PDB: 183105 件ウェブページステータス検索Chemie searchBIRD

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4DUW	E. coli (lacZ) beta-galactosidase (G974A) in complex with allolactose 分子名称: Beta-galactosidase, DIMETHYL SULFOXIDE, MAGNESIUM ION, ... 著者 Wheatley, R.W, Lo, S, Janzcewicz, L.J, Dugdale, M.L, Huber, R.E. 登録日 2012-02-22 公開日 2013-03-20 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural Explanation for Allolactose (lac operon inducer) Synthesis by lacZ beta-Galactosidase and the Evolutionary Relationship between Allolactose synthesis and the lac Repressor J.Biol.Chem., 288, 2013
4MUY	IspH in complex with pyridin-4-ylmethyl diphosphate 分子名称: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, FE3-S4 CLUSTER, pyridin-4-ylmethyl trihydrogen diphosphate 著者 Span, I, Wang, K, Song, Y, Eisenreich, W, Bacher, A, Oldfield, E, Groll, M. 登録日 2013-09-23 公開日 2014-06-11 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Insights into the Binding of Pyridines to the Iron-Sulfur Enzyme IspH. J.Am.Chem.Soc., 136, 2014
1UAA	E. COLI REP HELICASE/DNA COMPLEX 分子名称: DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), PROTEIN (ATP-DEPENDENT DNA HELICASE REP.) 著者 Korolev, S, Waksman, G. 登録日 1997-06-30 公開日 1998-07-09 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Major domain swiveling revealed by the crystal structures of complexes of E. coli Rep helicase bound to single-stranded DNA and ADP. Cell(Cambridge,Mass.), 90, 1997
4E7D	E. cloacae MurA in complex with UDP 分子名称: 1,2-ETHANEDIOL, ACETATE ION, UDP-N-acetylglucosamine 1-carboxyvinyltransferase, ... 著者 Zhu, J.-Y, Yang, Y, Schonbrunn, E. 登録日 2012-03-16 公開日 2013-03-20 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Open-close transition of MurA To be Published
4E7G	E. cloacae C115D/R120A MurA in the unliganded state 分子名称: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ... 著者 Zhu, J.-Y, Yang, Y, Schonbrunn, E. 登録日 2012-03-16 公開日 2013-03-20 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Open-close transition of MurA To be Published
4DUX	E. coli (lacZ) beta-galactosidase (N460S) in complex with L-ribose 分子名称: Beta-galactosidase, DIMETHYL SULFOXIDE, MAGNESIUM ION, ... 著者 Wheatley, R.W, Lo, S, Janzcewicz, L.J, Dugdale, M.L, Huber, R.E. 登録日 2012-02-22 公開日 2013-03-20 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural explanation for allolactose (lac operon inducer) synthesis by lacZ beta-galactosidase and the evolutionary relationship between allolactose synthesis and the lac repressor. J.Biol.Chem., 288, 2013
4BCW	Carbonic anhydrase IX mimic in complex with (E)-2-(5-bromo-2- hydroxyphenyl)ethenesulfonic acid 分子名称: (E)-2-(5-BROMO-2-HYDROXYPHENYL)ETHENESULFONIC ACID, CARBONIC ANHYDRASE 2, ZINC ION 著者 Tars, K, Leitans, J, Kazaks, A. 登録日 2012-10-03 公開日 2013-02-06 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Sulfocoumarins (1,2-Benzoxathiine-2,2-Dioxides): A Class of Potent and Isoform-Selective Inhibitors of Tumor-Associated Carbonic Anhydrases. J.Med.Chem., 56, 2013
4E7F	E. cloacae C115D MurA in complex with UDP 分子名称: 1,2-ETHANEDIOL, ACETATE ION, UDP-N-acetylglucosamine 1-carboxyvinyltransferase, ... 著者 Zhu, J.-Y, Betzi, S, Yang, Y, Schonbrunn, E. 登録日 2012-03-16 公開日 2013-03-20 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Open-close transition of MurA To be Published
4E7B	E. cloacae MurA in complex with UDP-glucose 分子名称: 1,2-ETHANEDIOL, ACETATE ION, UDP-N-acetylglucosamine 1-carboxyvinyltransferase, ... 著者 Zhu, J.-Y, Yang, Y, Schonbrunn, E. 登録日 2012-03-16 公開日 2013-03-20 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Open-close transition of MurA To be Published
4MUX	IspH in complex with pyridin-3-ylmethyl diphosphate 分子名称: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, IRON/SULFUR CLUSTER, pyridin-3-ylmethyl trihydrogen diphosphate 著者 Span, I, Eisenreich, W, Bacher, A, Oldfield, E, Groll, M. 登録日 2013-09-23 公開日 2014-06-18 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Insights into the Binding of Pyridines to the Iron-Sulfur Enzyme IspH. J.Am.Chem.Soc., 136, 2014
4E7E	E. cloacae C115D MurA in complex with UDP-glucose 分子名称: 1,2-ETHANEDIOL, ACETATE ION, UDP-N-acetylglucosamine 1-carboxyvinyltransferase, ... 著者 Zhu, J.-Y, Yang, Y, Schonbrunn, E. 登録日 2012-03-16 公開日 2013-03-20 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Open-close transition of MurA To be Published
4MV5	IspH in complex with 6-chloropyridin-3-ylmethyl diphosphate 分子名称: (6-chloropyridin-3-yl)methyl trihydrogen diphosphate, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, FE3-S4 CLUSTER 著者 Span, I, Wang, K, Song, Y, Eisenreich, W, Bacher, A, Oldfield, E, Groll, M. 登録日 2013-09-23 公開日 2014-06-18 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Insights into the Binding of Pyridines to the Iron-Sulfur Enzyme IspH. J.Am.Chem.Soc., 136, 2014
4E7C	E. cloacae MurA in complex with UTP 分子名称: 1,2-ETHANEDIOL, ACETATE ION, UDP-N-acetylglucosamine 1-carboxyvinyltransferase, ... 著者 Zhu, J.-Y, Yang, Y, Schonbrunn, E. 登録日 2012-03-16 公開日 2013-03-20 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Open-close transition of MurA To be Published
4MV0	IspH in complex with pyridin-2-ylmethyl diphosphate 分子名称: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, FE3-S4 CLUSTER, pyridin-2-ylmethyl trihydrogen diphosphate 著者 Span, I, Wang, K, Song, Y, Eisenreich, W, Bacher, A, Oldfield, E, Groll, M. 登録日 2013-09-23 公開日 2014-06-11 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Insights into the Binding of Pyridines to the Iron-Sulfur Enzyme IspH. J.Am.Chem.Soc., 136, 2014
5RA4	PanDDA analysis group deposition Form1 MAP kinase p38-alpha -- Fragment N11337a in complex with MAP kinase p38-alpha 分子名称: (~{E})-1-(4-chlorophenyl)-~{N}-(pyridin-3-ylmethyl)ethanimine, CHLORIDE ION, DIMETHYL SULFOXIDE, ... 著者 De Nicola, G.F, Nichols, C.E. 登録日 2020-03-04 公開日 2020-07-22 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.59 Å) 主引用文献 Mining the PDB for Tractable Cases Where X-ray Crystallography Combined with Fragment Screens Can Be Used to Systematically Design Protein-Protein Inhibitors: Two Test Cases Illustrated by IL1 beta-IL1R and p38 alpha-TAB1 Complexes. J.Med.Chem., 63, 2020
3A80	Crystal Structure of Trypsin complexed with (E)-2-(4-carbamimidoylbenzylideneaminooxy)-2-methylpropanoic acid (soaking 40seconds) 分子名称: (E)-2-(4-carbamimidoylbenzylideneaminooxy)-2-methylpropanoic acid, CALCIUM ION, Cationic trypsin 著者 Yamane, J, Yao, M, Tanaka, I. 登録日 2009-10-05 公開日 2010-09-29 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 In-Crystal Chemical Ligation for Drug Discovery To be Published
1K2V	E. COLI PERIPLASMIC PROTEIN FHUD COMPLEXED WITH DESFERAL 分子名称: DEFEROXAMINE MESYLATE FE(III) COMPLEX, Ferrichrome-binding periplasmic protein 著者 Clarke, T.E, Braun, V, Winkelmann, G, Tari, L.W, Vogel, H.J. 登録日 2001-09-29 公開日 2002-04-17 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.97 Å) 主引用文献 X-ray crystallographic structures of the Escherichia coli periplasmic protein FhuD bound to hydroxamate-type siderophores and the antibiotic albomycin. J.Biol.Chem., 277, 2002
1LN4	CRYSTAL STRUCTURE OF E. COLI YHBY 分子名称: Hypothetical protein yhbY 著者 Ostheimer, G.J, Barkan, A, Matthews, B.W. 登録日 2002-05-02 公開日 2002-05-15 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Crystal structure of E. coli YhbY: a representative of a novel class of RNA binding proteins Structure, 10, 2002
3CW5	E. coli Initiator tRNA 分子名称: Initiator tRNA 著者 Barraud, P, Schmitt, E, Mechulam, Y, Dardel, F, Tisne, C. 登録日 2008-04-21 公開日 2008-09-02 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 A unique conformation of the anticodon stem-loop is associated with the capacity of tRNAfMet to initiate protein synthesis. Nucleic Acids Res., 36, 2008
8JZJ	E.coli Glyceraldehyde-3-phosphate dehydrogenase structure under cryoprotect condition of ammonium sulfate 分子名称: Glyceraldehyde-3-phosphate dehydrogenase, SULFATE ION 著者 Jang, K, Hlaing, S.H.S, Kim, H.G, Kim, N, Choe, H.W, Kim, Y.J. 登録日 2023-07-05 公開日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.99 Å) 主引用文献 E.coli Glyceraldehyde-3-phosphate dehydrogenase structure under cryoprotect condition of ammonium sulfate To Be Published
1S98	E.coli IscA crystal structure to 2.3 A 分子名称: Protein yfhF 著者 Cupp-Vickery, J.R, Silberg, J.J, Ta, D.T, Vickery, L.E. 登録日 2004-02-03 公開日 2004-06-01 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of IscA, an iron-sulfur cluster assembly protein from Escherichia coli. J.Mol.Biol., 338, 2004
4Q65	Structure of the E. coli Peptide Transporter YbgH 分子名称: Dipeptide permease D 著者 Zhang, C, Zhao, Y, Mao, G, Liu, M, Wang, X. 登録日 2014-04-21 公開日 2014-08-13 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Crystal structure of the E. coli peptide transporter YbgH. Structure, 22, 2014
6SLB	Crystal structure of isomerase PaaG with trans-3,4-didehydroadipyl-CoA 分子名称: (~{E})-6-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethylsulfanyl]-6-oxidanylidene-hex-3-enoic acid, Enoyl-CoA hydratase/carnithine racemase 著者 Saleem-Batcha, R, Spieker, M, Teufel, R. 登録日 2019-08-19 公開日 2019-12-11 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.88 Å) 主引用文献 Structural and Mechanistic Basis of an Oxepin-CoA Forming Isomerase in Bacterial Primary and Secondary Metabolism. Acs Chem.Biol., 14, 2019
3SWA	E. Cloacae MurA R120A complex with UNAG and covalent adduct of PEP with CYS115 分子名称: 1,2-ETHANEDIOL, UDP-N-acetylglucosamine 1-carboxyvinyltransferase, URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE 著者 Han, H, Zhu, J.-Y, Schonbrunn, E. 登録日 2011-07-13 公開日 2012-03-07 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Functional Consequence of Covalent Reaction of Phosphoenolpyruvate with UDP-N-acetylglucosamine 1-Carboxyvinyltransferase (MurA). J.Biol.Chem., 287, 2012
3SWI	E. Cloacae MurA in complex with Enolpyruvyl-UDP-N-acetylgalactosamine and covalent adduct of PEP with CYS115 分子名称: 2-(2-METHOXYETHOXY)ETHANOL, 2-{[(2R,3R,4R,5R,6R)-3-(acetylamino)-2-{[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-5-hydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-4-yl]oxy}prop-2-enoic acid, MAGNESIUM ION, ... 著者 Zhu, J.-Y, Yang, Y, Schonbrunn, E. 登録日 2011-07-13 公開日 2012-03-07 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Functional Consequence of Covalent Reaction of Phosphoenolpyruvate with UDP-N-acetylglucosamine 1-Carboxyvinyltransferase (MurA). J.Biol.Chem., 287, 2012

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