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8I3Y
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Crystal structure of ASCT from Trypanosoma brucei in complex with Succinyl-CoA.
分子名称: CALCIUM ION, SUCCINIC ACID, SUCCINYL-COENZYME A, ...
著者Mochizuki, K, Inaoka, D.K, Fukuda, K, Kurasawa, H, Iyoda, K, Nakai, U, Harada, S, Balogun, E.O, Mazet, M, Millerioux, Y, Bringaud, F, Boshart, M, Hirayama, K, Kita, K, Shiba, T.
登録日2023-01-18
公開日2024-01-31
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of ASCT from Trypanosoma brucei in complex with Succinyl-CoA.
To Be Published
5M84
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Translation initiation factor 4E in complex with (SP)-m2(7,2'O)GppSpA mRNA 5' cap analog
分子名称: Eukaryotic translation initiation factor 4E, GLYCEROL, [[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-sulfanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanyl-purin-7-ium-9-yl)-4-methoxy-3-oxidanyl-oxolan-2-yl]methyl hydrogen phosphate
著者Warminski, M, Nowak, E, Kowalska, J, Jemielity, J, Nowotny, M.
登録日2016-10-28
公開日2017-12-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Translation initiation factor 4E in complex with (SP)-m2(7,2'O)GppSpA mRNA 5' cap analog
To Be Published
8F4P
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SARS-CoV-2 spike protein trimer (down conformation) bound with a nanobody
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Anti-S1 Nanobody, ...
著者Laughlin, Z.T, Patel, A, Ortlund, E.A.
登録日2022-11-11
公開日2023-11-15
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献SARS-CoV-2 spike protein (down conformation) bound with a nanobody
To Be Published
2RMB
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BU of 2rmb by Molmil
Crystal structures of cyclophilin A complexed with cyclosporin A and N-methyl-4-[(E)-2-butenyl]-4,4-dimethylthreonine cyclosporin A
分子名称: CYCLOSPORIN A, PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
著者Ke, H, Mayrose, D.
登録日1994-01-07
公開日1995-02-07
最終更新日2017-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structures of Cyclophilin a Complexed with Cyclosporin a and N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A.
Structure, 2, 1994
1FQE
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CRYSTAL STRUCTURES OF MUTANT (K206A) THAT ABOLISH THE DILYSINE INTERACTION IN THE N-LOBE OF HUMAN TRANSFERRIN
分子名称: CARBONATE ION, FE (III) ION, POTASSIUM ION, ...
著者Nurizzo, D, Baker, H.M, Baker, E.N.
登録日2000-09-04
公開日2001-05-16
最終更新日2021-11-03
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structures and iron release properties of mutants (K206A and K296A) that abolish the dilysine interaction in the N-lobe of human transferrin.
Biochemistry, 40, 2001
1FTD
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BU of 1ftd by Molmil
5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'-SYMMETRIC BIS-BENZIMIDAZOLE COMPLEX
分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION, [3-(4-{2'-[4-(3-DIMETHYLAMINO-PROPOXY)-PHENYL]-3H,3'H-[5,5']BIBENZOIMIDAZOLYL-2-YL}-PHENOXY)-PROPYL]-DIMETHYL-AMINE
著者Mann, J, Baron, A, Opoku-Boahen, Y, Johansson, E, Parkinson, G, Kelland, L.R, Neidle, S.
登録日2000-09-12
公開日2001-02-26
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A new class of symmetric bisbenzimidazole-based DNA minor groove-binding agents showing antitumor activity.
J.Med.Chem., 44, 2001
1NWN
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Crystals of CO-HbI in which the structure was converted to its unligated state, and then converted back to its original CO-ligated state.
分子名称: CARBON MONOXIDE, PROTOPORPHYRIN IX CONTAINING FE, globin I
著者Knapp, J.E, Royer JR, W.E.
登録日2003-02-06
公開日2003-08-26
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Ligand-linked structural transitions in crystals of a cooperative dimeric hemoglobin.
Biochemistry, 42, 2003
1F92
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UROKINASE PLASMINOGEN ACTIVATOR B CHAIN-UKI-1D COMPLEX
分子名称: SULFATE ION, UROKINASE-TYPE PLASMINOGEN ACTIVATOR, [2,4,6-TRIISOPROPYL-PHENYLSULFONYL-L-[3-AMIDINO-PHENYLALANINYL]]-N'-BETA-ALANINYL-PIPERAZINE
著者Zeslawska, E, Schweinitz, A, Karcher, A, Sondermann, P, Sperl, S, Sturzebecher, J, Jacob, U.
登録日2000-07-06
公開日2001-07-06
最終更新日2021-11-03
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystals of the urokinase type plasminogen activator variant beta(c)-uPAin complex with small molecule inhibitors open the way towards structure-based drug design.
J.Mol.Biol., 301, 2000
6S88
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Fumarate hydratase of Mycobacterium tuberculosis in complex with formate and allosteric modulator N-(2-Methoxy-5-((1,2,4,5-tetrahydro-3H-benzo[d]azepin-3-yl)sulfonyl)phenyl)-2-(4-oxo-3,4-dihydrophthalazin-1-yl)acetamide
分子名称: FORMIC ACID, Fumarate hydratase class II, MAGNESIUM ION, ...
著者Whitehouse, A.J, Libardo, M.D, Kasbekar, M, Brear, P, Fischer, G, Thomas, C.J, Barry, C.E, Boshoff, H.I, Coyne, A.G, Abell, C.
登録日2019-07-08
公開日2019-09-25
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Targeting of Fumarate Hydratase fromMycobacterium tuberculosisUsing Allosteric Inhibitors with a Dimeric-Binding Mode.
J.Med.Chem., 62, 2019
6RK1
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Crystal structure of TSP1 domain from CCN3
分子名称: CCN family member 3, CHLORIDE ION, GLYCEROL, ...
著者Xu, E.-R, Hyvonen, M.
登録日2019-04-29
公開日2019-10-02
最終更新日2020-02-19
実験手法X-RAY DIFFRACTION (1.63 Å)
主引用文献The thrombospondin module 1 domain of the matricellular protein CCN3 shows an atypical disulfide pattern and incomplete CWR layers.
Acta Crystallogr D Struct Biol, 76, 2020
7KTX
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BU of 7ktx by Molmil
Cryo-EM structure of Saccharomyces cerevisiae ER membrane protein complex bound to a Fab in DDM detergent
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ER membrane protein complex subunit 1, ER membrane protein complex subunit 2, ...
著者Miller-Vedam, L.E, Schirle Oakdale, N.S, Braeuning, B, Boydston, E.A, Sevillano, N, Popova, K.D, Bonnar, J.L, Shurtleff, M.J, Prabu, J.R, Stroud, R.M, Craik, C.S, Schulman, B.A, Weissman, J.S, Frost, A.
登録日2020-11-24
公開日2020-12-02
最終更新日2020-12-09
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Structural and mechanistic basis of the EMC-dependent biogenesis of distinct transmembrane clients.
Elife, 9, 2020
8I40
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BU of 8i40 by Molmil
Crystal structure of ASCT from Trypanosoma brucei in complex with CoA.
分子名称: ACETATE ION, CALCIUM ION, COENZYME A, ...
著者Mochizuki, K, Inaoka, D.K, Fukuda, K, Kurasawa, H, Iyoda, K, Nakai, U, Harada, S, Balogun, E.O, Mazet, M, Millerioux, Y, Bringaud, F, Boshart, M, Hirayama, K, Kita, K, Shiba, T.
登録日2023-01-18
公開日2024-01-31
実験手法X-RAY DIFFRACTION (2.79 Å)
主引用文献Crystal structure of ligand complexes of ASCT from Trypanosoma brucei and molecular mechanism in comparison with mammalian SCOT.
To Be Published
1FC0
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BU of 1fc0 by Molmil
HUMAN LIVER GLYCOGEN PHOSPHORYLASE COMPLEXED WITH N-ACETYL-BETA-D-GLUCOPYRANOSYLAMINE
分子名称: GLYCOGEN PHOSPHORYLASE, LIVER FORM, N-acetyl-beta-D-glucopyranosylamine, ...
著者Rath, V.L, Ammirati, M, LeMotte, P.K, Fennell, K.F, Mansour, M.M, Danley, D.E, Hynes, T.R, Schulte, G.K, Wasilko, D.J, Pandit, J.
登録日2000-07-17
公開日2000-08-25
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Activation of human liver glycogen phosphorylase by alteration of the secondary structure and packing of the catalytic core.
Mol.Cell, 6, 2000
1FIP
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THE STRUCTURE OF FIS MUTANT PRO61ALA ILLUSTRATES THAT THE KINK WITHIN THE LONG ALPHA-HELIX IS NOT DUE TO THE PRESENCE OF THE PROLINE RESIDUE
分子名称: FACTOR FOR INVERSION STIMULATION (FIS), UNKNOWN PEPTIDE, POSSIBLY PART OF THE UNOBSERVED RESIDUES IN ENTITY 1
著者Yuan, H.S, Wang, S.S, Yang, W.-Z, Finkel, S.E, Johnson, R.C.
登録日1994-09-26
公開日1995-02-14
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The structure of Fis mutant Pro61Ala illustrates that the kink within the long alpha-helix is not due to the presence of the proline residue.
J.Biol.Chem., 269, 1994
1FJO
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THERMOLYSIN (60% ACETONE SOAKED CRYSTALS)
分子名称: ACETONE, CALCIUM ION, DIMETHYL SULFOXIDE, ...
著者English, A.C, Groom, C.R, Hubbard, R.E.
登録日2000-08-08
公開日2001-04-18
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Experimental and computational mapping of the binding surface of a crystalline protein.
Protein Eng., 14, 2001
5MBC
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BU of 5mbc by Molmil
Structure of a bacterial light-regulated adenylyl cylcase
分子名称: Beta subunit of photoactivated adenylyl cyclase, CHLORIDE ION, FLAVIN MONONUCLEOTIDE
著者Lindner, R, Hartmann, E, Tarnawski, M, Winkler, A, Frey, D, Reinstein, J, Meinhart, A, Schlichting, I.
登録日2016-11-08
公開日2017-04-05
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Photoactivation Mechanism of a Bacterial Light-Regulated Adenylyl Cyclase.
J. Mol. Biol., 429, 2017
1FML
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CRYSTAL STRUCTURE OF RETINOL DEHYDRATASE IN A COMPLEX WITH RETINOL AND PAP
分子名称: ADENOSINE-3'-5'-DIPHOSPHATE, CALCIUM ION, RETINOL, ...
著者Pakhomova, S, Kobayashi, M, Buck, J, Newcomer, M.E.
登録日2000-08-17
公開日2001-05-02
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献A helical lid converts a sulfotransferase to a dehydratase.
Nat.Struct.Biol., 8, 2001
1FJV
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THERMOLYSIN (60% ACETONITRILE SOAKED CRYSTALS)
分子名称: CALCIUM ION, DIMETHYL SULFOXIDE, THERMOLYSIN, ...
著者English, A.C, Groom, C.R, Hubbard, R.E.
登録日2000-08-08
公開日2001-04-18
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Experimental and computational mapping of the binding surface of a crystalline protein.
Protein Eng., 14, 2001
8QBC
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Reactive amide intermediate in sperm whale myoglobin mutant H64V V68A
分子名称: ACETATE ION, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Tinzl, M, Mittl, P.R.E, Hilvert, D.
登録日2023-08-24
公開日2023-12-13
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.23 Å)
主引用文献Myoglobin-Catalyzed Azide Reduction Proceeds via an Anionic Metal Amide Intermediate.
J.Am.Chem.Soc., 146, 2024
5UB9
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Catalytic core domain of Adenosine triphosphate phosphoribosyltransferase from Campylobacter jejuni
分子名称: ACETATE ION, ATP phosphoribosyltransferase, CHLORIDE ION, ...
著者Mittelstaedt, G, Jiao, W, Livingstone, E.K, Parker, E.J.
登録日2016-12-20
公開日2017-12-20
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A dimeric catalytic core relates the short and long forms of ATP-phosphoribosyltransferase.
Biochem. J., 475, 2018
8PK0
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human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7
分子名称: 16S rRNA + pre-H68-71 segment, 39S ribosomal protein L10, mitochondrial, ...
著者Kummer, E, Nguyen, T.G, Ritter, C.
登録日2023-06-23
公開日2023-12-13
最終更新日2024-06-26
実験手法ELECTRON MICROSCOPY (3.03 Å)
主引用文献Structural insights into the role of GTPBP10 in the RNA maturation of the mitoribosome.
Nat Commun, 14, 2023
1J9L
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CRYSTAL STRUCTURE OF SURE PROTEIN FROM T.MARITIMA IN COMPLEX WITH VANADATE
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, STATIONARY PHASE SURVIVAL PROTEIN, ...
著者Suh, S.W, Lee, J.Y, Kwak, J.E, Moon, J.
登録日2001-05-28
公開日2001-09-12
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure and functional analysis of the SurE protein identify a novel phosphatase family.
Nat.Struct.Biol., 8, 2001
8QBA
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Sperm whale myoblogin mutant H64V V68A in complex with glycine ethyl ester
分子名称: ACETATE ION, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Tinzl, M, Mittl, P.R.E, Hilvert, D.
登録日2023-08-24
公開日2023-12-13
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.39 Å)
主引用文献Myoglobin-Catalyzed Azide Reduction Proceeds via an Anionic Metal Amide Intermediate.
J.Am.Chem.Soc., 146, 2024
2NOD
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MURINE INDUCIBLE NITRIC OXIDE SYNTHASE OXYGENASE DIMER (DELTA 65) WITH TETRAHYDROBIOPTERIN AND WATER BOUND IN ACTIVE CENTER
分子名称: 5,6,7,8-TETRAHYDROBIOPTERIN, NITRIC OXIDE SYNTHASE, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Crane, B.R, Arvai, A.S, Getzoff, E.D, Stuehr, D.J, Tainer, J.A.
登録日1998-03-05
公開日1999-03-23
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure of nitric oxide synthase oxygenase dimer with pterin and substrate.
Science, 279, 1998
5MI6
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BtGH84 mutant with covalent modification by MA3 in complex with Thiamet G
分子名称: (3AR,5R,6S,7R,7AR)-2-(ETHYLAMINO)-5-(HYDROXYMETHYL)-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D][1,3]THIAZOLE-6,7-DIOL, 1,2-ETHANEDIOL, CALCIUM ION, ...
著者Darby, J.F, Davies, G.J, Hubbard, R.E.
登録日2016-11-27
公開日2017-11-01
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Increase of enzyme activity through specific covalent modification with fragments.
Chem Sci, 8, 2017

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