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8JB8
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Crystal structure of CMY-185 complex with ceftazidime
分子名称: ACYLATED CEFTAZIDIME, Beta-lactamase
著者Kawai, A, Doi, Y.
登録日2023-05-08
公開日2023-12-13
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural insights into the molecular mechanism of high-level ceftazidime-avibactam resistance conferred by CMY-185.
Mbio, 15, 2024
3SQC
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BU of 3sqc by Molmil
SQUALENE-HOPENE CYCLASE
分子名称: SQUALENE--HOPENE CYCLASE
著者Wendt, K.U, Schulz, G.E.
登録日1998-09-04
公開日1999-05-18
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献The structure of the membrane protein squalene-hopene cyclase at 2.0 A resolution.
J.Mol.Biol., 286, 1999
6ZG7
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BU of 6zg7 by Molmil
bovine ATP synthase rotor domain, state 1
分子名称: ATP synthase F(0) complex subunit C2, mitochondrial, ATP synthase subunit delta, ...
著者Spikes, T, Montgomery, M.G, Walker, J.E.
登録日2020-06-18
公開日2020-09-09
最終更新日2020-09-30
実験手法ELECTRON MICROSCOPY (3.49 Å)
主引用文献Structure of the dimeric ATP synthase from bovine mitochondria.
Proc.Natl.Acad.Sci.USA, 117, 2020
2J10
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BU of 2j10 by Molmil
p53 tetramerization domain mutant T329F Q331K
分子名称: CELLULAR TUMOR ANTIGEN P53
著者Carbajo, R.J, Mora, P, Sanchez del Pino, M.M, Perez-Paya, E, Pineda-Lucena, A.
登録日2006-08-08
公開日2007-08-28
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solvent-exposed residues located in the beta-sheet modulate the stability of the tetramerization domain of p53--a structural and combinatorial approach.
Proteins, 71, 2008
8TID
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BU of 8tid by Molmil
Combined linker domain of N-DRC and associated proteins Tetrahymena
分子名称: AAA family ATPase CDC48 subfamily protein, CFAP20, Calmodulin 7-2, ...
著者Ghanaeian, A.G, Majhi, S.M, McCaffrey, C.M, Nami, B.N, Black, C.B, Yang, S.K, Legal, T.L, Papoulas, O.P, Janowska, M.J, Valente-Paterno, M.V, Marcotte, E.M, Wloga, D.W, Bui, K.H.
登録日2023-07-19
公開日2023-09-27
最終更新日2024-04-03
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Integrated modeling of the Nexin-dynein regulatory complex reveals its regulatory mechanism.
Nat Commun, 14, 2023
6Z37
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BU of 6z37 by Molmil
TodX monoaromatic hydrocarbon channel deltaS2 mutant
分子名称: TodX
著者van den Berg, B.
登録日2020-05-19
公開日2020-11-04
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献Uptake of monoaromatic hydrocarbons during biodegradation by FadL channel-mediated lateral diffusion.
Nat Commun, 11, 2020
6ZBB
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BU of 6zbb by Molmil
bovine ATP synthase Fo domain
分子名称: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ATP synthase F(0) complex subunit B1, mitochondrial, ...
著者Spikes, T, Montgomery, M.G, Walker, J.E.
登録日2020-06-08
公開日2020-09-09
最終更新日2020-09-30
実験手法ELECTRON MICROSCOPY (3.61 Å)
主引用文献Structure of the dimeric ATP synthase from bovine mitochondria.
Proc.Natl.Acad.Sci.USA, 117, 2020
6ZIU
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BU of 6ziu by Molmil
bovine ATP synthase stator domain, state 3
分子名称: ATP synthase F(0) complex subunit B1, mitochondrial, ATP synthase protein 8, ...
著者Spikes, T.E, Montgomery, M.G, Walker, J.E.
登録日2020-06-26
公開日2020-09-09
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (6.02 Å)
主引用文献Structure of the dimeric ATP synthase from bovine mitochondria.
Proc.Natl.Acad.Sci.USA, 117, 2020
6YYE
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BU of 6yye by Molmil
TREM2 extracellular domain (19-131) in complex with single-chain variable fragment (scFv-2)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, TREM2 Single chain variable 2, Triggering receptor expressed on myeloid cells 2
著者Szykowska, A, Preger, C, Krojer, T, Mukhopadhyay, S.M.M, McKinley, G, Graslund, S, Wigren, E, Persson, H, von Delft, F, Arrowsmith, C.H, Edwards, A, Bountra, C, Di Daniel, E, Burgess-Brown, N, Bullock, A.
登録日2020-05-04
公開日2021-02-17
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3.36 Å)
主引用文献Selection and structural characterization of anti-TREM2 scFvs that reduce levels of shed ectodomain.
Structure, 29, 2021
6OEL
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BU of 6oel by Molmil
Engineered Fab bound to IL-4 receptor
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Cytokine receptor common subunit gamma, Interleukin-4 receptor subunit alpha, ...
著者Jude, K.M, Moraga, I, Spangler, J.B, Garcia, K.C.
登録日2019-03-27
公開日2019-08-07
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献A strategy for the selection of monovalent antibodies that span protein dimer interfaces.
J.Biol.Chem., 294, 2019
4H3G
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BU of 4h3g by Molmil
Structure of BACE Bound to 2-((7aR)-7a-(4-(3-cyanophenyl)thiophen-2-yl)-2-imino-3-methyl-4-oxohexahydro-1H-pyrrolo[3,4-d]pyrimidin-6(2H)-yl)nicotinonitrile
分子名称: 2-{(2E,4aR,7aR)-7a-[4-(3-cyanophenyl)thiophen-2-yl]-2-imino-3-methyl-4-oxooctahydro-6H-pyrrolo[3,4-d]pyrimidin-6-yl}pyridine-3-carbonitrile, Beta-secretase 1, L(+)-TARTARIC ACID
著者Strickland, C, Mandal, M.
登録日2012-09-13
公開日2012-11-07
最終更新日2012-11-21
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Design and Validation of Bicyclic Iminopyrimidinones As Beta Amyloid Cleaving Enzyme-1 (BACE1) Inhibitors: Conformational Constraint to Favor a Bioactive Conformation.
J.Med.Chem., 55, 2012
6Z79
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Variant Surface Glycoprotein VSGsur, I3C ("Magic Triangle") derivative used for phasing of the structure and subsequently as a model for molecular replacement of native, mutants, and drug soaks.
分子名称: 5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid, Variant surface glycoprotein Sur, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Zeelen, J.P, Straaten van, M, Stebbins, C.E.
登録日2020-05-30
公開日2021-03-17
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Structure of trypanosome coat protein VSGsur and function in suramin resistance.
Nat Microbiol, 6, 2021
2J0Z
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BU of 2j0z by Molmil
p53 tetramerization domain wild type
分子名称: CELLULAR TUMOR ANTIGEN P53
著者Carbajo, R.J, Mora, P, Sanchez del Pino, M.M, Perez-Paya, E, Pineda-Lucena, A.
登録日2006-08-08
公開日2007-08-28
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solvent-exposed residues located in the beta-sheet modulate the stability of the tetramerization domain of p53--a structural and combinatorial approach.
Proteins, 71, 2008
6Z8H
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BU of 6z8h by Molmil
Crystal structure of Variant Surface Glycoprotein VSG13
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, SULFATE ION, Variant surface glycoprotein MITat 1.13, ...
著者Stebbins, C.E, Hempelmann, A, Van Straaten, M, Zeelen, J.
登録日2020-06-02
公開日2021-03-17
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.38 Å)
主引用文献Structure of trypanosome coat protein VSGsur and function in suramin resistance.
Nat Microbiol, 6, 2021
7U51
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BU of 7u51 by Molmil
Nucleosome core particle with AP-site at SHL-6
分子名称: DNA (145-MER), Histone H2A type 1, Histone H2B type 1-C/E/F/G/I, ...
著者Freudenthal, B.D, Weaver, T.M.
登録日2022-03-01
公開日2022-09-07
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural basis for APE1 processing DNA damage in the nucleosome.
Nat Commun, 13, 2022
6Z8G
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BU of 6z8g by Molmil
Crystal structure of VSG13 soaked in 0.5 M used to phase VSG13 to solve the structure.
分子名称: BROMIDE ION, SULFATE ION, Variant surface glycoprotein MITat 1.13, ...
著者Stebbins, C.E, Hempelmann, A, Van Straaten, M, Zeelen, J.
登録日2020-06-02
公開日2021-03-17
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Structure of trypanosome coat protein VSGsur and function in suramin resistance.
Nat Microbiol, 6, 2021
7U52
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BU of 7u52 by Molmil
nucleosome core particle with AP-site at SHL-6.5
分子名称: DNA (145-MER), Histone H2A type 1, Histone H2B type 1-C/E/F/G/I, ...
著者Freudenthal, B.D, Weaver, T.M.
登録日2022-03-01
公開日2022-09-07
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural basis for APE1 processing DNA damage in the nucleosome.
Nat Commun, 13, 2022
4HA5
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BU of 4ha5 by Molmil
Structure of BACE Bound to (S)-3-(5-(2-imino-1,4-dimethyl-6-oxohexahydropyrimidin-4-yl)thiophen-3-yl)benzonitrile
分子名称: 3-{5-[(2E,4S)-2-imino-1,4-dimethyl-6-oxohexahydropyrimidin-4-yl]thiophen-3-yl}benzonitrile, Beta-secretase 1, L(+)-TARTARIC ACID
著者Strickland, C, Mandal, M.
登録日2012-09-25
公開日2012-10-17
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Design and Validation of Bicyclic Iminopyrimidinones As Beta Amyloid Cleaving Enzyme-1 (BACE1) Inhibitors: Conformational Constraint to Favor a Bioactive Conformation.
J.Med.Chem., 55, 2012
7U50
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BU of 7u50 by Molmil
APE1 bound to a nucleosome core particle with AP-site at SHL-6
分子名称: DNA (144-MER), DNA (145-MER), DNA-(apurinic or apyrimidinic site) endonuclease, ...
著者Weaver, T.M, Freudenthal, B.D.
登録日2022-03-01
公開日2022-09-07
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural basis for APE1 processing DNA damage in the nucleosome.
Nat Commun, 13, 2022
6ZDU
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BU of 6zdu by Molmil
Structure of telomerase from Candida albicans in complexe with TWJ fragment of telomeric RNA
分子名称: Chains: C,D, Telomerase reverse transcriptase
著者Zhai, L, Rety, S, Chen, W.F, Auguin, D, Xi, X.G.
登録日2020-06-15
公開日2021-04-28
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.45 Å)
主引用文献Crystal structures of N-terminally truncated telomerase reverse transcriptase from fungi‡.
Nucleic Acids Res., 49, 2021
6Z4R
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BU of 6z4r by Molmil
sperm whale myoglobin mutant (H64V V64A) bearing the non-canonical amino acid 3-thienylalanine as axial heme ligand
分子名称: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
著者Tinzl, M, Hilvert, D, Mittl, P.R.E.
登録日2020-05-25
公開日2021-04-28
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Noncanonical Heme Ligands Steer Carbene Transfer Reactivity in an Artificial Metalloenzyme*.
Angew.Chem.Int.Ed.Engl., 60, 2021
6ZCC
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BU of 6zcc by Molmil
X-ray structure of the Haloalkane dehalogenase HOB (HaloTag7-based Oligonucleotide Binder) labeled with a chloroalkane-tetramethylrhodamine fluorophore substrate
分子名称: ACETATE ION, CALCIUM ION, Haloalkane dehalogenase, ...
著者Tarnawski, M, Johnsson, K, Hiblot, J.
登録日2020-06-10
公開日2021-04-21
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献Kinetic and Structural Characterization of the Self-Labeling Protein Tags HaloTag7, SNAP-tag, and CLIP-tag.
Biochemistry, 60, 2021
6Z4T
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BU of 6z4t by Molmil
sperm whale myoglobin mutant (H64V V64A) bearing the non-canonical amino acid 2-Amino-3-(thiazol-5-yl)propanoic acid as axial heme ligand
分子名称: Myoglobin, OXYGEN MOLECULE, PROTOPORPHYRIN IX CONTAINING FE
著者Tinzl, M, Hilvert, D, Mittl, P.R.E.
登録日2020-05-25
公開日2021-04-28
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.23 Å)
主引用文献Noncanonical Heme Ligands Steer Carbene Transfer Reactivity in an Artificial Metalloenzyme*.
Angew.Chem.Int.Ed.Engl., 60, 2021
6ZD2
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BU of 6zd2 by Molmil
Structure of apo telomerase from Candida Tropicalis truncated from C-terminal domain
分子名称: SODIUM ION, Telomerase reverse transcriptase
著者Zhai, L, Rety, S, Chen, W.F, Auguin, D, Xi, X.G.
登録日2020-06-13
公開日2021-04-28
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.84 Å)
主引用文献Crystal structures of N-terminally truncated telomerase reverse transcriptase from fungi‡.
Nucleic Acids Res., 49, 2021
6ZDQ
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Structure of telomerase from Candida albicans in complexe with TWJ fragment of telomeric RNA
分子名称: RNA, Telomerase reverse transcriptase
著者Zhai, L, Rety, S, Chen, W.F, Auguin, D, Xi, X.G.
登録日2020-06-15
公開日2021-04-28
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.98 Å)
主引用文献Crystal structures of N-terminally truncated telomerase reverse transcriptase from fungi‡.
Nucleic Acids Res., 49, 2021

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