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3PBJ
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BU of 3pbj by Molmil
Hydrolytic catalysis and structural stabilization in a designed metalloprotein
分子名称: CHLORIDE ION, COIL SER L9L-Pen L23H, MERCURY (II) ION, ...
著者Zastrow, M.L, Peacock, A.F.A, Stuckey, J.A, Pecoraro, V.L.
登録日2010-10-20
公開日2011-11-30
最終更新日2022-05-04
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Hydrolytic catalysis and structural stabilization in a designed metalloprotein.
Nat Chem, 4, 2012
3U0S
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BU of 3u0s by Molmil
Crystal Structure of an Enzyme Redesigned Through Multiplayer Online Gaming: CE6
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Diisopropyl-fluorophosphatase, GLYCEROL, ...
著者Bale, J.B, Shen, B.W, Stoddard, B.L.
登録日2011-09-29
公開日2012-02-01
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Increased Diels-Alderase activity through backbone remodeling guided by Foldit players.
Nat.Biotechnol., 30, 2012
3TWG
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BU of 3twg by Molmil
Crystal structure of the de novo designed fluorinated peptide alpha4F3af3d
分子名称: alpha4F3af3d
著者Buer, B.C, Meagher, J.L, Stuckey, J.A, Marsh, E.N.G.
登録日2011-09-21
公開日2012-03-14
最終更新日2017-11-08
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Structural basis for the enhanced stability of highly fluorinated proteins.
Proc.Natl.Acad.Sci.USA, 109, 2012
3TWF
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BU of 3twf by Molmil
Crystal structure of the de novo designed fluorinated peptide alpha4F3a
分子名称: ACETYL GROUP, SODIUM ION, TRIETHYLENE GLYCOL, ...
著者Buer, B.C, Meagher, J.L, Stuckey, J.A, Marsh, E.N.G.
登録日2011-09-21
公開日2012-03-14
最終更新日2017-11-08
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Structural basis for the enhanced stability of highly fluorinated proteins.
Proc.Natl.Acad.Sci.USA, 109, 2012
6REN
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BU of 6ren by Molmil
Crystal structure of 3fPizza6-SH with Zn2+
分子名称: 3fPizza6-SH, GLYCEROL, ISOPROPYL ALCOHOL, ...
著者Noguchi, H, Clarke, D.E, Gryspeerdt, J.L, Feyter, S.D, Voet, A.R.D.
登録日2019-04-12
公開日2019-07-31
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Artificial beta-propeller protein-based hydrolases.
Chem.Commun.(Camb.), 55, 2019
6REH
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BU of 6reh by Molmil
Crystal structure of Pizza6-S with Cu2+
分子名称: COPPER (II) ION, GLYCEROL, Pizza6-S, ...
著者Noguchi, H, Clarke, D.E, Gryspeerdt, J.L, Feyter, S.D, Voet, A.R.D.
登録日2019-04-12
公開日2019-07-31
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Artificial beta-propeller protein-based hydrolases.
Chem.Commun.(Camb.), 55, 2019
6REJ
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BU of 6rej by Molmil
Crystal structure of Pizza6-SH with Zn2+
分子名称: Pizza6-SH, SULFATE ION, ZINC ION
著者Noguchi, H, Clarke, D.E, Gryspeerdt, J.L, Feyter, S.D, Voet, A.R.D.
登録日2019-04-12
公開日2019-07-31
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Artificial beta-propeller protein-based hydrolases.
Chem.Commun.(Camb.), 55, 2019
5MKE
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BU of 5mke by Molmil
cryoEM Structure of Polycystin-2 in complex with cations and lipids
分子名称: 1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Wilkes, M, Madej, M.G, Ziegler, C.
登録日2016-12-04
公開日2017-01-18
最終更新日2020-07-29
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Molecular insights into lipid-assisted Ca(2+) regulation of the TRP channel Polycystin-2.
Nat. Struct. Mol. Biol., 24, 2017
5MKF
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BU of 5mkf by Molmil
cryoEM Structure of Polycystin-2 in complex with calcium and lipids
分子名称: 1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Wilkes, M, Madej, M.G, Ziegler, C.
登録日2016-12-04
公開日2017-01-18
最終更新日2020-07-29
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Molecular insights into lipid-assisted Ca(2+) regulation of the TRP channel Polycystin-2.
Nat. Struct. Mol. Biol., 24, 2017
6REG
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BU of 6reg by Molmil
Crystal structure of Pizza6-S with Zn2+
分子名称: GLYCEROL, Pizza6-S, ZINC ION
著者Noguchi, H, Clarke, D.E, Gryspeerdt, J.L, Feyter, S.D, Voet, A.R.D.
登録日2019-04-12
公開日2019-07-31
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Artificial beta-propeller protein-based hydrolases.
Chem.Commun.(Camb.), 55, 2019
6REK
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BU of 6rek by Molmil
Crystal structure of Pizza6-SH with Cu2+
分子名称: COPPER (II) ION, GLYCEROL, Pizza6-SH
著者Noguchi, H, Clarke, D.E, Gryspeerdt, J.L, Feyter, S.D, Voet, A.R.D.
登録日2019-04-12
公開日2019-07-31
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Artificial beta-propeller protein-based hydrolases.
Chem.Commun.(Camb.), 55, 2019
1E7Q
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BU of 1e7q by Molmil
GDP 4-keto-6-deoxy-D-mannose epimerase reductase S107A
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETYLPHOSPHATE, GDP-FUCOSE SYNTHETASE, ...
著者Rosano, C, Izzo, G, Bolognesi, M.
登録日2000-09-07
公開日2000-10-18
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Probing the Catalytic Mechanism of Gdp-4-Keto-6-Deoxy-D-Mannose Epimerase/Reductase by Kinetic and Crystallographic Characterization of Site-Specific Mutants
J.Mol.Biol., 303, 2000
1E6U
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BU of 1e6u by Molmil
GDP 4-keto-6-deoxy-D-mannose epimerase reductase
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETYLPHOSPHATE, GDP-FUCOSE SYNTHETASE, ...
著者Rosano, C, Izzo, G, Bolognesi, M.
登録日2000-08-23
公開日2000-10-22
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Probing the Catalytic Mechanism of Gdp-4-Keto-6-Deoxy-D-Mannose Epimerase/Reductase by Kinetic and Crystallographic Characterization of Site-Specific Mutants
J.Mol.Biol., 303, 2000
1E7S
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BU of 1e7s by Molmil
GDP 4-keto-6-deoxy-D-mannose epimerase reductase K140R
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETYLPHOSPHATE, GDP-FUCOSE SYNTHETASE, ...
著者Rosano, C, Zuccotti, S, Izzo, G, Bolognesi, M.
登録日2000-09-07
公開日2000-10-18
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Probing the Catalytic Mechanism of Gdp-4-Keto-6-Deoxy-D-Mannose Epimerase/Reductase by Kinetic and Crystallographic Characterization of Site-Specific Mutants
J.Mol.Biol., 303, 2000
1E7R
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BU of 1e7r by Molmil
GDP 4-keto-6-deoxy-D-mannose epimerase reductase Y136E
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETYLPHOSPHATE, GDP-FUCOSE SYNTHETASE, ...
著者Rosano, C, Izzo, G, Bolognesi, M.
登録日2000-09-07
公開日2000-10-18
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Probing the Catalytic Mechanism of Gdp-4-Keto-6-Deoxy-D-Mannose Epimerase/Reductase by Kinetic and Crystallographic Characterization of Site-Specific Mutants
J.Mol.Biol., 303, 2000
5KAF
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BU of 5kaf by Molmil
RT XFEL structure of Photosystem II in the dark state at 3.0 A resolution
分子名称: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
著者Young, I.D, Ibrahim, M, Chatterjee, R, Gul, S, Koroidov, S, Brewster, A.S, Tran, R, Alonso-Mori, R, Fuller, F, Kroll, T, Michels-Clark, T, Laksmono, H, Sierra, R.G, Stan, C.A, Saracini, C, Bean, M.A, Seuffert, I, Sokaras, D, Weng, T.-C, Hunter, M.S, Aquila, A, Koglin, J.E, Robinson, J, Liang, M, Boutet, S, Lyubimov, A.Y, Uervirojnangkoorn, M, Moriarty, N.W, Liebschner, D, Afonine, P.V, Waterman, D.G, Evans, G, Dobbek, H, Weis, W.I, Brunger, A.T, Zwart, P.H, Adams, P.D, Zouni, A, Messinger, J, Bergmann, U, Sauter, N.K, Kern, J, Yachandra, V.K, Yano, J.
登録日2016-06-01
公開日2016-11-23
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.00001 Å)
主引用文献Structure of photosystem II and substrate binding at room temperature.
Nature, 540, 2016
5KAI
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BU of 5kai by Molmil
NH3-bound RT XFEL structure of Photosystem II 500 ms after the 2nd illumination (2F) at 2.8 A resolution
分子名称: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ...
著者Young, I.D, Ibrahim, M, Chatterjee, R, Gul, S, Koroidov, S, Brewster, A.S, Tran, R, Alonso-Mori, R, Fuller, F, Kroll, T, Michels-Clark, T, Laksmono, H, Sierra, R.G, Stan, C.A, Saracini, C, Bean, M.A, Seuffert, I, Sokaras, D, Weng, T.-C, Hunter, M.S, Aquila, A, Koglin, J.E, Robinson, J, Liang, M, Boutet, S, Lyubimov, A.Y, Uervirojnangkoorn, M, Moriarty, N.W, Liebschner, D, Afonine, P.V, Waterman, D.G, Evans, G, Dobbek, H, Weis, W.I, Brunger, A.T, Zwart, P.H, Adams, P.D, Zouni, A, Messinger, J, Bergmann, U, Sauter, N.K, Kern, J, Yachandra, V.K, Yano, J.
登録日2016-06-01
公開日2016-11-23
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.80000925 Å)
主引用文献Structure of photosystem II and substrate binding at room temperature.
Nature, 540, 2016
2JOF
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BU of 2jof by Molmil
The Trp-cage: Optimizing the Stability of a Globular Miniprotein
分子名称: TRP-CAGE
著者Barua, B, Andersen, N.H.
登録日2007-03-09
公開日2008-03-04
最終更新日2024-05-08
実験手法SOLUTION NMR
主引用文献The Trp-cage: optimizing the stability of a globular miniprotein
Protein Eng.Des.Sel., 21, 2008
2N35
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BU of 2n35 by Molmil
Fusion to a Highly Stable Consensus Albumin Binding Domain Allows for Tunable Pharmacokinetics
分子名称: Albumin binding protein
著者Gibbs, A.C, Jacobs, S.A.
登録日2015-05-21
公開日2015-09-02
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Fusion to a highly stable consensus albumin binding domain allows for tunable pharmacokinetics.
Protein Eng.Des.Sel., 28, 2015
2N8D
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BU of 2n8d by Molmil
In silico designed antimicrobial peptide Lavracin
分子名称: antimicrobial peptide Lavracin
著者Pillong, M, Blatter, M, Schneider, G.
登録日2015-10-13
公開日2017-01-18
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献Rational Design of Membrane-Pore-Forming Peptides.
Small, 13, 2017
7B1X
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BU of 7b1x by Molmil
Crystal structure of cold-active esterase PMGL3 from permafrost metagenomic library
分子名称: esterase PMGL3
著者Boyko, K.M, Nikolaeva, A.Y, Petrovskaya, L.E, Kryukova, M.V, Kryukova, E.A, Korzhenevsky, D.A, Lomakina, G.Y, Novototskaya-Vlasova, K.A, Rivkina, E.M, Dolgikh, D.A, Kirpichnikov, M.P, Popov, V.O.
登録日2020-11-25
公開日2021-11-03
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural and Biochemical Characterization of a Cold-Active PMGL3 Esterase with Unusual Oligomeric Structure.
Biomolecules, 11, 2021
7L85
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BU of 7l85 by Molmil
Designed tetrahedral nanoparticle T33-31 presenting BG505 SOSIP trimers
分子名称: BG505 SOSIP-T33-31A, BG505 SOSIP-T33-31B
著者Antanasijevic, A, Sewall, L.M, Ward, A.B.
登録日2020-12-31
公開日2021-08-04
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Polyclonal antibody responses to HIV Env immunogens resolved using cryoEM.
Nat Commun, 12, 2021
1P9B
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BU of 1p9b by Molmil
Structure of fully ligated Adenylosuccinate synthetase from Plasmodium falciparum
分子名称: 6-O-PHOSPHORYL INOSINE MONOPHOSPHATE, Adenylosuccinate Synthetase, GUANOSINE-5'-DIPHOSPHATE, ...
著者Eaazhisai, K, Jayalakshmi, R, Gayathri, P, Anand, R.P, Sumathy, K, Balaram, H, Murthy, M.R.
登録日2003-05-10
公開日2004-02-03
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of Fully Ligated Adenylosuccinate Synthetase from Plasmodium falciparum.
J.Mol.Biol., 335, 2004
3PFD
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BU of 3pfd by Molmil
Crystal structure of an Acyl-CoA dehydrogenase from Mycobacterium thermoresistibile bound to reduced flavin adenine dinucleotide solved by combined iodide ion SAD MR
分子名称: Acyl-CoA dehydrogenase, DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, IODIDE ION
著者Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2010-10-28
公開日2010-11-10
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献SAD phasing using iodide ions in a high-throughput structural genomics environment.
J.STRUCT.FUNCT.GENOM., 12, 2011
4N6U
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BU of 4n6u by Molmil
Adhiron: a stable and versatile peptide display scaffold - truncated adhiron
分子名称: Adhiron
著者Mcpherson, M, Tomlinson, D, Owen, R.L, Nettleship, J.E, Owens, R.J.
登録日2013-10-14
公開日2014-04-09
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.251 Å)
主引用文献Adhiron: a stable and versatile peptide display scaffold for molecular recognition applications.
Protein Eng.Des.Sel., 27, 2014

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