PDB: 71425 件ウェブページステータス検索Chemie searchBIRD

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5INK	Mouse Tdp2 reaction product (5'-phosphorylated DNA)-abasic/THF-Mg2+ complex 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, DNA (5'-D(P*(3DR)P*CP*GP*AP*AP*TP*TP*CP*G)-3'), ... 著者 Schellenberg, M.J, Williams, R.S. 登録日 2016-03-07 公開日 2016-04-27 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Reversal of DNA damage induced Topoisomerase 2 DNA-protein crosslinks by Tdp2. Nucleic Acids Res., 44, 2016
5INM	Mouse Tdp2 protein, apo state with variable DNA-binding grasp conformations 分子名称: GLYCEROL, MAGNESIUM ION, SULFATE ION, ... 著者 Schellenberg, M.J, Williams, R.S. 登録日 2016-03-07 公開日 2016-04-27 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Reversal of DNA damage induced Topoisomerase 2 DNA-protein crosslinks by Tdp2. Nucleic Acids Res., 44, 2016
5IUK	Crystal structure of the DesK-DesR complex in the phosphotransfer state with high Mg2+ (150 mM) 分子名称: MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, POTASSIUM ION, ... 著者 Trajtenberg, F, Imelio, J.A, Larrieux, N, Buschiazzo, A. 登録日 2016-03-18 公開日 2016-12-21 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Regulation of signaling directionality revealed by 3D snapshots of a kinase:regulator complex in action. Elife, 5, 2016
2BTG	peripheral-subunit binding domains from mesophilic,thermophilic, and hyperthermophilic bacteria fold by ultrafast, apparently two-state transitions 分子名称: DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX 著者 Ferguson, N, Allen, M.D. 登録日 2005-05-31 公開日 2006-05-24 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Ultra-Fast Barrier-Limited Folding in the Peripheral Subunit-Binding Domain Family. J.Mol.Biol., 353, 2005
2BTH	Peripheral-subunit binding domains from mesophilic, thermophilic, and hyperthermophilic bacteria fold by ultrafast, apparently two-state transitions 分子名称: DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX 著者 Ferguson, N, Allen, M.D. 登録日 2005-05-31 公開日 2006-05-24 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Ultra-Fast Barrier-Limited Folding in the Peripheral Subunit-Binding Domain Family. J.Mol.Biol., 353, 2005
7NNP	Rb-loaded cryo-EM structure of the E1-ATP KdpFABC complex. 分子名称: CARDIOLIPIN, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, Potassium-transporting ATPase ATP-binding subunit, ... 著者 Silberberg, J.M, Corey, R.A, Hielkema, L, Stock, C, Stansfeld, P.J, Paulino, C, Haenelt, I. 登録日 2021-02-25 公開日 2021-07-28 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Deciphering ion transport and ATPase coupling in the intersubunit tunnel of KdpFABC. Nat Commun, 12, 2021
5INO	Human Tdp2 reaction product (5'-phosphorylated DNA)-Mg2+ complex 分子名称: DNA (5'-D(P*CP*CP*GP*AP*AP*TP*TP*CP*G)-3'), SULFATE ION, Tyrosyl-DNA phosphodiesterase 2 著者 Schellenberg, M.J, Williams, R.S. 登録日 2016-03-07 公開日 2016-04-27 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.205 Å) 主引用文献 Reversal of DNA damage induced Topoisomerase 2 DNA-protein crosslinks by Tdp2. Nucleic Acids Res., 44, 2016
5INN	Mouse Tdp2 D358N protein, apo state with increased disorder amongst variable DNA-binding grasp conformations 分子名称: CHLORIDE ION, GLYCEROL, SULFATE ION, ... 著者 Schellenberg, M.J, Appel, C.D, Williams, R.S. 登録日 2016-03-07 公開日 2016-04-27 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Reversal of DNA damage induced Topoisomerase 2 DNA-protein crosslinks by Tdp2. Nucleic Acids Res., 44, 2016
3JQH	Structure of the neck region of the glycan-binding receptor DC-SIGNR 分子名称: C-type lectin domain family 4 member M 著者 Feinberg, H, Tso, C.K.W, Taylor, M.E, Drickamer, K, Weis, W.I. 登録日 2009-09-06 公開日 2009-11-10 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.201 Å) 主引用文献 Segmented helical structure of the neck region of the glycan-binding receptor DC-SIGNR. J.Mol.Biol., 394, 2009
5IUM	Crystal structure of phosphorylated DesKC 分子名称: GLYCEROL, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ... 著者 Trajtenberg, F, Buschiazzo, A. 登録日 2016-03-18 公開日 2016-12-21 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (3.162 Å) 主引用文献 Regulation of signaling directionality revealed by 3D snapshots of a kinase:regulator complex in action. Elife, 5, 2016
3JS1	Crystal structure of adipocyte fatty acid binding protein covalently modified with 4-hydroxy-2-nonenal 分子名称: Adipocyte fatty acid-binding protein, PHOSPHATE ION 著者 Hellberg, K, Grimsrud, P.A, Kruse, A.C, Banaszak, L.J, Ohlendorf, D.H, Bernlohr, D.A. 登録日 2009-09-09 公開日 2010-08-25 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.81 Å) 主引用文献 X-ray crystallographic analysis of adipocyte fatty acid binding protein (aP2) modified with 4-hydroxy-2-nonenal. Protein Sci., 19, 2010
1KTV	Crystal Structure of Elongation Factor G Dimer Without Nucleotide 分子名称: ELONGATION FACTOR G 著者 Laurberg, M, Kristensen, O, Su, X.D, Liljas, A. 登録日 2002-01-17 公開日 2003-12-23 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (3.8 Å) 主引用文献 A New Crystal Form of Thermus thermophilus Elongation Factor G Indicates Crystallographic Limitations Imposed on Molecular Flexibility To be Published
2B98	Crystal Structure of an archaeal pentameric riboflavin synthase 分子名称: Riboflavin synthase 著者 Ramsperger, A, Augustin, M, Schott, A.K, Gerhardt, S, Krojer, T, Eisenreich, W, Illarionov, B, Cushman, M, Bacher, A, Huber, R, Fischer, M. 登録日 2005-10-11 公開日 2005-11-08 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal Structure of an Archaeal Pentameric Riboflavin Synthase in Complex with a Substrate Analog Inhibitor: stereochemical implications J.Biol.Chem., 281, 2006
2BBC	Structure of Cobalamin-complexed Bovine Transcobalamin in trigonal crystal form 分子名称: CHLORIDE ION, COBALAMIN, Transcobalamin II 著者 Wuerges, J, Garau, G, Geremia, S, Fedosov, S.N, Petersen, T.E, Randaccio, L. 登録日 2005-10-17 公開日 2006-04-04 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural basis for mammalian vitamin B12 transport by transcobalamin. Proc.Natl.Acad.Sci.Usa, 103, 2006
2V24	Structure of the human SPRY domain-containing SOCS box protein SSB-4 分子名称: NICKEL (II) ION, SPRY DOMAIN-CONTAINING SOCS BOX PROTEIN 4 著者 Uppenberg, J, Bullock, A, Keates, T, Savitsky, P, Pike, A.C.W, Ugochukwu, E, Bunkoczi, G, von Delft, F, Weigelt, J, Arrowsmith, C.H, Edwards, A, Sundstrom, M, Knapp, S. 登録日 2007-05-31 公開日 2007-07-17 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural Basis for Par-4 Recognition by the Spry Domain-and Socs Box-Containing Proteins Spsb1, Spsb2, and Spsb4. J.Mol.Biol., 401, 2010
2B63	Complete RNA Polymerase II-RNA inhibitor complex 分子名称: 31-MER, DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerase II 140 kDa polypeptide, ... 著者 Kettenberger, H, Eisenfuehr, A, Brueckner, F, Theis, M, Famulok, M, Cramer, P. 登録日 2005-09-30 公開日 2005-12-06 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (3.8 Å) 主引用文献 Structure of an RNA polymerase II-RNA inhibitor complex elucidates transcription regulation by noncoding RNAs Nat.Struct.Mol.Biol., 13, 2006
3JSQ	Crystal structure of adipocyte fatty acid binding protein non-covalently modified with 4-hydroxy-2-nonenal 分子名称: (2E,4R)-4-HYDROXYNON-2-ENAL, Adipocyte fatty acid-binding protein, CHLORIDE ION, ... 著者 Hellberg, K, Grimsrud, P.A, Kruse, A.C, Banaszak, L.J, Ohlendorf, D.H, Bernlohr, D.A. 登録日 2009-09-10 公開日 2010-08-25 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 X-ray crystallographic analysis of adipocyte fatty acid binding protein (aP2) modified with 4-hydroxy-2-nonenal. Protein Sci., 19, 2010
3J8C	Model of the human eIF3 PCI-MPN octamer docked into the 43S EM map 分子名称: Eukaryotic translation initiation factor 3 subunit A, Eukaryotic translation initiation factor 3 subunit C, Eukaryotic translation initiation factor 3 subunit E, ... 著者 Erzberger, J.P, Ban, N. 登録日 2014-10-08 公開日 2014-10-22 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (11.6 Å) 主引用文献 Molecular Architecture of the 40SeIF1eIF3 Translation Initiation Complex. Cell(Cambridge,Mass.), 158, 2014
2BDW	Crystal Structure of the Auto-Inhibited Kinase Domain of Calcium/Calmodulin Activated Kinase II 分子名称: Hypothetical protein K11E8.1d 著者 Rosenberg, O.S, Kuriyan, J. 登録日 2005-10-20 公開日 2005-12-13 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structure of the Autoinhibited Kinase Domain of CaMKII and SAXS Analysis of the Holoenzyme Cell(Cambridge,Mass.), 123, 2005
3J8B	Model of the human eIF3 PCI-MPN octamer docked into the 43S-HCV IRES EM map 分子名称: Eukaryotic translation initiation factor 3 subunit A, Eukaryotic translation initiation factor 3 subunit C, Eukaryotic translation initiation factor 3 subunit E, ... 著者 Erzberger, J.P, Ban, N. 登録日 2014-10-08 公開日 2014-10-22 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (9.3 Å) 主引用文献 Molecular Architecture of the 40SeIF1eIF3 Translation Initiation Complex. Cell(Cambridge,Mass.), 158, 2014
5IUJ	Crystal structure of the DesK-DesR complex in the phosphotransfer state with low Mg2+ (20 mM) 分子名称: MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, POTASSIUM ION, ... 著者 Trajtenberg, F, Imelio, J.A, Larrieux, N, Buschiazzo, A. 登録日 2016-03-18 公開日 2016-12-21 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Regulation of signaling directionality revealed by 3D snapshots of a kinase:regulator complex in action. Elife, 5, 2016
5IUL	Crystal structure of the DesK-DesR complex in the phosphotransfer state with high Mg2+ (150 mM) and BeF3 分子名称: MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, POTASSIUM ION, ... 著者 Trajtenberg, F, Imelio, J.A, Larrieux, N, Buschiazzo, A. 登録日 2016-03-18 公開日 2016-12-21 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (3.153 Å) 主引用文献 Regulation of signaling directionality revealed by 3D snapshots of a kinase:regulator complex in action. Elife, 5, 2016
2BB6	Structure of Cobalamin-complexed Bovine Transcobalamin in Monoclinic Crystal Form 分子名称: CHLORIDE ION, COBALAMIN, Transcobalamin II 著者 Wuerges, J, Garau, G, Geremia, S, Fedosov, S.N, Petersen, T.E, Randaccio, L. 登録日 2005-10-17 公開日 2006-04-04 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural basis for mammalian vitamin B12 transport by transcobalamin. Proc.Natl.Acad.Sci.Usa, 103, 2006
5HKK	Caldalaklibacillus thermarum F1-ATPase (wild type) 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... 著者 Ferguson, S.A, Cook, G.M, Montgomery, M.G, Leslie, A.G.W, Walker, J.E. 登録日 2016-01-14 公開日 2016-09-21 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Regulation of the thermoalkaliphilic F1-ATPase from Caldalkalibacillus thermarum. Proc.Natl.Acad.Sci.USA, 113, 2016
3KVE	Structure of native L-amino acid oxidase from Vipera ammodytes ammodytes: stabilization of the quaternary structure by divalent ions and structural changes in the dynamic active site 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, FLAVIN-ADENINE DINUCLEOTIDE, L-amino acid oxidase, ... 著者 Gergiova, D, Murakami, M.T, Perbandt, M, Arni, R.K, Betzel, C. 登録日 2009-11-30 公開日 2010-10-13 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.57 Å) 主引用文献 Structure of native L-amino acid oxidase from Vipera ammodytes ammodytes: stabilization of the quaternary structure by divalent ions and structural changes in the dynamic active site To be Published

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