Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3AXM
DownloadVisualize
BU of 3axm by Molmil
Structure of rice Rubisco in complex with 6PG
分子名称: 6-PHOSPHOGLUCONIC ACID, MAGNESIUM ION, Ribulose bisphosphate carboxylase large chain, ...
著者Matsumura, H, Mizohata, E, Ishida, H, Kogami, A, Ueno, T, Makino, A, Inoue, T, Yokota, A, Mae, T, Kai, Y.
登録日2011-04-11
公開日2012-04-11
最終更新日2013-06-05
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of rice Rubisco and implications for activation induced by positive effectors NADPH and 6-phosphogluconate
J.Mol.Biol., 422, 2012
5VC3
DownloadVisualize
BU of 5vc3 by Molmil
CRYSTAL STRUCTURE OF HUMAN WEE1 KINASE DOMAIN IN COMPLEX WITH BOSUTINIB
分子名称: 1,2-ETHANEDIOL, 4-[(2,4-dichloro-5-methoxyphenyl)amino]-6-methoxy-7-[3-(4-methylpiperazin-1-yl)propoxy]quinoline-3-carbonitrile, CHLORIDE ION, ...
著者Zhu, J.-Y, Schonbrunn, E.
登録日2017-03-30
公開日2017-08-23
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Structural Basis of Wee Kinases Functionality and Inactivation by Diverse Small Molecule Inhibitors.
J. Med. Chem., 60, 2017
7YKE
DownloadVisualize
BU of 7yke by Molmil
Crystal structure of chondroitin ABC lyase I in complex with chondroitin disaccharide 4,6-sulfate
分子名称: 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-4,6-di-O-sulfo-beta-D-galactopyranose, Chondroitin sulfate ABC endolyase, MAGNESIUM ION
著者Takashima, M, Watanabe, I, Miyanaga, A, Eguchi, T.
登録日2022-07-22
公開日2022-11-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献Biochemical and crystallographic assessments of the effect of 4,6-O-disulfated disaccharide moieties in chondroitin sulfate E on chondroitinase ABC I activity.
Febs J., 290, 2023
1ZV9
DownloadVisualize
BU of 1zv9 by Molmil
Crystal structure analysis of a type II cohesin domain from the cellulosome of Acetivibrio cellulolyticus- SeMet derivative
分子名称: 1,2-ETHANEDIOL, 1,3-PROPANDIOL, ACETIC ACID, ...
著者Noach, I, Rosenheck, S, Lamed, R, Shimon, L, Bayer, E, Frolow, F.
登録日2005-06-01
公開日2006-06-13
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.28 Å)
主引用文献Intermodular linker flexibility revealed from crystal structures of adjacent cellulosomal cohesins of Acetivibrio cellulolyticus.
J.Mol.Biol., 391, 2009
5GRK
DownloadVisualize
BU of 5grk by Molmil
Crystal structure of Uracil DNA glycosylase -Xanthine complex from Bradyrhizobium diazoefficiens
分子名称: Blr0248 protein, XANTHINE
著者Patil, V.V, Ullas, V.C, Ahn, W, Varshney, U, Woo, E.
登録日2016-08-11
公開日2017-05-03
最終更新日2017-06-14
実験手法X-RAY DIFFRACTION (2.804 Å)
主引用文献Uracil DNA glycosylase (UDG) activities in Bradyrhizobium diazoefficiens: characterization of a new class of UDG with broad substrate specificity
Nucleic Acids Res., 45, 2017
2Q08
DownloadVisualize
BU of 2q08 by Molmil
Crystal structure of the protein BH0493 from Bacillus halodurans C-125 complexed with ZN
分子名称: BH0493 protein, ZINC ION
著者Fedorov, A.A, Fedorov, E.V, Patskovsky, Y, Sauder, J.M, Burley, S.K, Raushel, F, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2007-05-21
公開日2007-06-19
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of Glucoronate Isomerase from Bacillus halodurans.
To be Published
2CLR
DownloadVisualize
BU of 2clr by Molmil
THREE DIMENSIONAL STRUCTURE OF A PEPTIDE EXTENDING OUT ONE END OF A CLASS I MHC BINDING SITE
分子名称: BETA 2-MICROGLOBULIN, CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-A 0201) (ALPHA CHAIN), DECAMERIC PEPTIDE FROM CALRETICULIN
著者Collins, E.J, Garboczi, D.N, Wiley, D.C.
登録日1994-08-01
公開日1995-03-31
最終更新日2024-06-05
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Three-dimensional structure of a peptide extending from one end of a class I MHC binding site.
Nature, 371, 1994
2Q3H
DownloadVisualize
BU of 2q3h by Molmil
The crystal structure of RhouA in the GDP-bound state.
分子名称: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Ras homolog gene family, ...
著者Gileadi, C, Yang, X, Papagrigoriou, E, Elkins, J, Zhao, Y, Bray, J, Gileadi, O, Umeano, C, Ugochukwu, E, Uppenberg, J, Bunkoczi, G, von Delft, F, Pike, A.C.W, Phillips, C, Savitsky, P, Fedorov, O, Edwards, A, Weigelt, J, Arrowsmith, C.H, Sundstrom, M, Doyle, D.A, Structural Genomics Consortium (SGC)
登録日2007-05-30
公開日2007-06-19
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献The crystal structure of RhouA in the GDP-bound state.
To be Published
2Q3R
DownloadVisualize
BU of 2q3r by Molmil
Ensemble refinement of the protein crystal structure of At1g76680 from Arabidopsis thaliana
分子名称: 12-oxophytodienoate reductase 1, FLAVIN MONONUCLEOTIDE
著者Levin, E.J, Kondrashov, D.A, Wesenberg, G.E, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG)
登録日2007-05-30
公開日2007-06-19
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Ensemble refinement of protein crystal structures: validation and application.
Structure, 15, 2007
2Q4F
DownloadVisualize
BU of 2q4f by Molmil
Ensemble refinement of the crystal structure of putative histidine-containing phosphotransfer protein from rice, Ak104879
分子名称: Histidine-containing phosphotransfer protein 1
著者Levin, E.J, Kondrashov, D.A, Wesenberg, G.E, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG)
登録日2007-05-31
公開日2007-06-19
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Ensemble refinement of protein crystal structures: validation and application.
Structure, 15, 2007
2Q4M
DownloadVisualize
BU of 2q4m by Molmil
Ensemble refinement of the crystal structure of protein from Arabidopsis thaliana At5g01750
分子名称: 1,2-ETHANEDIOL, Protein At5g01750
著者Levin, E.J, Kondrashov, D.A, Wesenberg, G.E, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG)
登録日2007-05-31
公開日2007-06-19
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Ensemble refinement of protein crystal structures: validation and application.
Structure, 15, 2007
3H3U
DownloadVisualize
BU of 3h3u by Molmil
Crystal structure of CRP (cAMP receptor Protein) from Mycobacterium tuberculosis
分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY CRP/FNR-FAMILY), SULFATE ION
著者Kumar, P, Joshi, D.C, Akif, M, Akhter, Y, Hasnain, S.E, Mande, S.C.
登録日2009-04-17
公開日2010-02-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Mapping conformational transitions in cyclic AMP receptor protein: crystal structure and normal-mode analysis of Mycobacterium tuberculosis apo-cAMP receptor protein
Biophys.J., 98, 2010
4K84
DownloadVisualize
BU of 4k84 by Molmil
Crystal structure of human ceramide-1-phosphate transfer protein (CPTP) in complex with 16:0 ceramide-1-phosphate (16:0-C1P)
分子名称: (2S,3R,4E)-2-(hexadecanoylamino)-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate, Glycolipid transfer protein domain-containing protein 1
著者Simanshu, D.K, Brown, R.E, Patel, D.J.
登録日2013-04-17
公開日2013-07-17
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.897 Å)
主引用文献Non-vesicular trafficking by a ceramide-1-phosphate transfer protein regulates eicosanoids.
Nature, 500, 2013
4KT2
DownloadVisualize
BU of 4kt2 by Molmil
Crystal structure of d-mannonate dehydratase from chromohalobacter salexigens complexed with mg and glycerol
分子名称: CHLORIDE ION, D-mannonate dehydratase, GLYCEROL, ...
著者Fedorov, A.A, Fedorov, E.V, Wichelecki, D, Gerlt, J.A, Almo, S.C.
登録日2013-05-19
公開日2014-05-21
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.798 Å)
主引用文献Crystal structure of d-mannonate dehydratase from chromohalobacter salexigens complexed with mg and glycerol
To be Published
1PZI
DownloadVisualize
BU of 1pzi by Molmil
Heat-Labile Enterotoxin B-Pentamer Complexed With Nitrophenyl Galactoside 2a
分子名称: Heat-labile Enterotoxin B subunit, N-(2-MORPHOLIN-4-YL-1-MORPHOLIN-4-YLMETHYL-ETHYL)-3-NITRO-5-(3,4,5-TRIHYDROXY-6-HYDROXYMETHYL-TETRAHYDRO-PYRAN-2-YLOXY)-BENZAMIDE
著者Mitchell, D.D, Pickens, J.C, Korotkov, K, Fan, E, Hol, W.G.J.
登録日2003-07-11
公開日2004-03-09
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献3,5-Substituted phenyl galactosides as leads in designing effective cholera toxin antagonists; synthesis and crystallographic studies
Bioorg.Med.Chem., 12, 2004
2Q9F
DownloadVisualize
BU of 2q9f by Molmil
Crystal structure of human cytochrome P450 46A1 in complex with cholesterol-3-sulphate
分子名称: CHOLEST-5-EN-3-YL HYDROGEN SULFATE, Cytochrome P450 46A1, GLYCEROL, ...
著者White, M.A, Mast, N.V, Johnson, E.F, Stout, C.D, Pikuleva, I.A.
登録日2007-06-12
公開日2008-06-17
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures of substrate-bound and substrate-free cytochrome P450 46A1, the principal cholesterol hydroxylase in the brain.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3WSA
DownloadVisualize
BU of 3wsa by Molmil
The Tuberculosis Drug SQ109 Inhibits Trypanosoma cruzi Cell Proliferation and acts Synergistically with Posaconazole
分子名称: N-[(2Z)-3,7-dimethylocta-2,6-dien-1-yl]-N'-[(1R,3S,5R,7R)-tricyclo[3.3.1.1~3,7~]dec-2-yl]ethane-1,2-diamine, Squalene synthase
著者Shang, N, Li, Q, Huang, C.H, Oldfield, E, Guo, R.T.
登録日2014-03-05
公開日2015-04-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献SQ109, a new drug lead for Chagas disease.
Antimicrob.Agents Chemother., 59, 2015
2PLD
DownloadVisualize
BU of 2pld by Molmil
NUCLEAR MAGNETIC RESONANCE STRUCTURE OF AN SH2 DOMAIN OF PHOSPHOLIPASE C-GAMMA1 COMPLEXED WITH A HIGH AFFINITY BINDING PEPTIDE
分子名称: PHOSPHOLIPASE C GAMMA-1, C-TERMINAL SH2 DOMAIN, PHOSPHOPEPTIDE FROM PDGF
著者Pascal, S.M, Singer, A.U, Gish, G, Yamazaki, T, Shoelson, S.E, Pawson, T, Kay, L.E, Forman-Kay, J.D.
登録日1994-08-19
公開日1995-01-26
最終更新日2017-11-29
実験手法SOLUTION NMR
主引用文献Nuclear magnetic resonance structure of an SH2 domain of phospholipase C-gamma 1 complexed with a high affinity binding peptide.
Cell(Cambridge,Mass.), 77, 1994
5VXX
DownloadVisualize
BU of 5vxx by Molmil
Cryo-EM reconstruction of Neisseria gonorrhoeae Type IV pilus
分子名称: Fimbrial protein, PHOSPHORIC ACID MONO-(2-AMINO-ETHYL) ESTER, alpha-D-galactopyranose-(1-3)-2,4-bisacetamido-2,4,6-trideoxy-beta-D-glucopyranose
著者Wang, F, Orlova, A, Altindal, T, Craig, L, Egelman, E.H.
登録日2017-05-24
公開日2017-07-12
最終更新日2020-07-29
実験手法ELECTRON MICROSCOPY (5.1 Å)
主引用文献Cryoelectron Microscopy Reconstructions of the Pseudomonas aeruginosa and Neisseria gonorrhoeae Type IV Pili at Sub-nanometer Resolution.
Structure, 25, 2017
6D22
DownloadVisualize
BU of 6d22 by Molmil
Crystal structure of Tyrosine-protein kinase receptor
分子名称: Tyrosine-protein kinase receptor
著者Greasley, S.E, Brown, D.
登録日2018-04-12
公開日2018-05-02
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.46 Å)
主引用文献Discovery of Allosteric, Potent, Subtype Selective, and Peripherally Restricted TrkA Kinase Inhibitors.
J. Med. Chem., 62, 2019
1SZX
DownloadVisualize
BU of 1szx by Molmil
Role Of Hydrogen Bonding In The Active Site Of Human Manganese Superoxide Dismutase
分子名称: MANGANESE (II) ION, Superoxide dismutase [Mn], mitochondrial
著者Greenleaf, W.B, Perry, J.J, Hearn, A.S, Cabelli, D.E, Lepock, J.R, Stroupe, M.E, Tainer, J.A, Nick, H.S, Silverman, D.N.
登録日2004-04-06
公開日2004-04-27
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Role of hydrogen bonding in the active site of human manganese superoxide dismutase.
Biochemistry, 43, 2004
5W57
DownloadVisualize
BU of 5w57 by Molmil
Structure of Holo AztC
分子名称: Periplasmic solute binding protein, ZINC ION
著者Avalos, D, Yukl, E.T.
登録日2017-06-14
公開日2017-09-20
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Mechanisms of zinc binding to the solute-binding protein AztC and transfer from the metallochaperone AztD.
J. Biol. Chem., 292, 2017
4JCR
DownloadVisualize
BU of 4jcr by Molmil
ClpP1 N165D mutant from Listeria monocytogenes
分子名称: ATP-dependent Clp protease proteolytic subunit
著者Zeiler, E, List, A, Alte, F, Gersch, M, Wachtel, R, Groll, M, Sieber, S.
登録日2013-02-22
公開日2013-06-12
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural and functional insights into caseinolytic proteases reveal an unprecedented regulation principle of their catalytic triad.
Proc.Natl.Acad.Sci.USA, 110, 2013
5W5F
DownloadVisualize
BU of 5w5f by Molmil
Cryo-EM structure of the T4 tail tube
分子名称: Tail tube protein gp19
著者Zheng, W, Wang, F, Taylor, N.M, Guerrero-Ferreira, R.C, Leiman, P.G, Egelman, E.H.
登録日2017-06-15
公開日2017-08-16
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Refined Cryo-EM Structure of the T4 Tail Tube: Exploring the Lowest Dose Limit.
Structure, 25, 2017
7LMK
DownloadVisualize
BU of 7lmk by Molmil
Crystal structure of bovine DNMT1 BAH1 domain in complex with H4K20me3
分子名称: DNA (cytosine-5)-methyltransferase 1, Histone H4, ZINC ION
著者Ren, W, Song, J.
登録日2021-02-05
公開日2021-02-17
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.647 Å)
主引用文献DNMT1 reads heterochromatic H4K20me3 to reinforce LINE-1 DNA methylation.
Nat Commun, 12, 2021

224004

件を2024-08-21に公開中

PDB statisticsPDBj update infoContact PDBjnumon