 2019
7T31	X-ray Structure of Clostridiodies difficile PilW 分子名称: Maltose/maltodextrin-binding periplasmic protein,Putative pilin protein chimera 著者 Ronish, L.A, Piepenbrink, K.H. 登録日 2021-12-06 公開日 2022-10-19 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Recognition of extracellular DNA by type IV pili promotes biofilm formation by Clostridioides difficile. J.Biol.Chem., 298, 2022
7T3H	MicroED structure of Dynobactin 分子名称: TRP-ASN-SER-ASN-VAL-HIS-SER-TYR-ARG-PHE 著者 Yoo, B.-K, Kaiser, J.T, Rees, D.C, Miller, R.D, Iinishi, A, Lewis, K, Bowman, S. 登録日 2021-12-07 公開日 2022-10-19 実験手法 ELECTRON CRYSTALLOGRAPHY (1.05 Å) 主引用文献 Computational identification of a systemic antibiotic for gram-negative bacteria. Nat Microbiol, 7, 2022

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