PDB: 302 件ウェブページステータス検索Chemie searchBIRD

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5VU7	TNA polymerase, open ternary complex 分子名称: 5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXYTETRAHYDROFURAN-3-YL DIHYDROGEN PHOSPHATE, DNA polymerase, DNA template, ... 著者 Chim, N, Chaput, J.C. 登録日 2017-05-18 公開日 2017-12-06 最終更新日 2017-12-13 実験手法 X-RAY DIFFRACTION (2.72 Å) 主引用文献 Structural basis for TNA synthesis by an engineered TNA polymerase. Nat Commun, 8, 2017
5VU6	TNA polymerase binary complex with primer/template duplex 分子名称: DNA polymerase, DNA template, DNA/TNA hybrid primer 著者 Chim, N, Chaput, J.C. 登録日 2017-05-18 公開日 2017-12-06 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural basis for TNA synthesis by an engineered TNA polymerase. Nat Commun, 8, 2017
5VU5	TNA polymerase, apo 分子名称: DNA polymerase 著者 Chim, N, Chaput, J.C. 登録日 2017-05-18 公開日 2017-12-06 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural basis for TNA synthesis by an engineered TNA polymerase. Nat Commun, 8, 2017
5OMV	Ternary complex of 9N DNA polymerase in the replicative state with two metal ions in the active site 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA polymerase, DNA primer, ... 著者 Betz, K, Marx, A, Diederichs, K. 登録日 2017-08-01 公開日 2017-12-20 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.003 Å) 主引用文献 Crystal structures of ternary complexes of archaeal B-family DNA polymerases. PLoS ONE, 12, 2017
5OMQ	Ternary complex of 9N DNA polymerase in the replicative state with three metal ions in the active site 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA Primer, DNA Template, ... 著者 Betz, K, Marx, A, Diederichs, K. 登録日 2017-08-01 公開日 2017-12-20 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.199 Å) 主引用文献 Crystal structures of ternary complexes of archaeal B-family DNA polymerases. PLoS ONE, 12, 2017
5OMF	Closed, ternary structure of KOD DNA polymerase 分子名称: 1,2-ETHANEDIOL, 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*CP*AP*C)-3'), ... 著者 Kropp, H.M, Betz, K, Wirth, J, Diederichs, K, Marx, A. 登録日 2017-07-31 公開日 2017-12-20 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.092 Å) 主引用文献 Crystal structures of ternary complexes of archaeal B-family DNA polymerases. PLoS ONE, 12, 2017
5N2H	Structure of the E9 DNA polymerase exonuclease deficient mutant (D166A+E168A) from vaccinia virus 分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ... 著者 Tarbouriech, N, Burmeister, W.P, Iseni, F. 登録日 2017-02-07 公開日 2017-11-29 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.81 Å) 主引用文献 The vaccinia virus DNA polymerase structure provides insights into the mode of processivity factor binding. Nat Commun, 8, 2017
5N2G	Structure of the E9 DNA polymerase from vaccinia virus in complex with manganese 分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ... 著者 Tarbouriech, N, Burmeister, W.P, Iseni, F. 登録日 2017-02-07 公開日 2017-11-29 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.78 Å) 主引用文献 The vaccinia virus DNA polymerase structure provides insights into the mode of processivity factor binding. Nat Commun, 8, 2017
5N2E	Structure of the E9 DNA polymerase from vaccinia virus 分子名称: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ... 著者 Tarbouriech, N, Burmeister, W.P, Iseni, F. 登録日 2017-02-07 公開日 2017-11-29 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.74 Å) 主引用文献 The vaccinia virus DNA polymerase structure provides insights into the mode of processivity factor binding. Nat Commun, 8, 2017
5MDN	Structure of the family B DNA polymerase from the hyperthermophilic archaeon Pyrobaculum calidifontis 分子名称: DNA polymerase, MAGNESIUM ION 著者 Guo, J, Zhang, W, Coker, A.R, Wood, S.P, Cooper, J.B, Rashid, N, Akhtar, M. 登録日 2016-11-12 公開日 2016-12-14 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structure of the family B DNA polymerase from the hyperthermophilic archaeon Pyrobaculum calidifontis. Acta Crystallogr D Struct Biol, 73, 2017
5IUD	Human DNA polymerase alpha in binary complex with a DNA:DNA template-primer 分子名称: DNA polymerase alpha catalytic subunit, DNA primer, DNA template 著者 Coloma, J, Aggarwal, A.K. 登録日 2016-03-17 公開日 2016-04-13 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Human DNA polymerase alpha in binary complex with a DNA:DNA template-primer. Sci Rep, 6, 2016
5H12	Crystal structure of Deep Vent DNA Polymerase 分子名称: Deep Vent DNA Polymerase 著者 Hikida, Y, Kimoto, M, Hirao, I, Yokoyama, S. 登録日 2016-10-07 公開日 2017-01-25 最終更新日 2017-08-30 実験手法 X-RAY DIFFRACTION (2.502 Å) 主引用文献 Crystal structure of Deep Vent DNA polymerase. Biochem. Biophys. Res. Commun., 483, 2017
5EXR	Crystal structure of human primosome 分子名称: DNA polymerase alpha catalytic subunit, DNA polymerase alpha subunit B, DNA primase large subunit, ... 著者 Tahirov, T.H, Baranovskiy, A.G, Babayeva, N.D. 登録日 2015-11-24 公開日 2016-03-23 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 Mechanism of Concerted RNA-DNA Primer Synthesis by the Human Primosome. J.Biol.Chem., 291, 2016
4QCL	Crystal structure of the catalytic core of human DNA polymerase alpha in ternary complex with an RNA-primed DNA template and dCTP 分子名称: 1,2-ETHANEDIOL, 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA TEMPLATE, ... 著者 Baranovskiy, A.G, Suwa, Y, Babayeva, N.D, Gu, J, Tahirov, T.H. 登録日 2014-05-12 公開日 2014-11-26 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Activity and fidelity of human DNA polymerase alpha depend on primer structure J.Biol.Chem., 2018
4Q5V	Crystal structure of the catalytic core of human DNA polymerase alpha in ternary complex with an RNA-primed DNA template and aphidicolin 分子名称: (3R,4R,4aR,6aS,8R,9R,11aS,11bS)-4,9-bis(hydroxymethyl)-4,11b-dimethyltetradecahydro-8,11a-methanocyclohepta[a]naphthale ne-3,9-diol, DNA polymerase alpha catalytic subunit, DNA template, ... 著者 Baranovskiy, A.G, Babayeva, N.D, Suwa, Y, Gu, J, Tahirov, T.H. 登録日 2014-04-17 公開日 2014-11-26 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.52 Å) 主引用文献 Structural basis for inhibition of DNA replication by aphidicolin. Nucleic Acids Res., 42, 2014
4PTF	Ternary crystal structure of yeast DNA polymerase epsilon with template G 分子名称: 1,2-ETHANEDIOL, 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 5'-D(*AP*TP*CP*CP*TP*CP*CP*CP*CP*TP*AP*(DOC))-3', ... 著者 Jain, R, Rajashankar, K.R, Buku, A, Johnson, R.E, Prakash, L, Prakash, S, Aggarwal, A.K. 登録日 2014-03-10 公開日 2014-04-30 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.809 Å) 主引用文献 Crystal Structure of Yeast DNA Polymerase epsilon Catalytic Domain. Plos One, 9, 2014
4M8O	TERNARY COMPLEX OF DNA POLYMERASE EPSILON WITH AN INCOMING dATP 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 2-AMINOETHANESULFONIC ACID, CHLORIDE ION, ... 著者 Sauer-Eriksson, A.E, Hogg, M, Osterman, P, Johansson, E. 登録日 2013-08-13 公開日 2013-11-27 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural basis for processive DNA synthesis by yeast DNA polymerase epsilon. Nat.Struct.Mol.Biol., 21, 2014
4M45	RB69 DNA polymerase ternary complex with dG/dT at position n-5 of primer/template duplex 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... 著者 Xia, S, Konigsberg, W.H. 登録日 2013-08-06 公開日 2014-02-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.89 Å) 主引用文献 Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant. Protein Sci., 23, 2014
4M42	RB69 DNA polymerase ternary complex with dG/dT at position n-4 of primer/tempLate duplex 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... 著者 Xia, S, Konigsberg, W.H. 登録日 2013-08-06 公開日 2014-02-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant. Protein Sci., 23, 2014
4M41	RB69 DNA polymerase ternary complex with dG/dT at position n-3 of primer/tempLate duplex 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... 著者 Xia, S, Konigsberg, W.H. 登録日 2013-08-06 公開日 2014-02-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant. Protein Sci., 23, 2014
4M3Z	RB69 DNA polymerase ternary complex with dG/dT at position n-2 of primer/tempLate duplex 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... 著者 Xia, S, Konigsberg, W.H. 登録日 2013-08-06 公開日 2014-02-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.84 Å) 主引用文献 Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant. Protein Sci., 23, 2014
4M3Y	RB69 DNA polymerase ternary complex with dG/dT at position n-1 of primer/template duplex 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... 著者 Xia, S, Konigsberg, W.H. 登録日 2013-08-06 公開日 2014-02-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant. Protein Sci., 23, 2014
4M3X	RB69 DNA polymerase ternary complex with dT/dG at position n-5 of primer/template duplex 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... 著者 Xia, S, Konigsberg, W.H. 登録日 2013-08-06 公開日 2014-02-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant. Protein Sci., 23, 2014
4M3W	RB69 DNA polymerase ternary complex with dT/dG at position n-4 of primer/template duplex 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... 著者 Xia, S, Konigsberg, W.H. 登録日 2013-08-06 公開日 2014-02-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant. Protein Sci., 23, 2014
4M3U	RB69 DNA polymerase ternary complex with dT/dG at position n-3 of primer/template duplex 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase, ... 著者 Xia, S, Konigsberg, W.H. 登録日 2013-08-06 公開日 2014-02-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.07 Å) 主引用文献 Mispairs with Watson-Crick base-pair geometry observed in ternary complexes of an RB69 DNA polymerase variant. Protein Sci., 23, 2014

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