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4WQ7
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BU of 4wq7 by Molmil
Thiosulfate dehydrogenase (TsdA) from Allochromatium vinosum - "as isolated" form
分子名称: HEME C, IODIDE ION, SULFATE ION, ...
著者Brito, J.A, Denkmann, K, Pereira, I.A.C, Dahl, C, Archer, M.
登録日2014-10-21
公開日2015-02-18
最終更新日2015-04-15
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Thiosulfate Dehydrogenase (TsdA) from Allochromatium vinosum: STRUCTURAL AND FUNCTIONAL INSIGHTS INTO THIOSULFATE OXIDATION.
J.Biol.Chem., 290, 2015
2UPJ
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BU of 2upj by Molmil
HIV-1 PROTEASE COMPLEX WITH U100313 ([3-[[3-[CYCLOPROPYL [4-HYDROXY-2OXO-6-[1-(PHENYLMETHYL)PROPYL]-2H-PYRAN-3-YL] METHYL]PHENYL]AMINO]-3-OXO-PROPYL]CARBAMIC ACID TERT-BUTYL ESTER)
分子名称: HIV-1 PROTEASE, [2-(3-{[6-(1-BENZYL-PROPYL)-4-HYDROXY-2-OXO-2H-PYRAN-3-YL]-CYCLOPROPYL-METHYL}-PHENYLCARBAMOYL)-ETHYL]-CARBAMIC ACID TERT-BUTYL ESTER
著者Watenpaugh, K.D, Mulichak, A.M, Janakiraman, M.N.
登録日1996-03-04
公開日1996-10-14
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure-based design of novel HIV protease inhibitors: carboxamide-containing 4-hydroxycoumarins and 4-hydroxy-2-pyrones as potent nonpeptidic inhibitors.
J.Med.Chem., 38, 1995
7AT4
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BU of 7at4 by Molmil
Structure of EstD11 in complex with Naproxen
分子名称: (2R)-2-(6-methoxynaphthalen-2-yl)propanoic acid, EstD11, FORMIC ACID
著者Miguel-Ruano, V, Rivera, I, Hermoso, J.A.
登録日2020-10-28
公開日2021-03-03
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Biochemical and Structural Characterization of a novel thermophilic esterase EstD11 provide catalytic insights for the HSL family.
Comput Struct Biotechnol J, 19, 2021
7NQ4
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BU of 7nq4 by Molmil
Human tRNA guanine transglycosylase (TGT), RNA-bound covalent intermediate
分子名称: 9-DEAZAGUANINE, Queuine tRNA-ribosyltransferase accessory subunit 2, Queuine tRNA-ribosyltransferase catalytic subunit 1, ...
著者Sievers, K, Ficner, R.
登録日2021-03-01
公開日2021-08-11
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.88 Å)
主引用文献Structural and functional insights into human tRNA guanine transgylcosylase.
Rna Biol., 18, 2021
6EYC
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BU of 6eyc by Molmil
Re-refinement of the MCM2-7 double hexamer using ISOLDE
分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA replication licensing factor MCM2, DNA replication licensing factor MCM3, ...
著者Croll, T.I.
登録日2017-11-11
公開日2018-06-20
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献ISOLDE: a physically realistic environment for model building into low-resolution electron-density maps.
Acta Crystallogr D Struct Biol, 74, 2018
5JXD
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BU of 5jxd by Molmil
Crystal structure of murine Tnfaip8 C165S mutant
分子名称: Tumor necrosis factor alpha-induced protein 8, [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate
著者Park, J, Kim, M.S, Lee, D, Shin, D.H.
登録日2016-05-13
公開日2017-06-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.029 Å)
主引用文献The Tnfaip8-PE complex is a novel upstream effector in the anti-autophagic action of insulin
Sci Rep, 7, 2017
8J9C
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BU of 8j9c by Molmil
Crystal structure of M61 peptidase (apo-form) from Xanthomonas campestris
分子名称: GLYCEROL, Putative glycyl aminopeptidase, SODIUM ION, ...
著者Yadav, P, Kumar, A, Jamdar, S.N, Makde, R.D.
登録日2023-05-03
公開日2024-05-01
最終更新日2024-07-31
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of a newly identified M61 family aminopeptidase with broad substrate specificity that is solely responsible for recycling acidic amino acids.
Febs J., 291, 2024
7NWU
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Co-crystal structure of UPF3B-RRM-NOPS-L with UPF2-MIF4GIII
分子名称: PENTAETHYLENE GLYCOL, Regulator of nonsense transcripts 2, Regulator of nonsense transcripts 3B, ...
著者Powers, K.T, Bufton, J.C, Szeto, J.A, Schaffitzel, C.
登録日2021-03-17
公開日2022-07-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structures of nonsense-mediated mRNA decay factors UPF3B and UPF3A in complex with UPF2 reveal molecular basis for competitive binding and for neurodevelopmental disorder-causing mutation.
Nucleic Acids Res., 50, 2022
7QUV
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BU of 7quv by Molmil
Crystal structure of human Calprotectin (S100A8/S100A9) in complex with Peptide 3
分子名称: 1,2-ETHANEDIOL, 4-methanoyl-2-(6-oxidanyl-3-oxidanylidene-4~{H}-xanthen-9-yl)benzoic acid, AMINO GROUP, ...
著者Diaz-Perlas, C, Heinis, C, Pojer, F, Lau, K.
登録日2022-01-19
公開日2023-02-01
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献High-affinity peptides developed against calprotectin and their application as synthetic ligands in diagnostic assays.
Nat Commun, 14, 2023
8JMR
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BU of 8jmr by Molmil
Crystal structure of hinokiresinol synthase in complex with 1,7-bis(4-hydroxyphenyl)hepta-1,6-dien-3-one
分子名称: 1,7-bis(4-hydroxyphenyl)hepta-1,6-dien-3-one, Hinokiresinol synthase alpha subunit, Hinokiresinol synthase beta subunit, ...
著者Ding, Y, Ushimaru, R, Mori, T, Abe, I.
登録日2023-06-05
公開日2023-12-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural and Mechanistic Insights into the C-C Bond-Forming Rearrangement Reaction Catalyzed by Heterodimeric Hinokiresinol Synthase.
J.Am.Chem.Soc., 145, 2023
8JMQ
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BU of 8jmq by Molmil
Crystal structure of hinokiresinol synthase
分子名称: Hinokiresinol synthase alpha subunit, Hinokiresinol synthase beta subunit
著者Ding, Y, Ushimaru, R, Mori, T, Abe, I.
登録日2023-06-05
公開日2023-12-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural and Mechanistic Insights into the C-C Bond-Forming Rearrangement Reaction Catalyzed by Heterodimeric Hinokiresinol Synthase.
J.Am.Chem.Soc., 145, 2023
6G4S
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BU of 6g4s by Molmil
Cryo-EM structure of a late human pre-40S ribosomal subunit - State B
分子名称: 40S ribosomal protein S11, 40S ribosomal protein S13, 40S ribosomal protein S14, ...
著者Ameismeier, M, Cheng, J, Berninghausen, O, Beckmann, R.
登録日2018-03-28
公開日2018-06-06
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Visualizing late states of human 40S ribosomal subunit maturation.
Nature, 558, 2018
6G2D
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BU of 6g2d by Molmil
Citrate-induced acetyl-CoA carboxylase (ACC-Cit) filament at 5.4 A resolution
分子名称: Acetyl-CoA carboxylase 1
著者Hunkeler, M, Hagmann, A, Stuttfeld, E, Chami, M, Stahlberg, H, Maier, T.
登録日2018-03-23
公開日2018-06-13
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (5.4 Å)
主引用文献Structural basis for regulation of human acetyl-CoA carboxylase.
Nature, 558, 2018
7RM9
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BU of 7rm9 by Molmil
Human Malate Dehydrogenase I (MDHI)
分子名称: MALONATE ION, Malate dehydrogenase, cytoplasmic
著者McCue, W, Finzel, B.C.
登録日2021-07-27
公開日2022-01-05
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Structural Characterization of the Human Cytosolic Malate Dehydrogenase I.
Acs Omega, 7, 2022
6G2I
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BU of 6g2i by Molmil
Filament of acetyl-CoA carboxylase and BRCT domains of BRCA1 (ACC-BRCT) at 5.9 A resolution
分子名称: Acetyl-CoA carboxylase 1, Breast cancer type 1 susceptibility protein
著者Hunkeler, M, Hagmann, A, Stuttfeld, E, Chami, M, Stahlberg, H, Maier, T.
登録日2018-03-23
公開日2018-06-13
最終更新日2019-12-11
実験手法ELECTRON MICROSCOPY (5.9 Å)
主引用文献Structural basis for regulation of human acetyl-CoA carboxylase.
Nature, 558, 2018
5IT7
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BU of 5it7 by Molmil
Structure of the Kluyveromyces lactis 80S ribosome in complex with the cricket paralysis virus IRES and eEF2
分子名称: (2S)-1-amino-N,N,N-trimethyl-1-oxobutan-2-aminium, 18S ribosomal RNA, 25S ribosomal RNA, ...
著者Murray, J, Savva, C.G, Shin, B.S, Dever, T.E, Ramakrishnan, V, Fernandez, I.S.
登録日2016-03-16
公開日2016-05-18
最終更新日2018-11-21
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Structural characterization of ribosome recruitment and translocation by type IV IRES.
Elife, 5, 2016
6G4W
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BU of 6g4w by Molmil
Cryo-EM structure of a late human pre-40S ribosomal subunit - State A
分子名称: 18S ribosomal RNA, 40S ribosomal protein S11, 40S ribosomal protein S13, ...
著者Ameismeier, M, Cheng, J, Berninghausen, O, Beckmann, R.
登録日2018-03-28
公開日2018-06-06
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (4.5 Å)
主引用文献Visualizing late states of human 40S ribosomal subunit maturation.
Nature, 558, 2018
8OJ5
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BU of 8oj5 by Molmil
60S ribosomal subunit bound to the E3-UFM1 complex - state 3 (in-vitro reconstitution)
分子名称: 28S rRNA, 5.8S rRNA, 5S rRNA, ...
著者Penchev, I, DaRosa, P.A, Peter, J.J, Kulathu, Y, Becker, T, Beckmann, R, Kopito, R.
登録日2023-03-23
公開日2024-02-21
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献UFM1 E3 ligase promotes recycling of 60S ribosomal subunits from the ER.
Nature, 627, 2024
5III
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BU of 5iii by Molmil
Crystal structure of the pre-catalytic ternary complex of DNA polymerase lambda with a templating 8-oxo-dG and an incoming dATP
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*GP*TP*AP*(DOC))-3'), DNA (5'-D(*CP*GP*GP*CP*(8OG)P*GP*TP*AP*CP*TP*G)-3'), ...
著者Burak, M.J, Guja, K.E, Garcia-Diaz, M.
登録日2016-03-01
公開日2016-08-17
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献A fidelity mechanism in DNA polymerase lambda promotes error-free bypass of 8-oxo-dG.
Embo J., 35, 2016
7R8J
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BU of 7r8j by Molmil
Crystal structure of Pseudooceanicola lipolyticus Argonaute bound to 5' p guide DNA in the presence of Mg2+
分子名称: Argonaute, DNA (5'-D(*TP*TP*AP*CP*TP*GP*CP*AP*CP*AP*GP*GP*TP*GP*AP*CP*GP*A)-3')
著者Shin, Y, Murakami, K.S.
登録日2021-06-26
公開日2022-07-06
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity.
Nat Commun, 13, 2022
4LUH
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BU of 4luh by Molmil
Complex of ovine serum albumin with 3,5-diiodosalicylic acid
分子名称: (2R)-2-{[(2R)-2-{[(2S)-2-{[(2R)-2-hydroxypropyl]oxy}propyl]oxy}propyl]oxy}propan-1-ol, (2S)-2-hydroxybutanedioic acid, 2-HYDROXY-3,5-DIIODO-BENZOIC ACID, ...
著者Bujacz, A, Talaj, J.A, Pietrzyk, A.J, Bujacz, G.
登録日2013-07-25
公開日2014-09-17
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of ovine serum albumin and its complex with 3,5-diiodosalicylic acid
To be Published
7R8K
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Crystal structure of Pseudooceanicola lipolyticus Argonaute (SeMet labeled protein)
分子名称: Argonaute
著者Shin, Y, Murakami, K.S.
登録日2021-06-26
公開日2022-07-06
最終更新日2022-12-28
実験手法X-RAY DIFFRACTION (3.28 Å)
主引用文献Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity.
Nat Commun, 13, 2022
7R8G
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BU of 7r8g by Molmil
Crystal structure of Pseudooceanicola lipolyticus Argonaute bound to 5' OH guide DNA
分子名称: Argonaute, DNA (5'-D(*TP*AP*CP*TP*GP*CP*AP*CP*AP*GP*GP*TP*GP*AP*CP*GP*A)-3')
著者Shin, Y, Murakami, K.S.
登録日2021-06-26
公開日2022-07-06
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity.
Nat Commun, 13, 2022
7R8H
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BU of 7r8h by Molmil
Crystal structure of Pseudooceanicola lipolyticus Argonaute bound to 5' p guide DNA
分子名称: Argonaute, DNA (5'-D(*TP*TP*AP*CP*TP*GP*CP*AP*CP*AP*GP*GP*TP*GP*AP*CP*GP*A)-3')
著者Shin, Y, Murakami, K.S.
登録日2021-06-26
公開日2022-07-06
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.54 Å)
主引用文献Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity.
Nat Commun, 13, 2022
8JJS
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Human K-Ras G12D (GDP-bound) in complex with cyclic peptide inhibitor AP10343
分子名称: GUANOSINE-5'-DIPHOSPHATE, Isoform 2B of GTPase KRas, MAA-ILE-SAR-SAR-7T2-SAR-IAE-LEU-MEA-MLE-7TK, ...
著者Irie, M, Fukami, T.A, Tanada, M, Ohta, A, Torizawa, T.
登録日2023-05-31
公開日2023-07-26
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.534 Å)
主引用文献Development of Orally Bioavailable Peptides Targeting an Intracellular Protein: From a Hit to a Clinical KRAS Inhibitor.
J.Am.Chem.Soc., 145, 2023

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