Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5D9T
DownloadVisualize
BU of 5d9t by Molmil
Crystal structure of dehydroascorbate reductase (OsDHAR) from Oryza sativa L. japonica
分子名称: Dehydroascorbate reductase, SODIUM ION
著者Do, H, Lee, J.H.
登録日2015-08-19
公開日2016-02-03
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural understanding of the recycling of oxidized ascorbate by dehydroascorbate reductase (OsDHAR) from Oryza sativa L. japonica
Sci Rep, 6, 2016
6ZS1
DownloadVisualize
BU of 6zs1 by Molmil
Chaetomium thermophilum CuZn-superoxide dismutase
分子名称: COPPER (II) ION, GLYCEROL, PHOSPHATE ION, ...
著者Papageorgiou, A.C, Mohsin, I.
登録日2020-07-15
公開日2021-04-07
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Crystal Structure of a Cu,Zn Superoxide Dismutase From the Thermophilic Fungus Chaetomium thermophilum.
Protein Pept.Lett., 28, 2021
4OWC
DownloadVisualize
BU of 4owc by Molmil
PtI6 binding to HEWL
分子名称: CHLORIDE ION, IODIDE ION, Lysozyme C, ...
著者Tanley, S.W.M, Starkey, V.L, Lamplough, L, Kaenket, S, Helliwell, J.R.
登録日2014-01-31
公開日2014-09-24
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献The binding of platinum hexahalides (Cl, Br and I) to hen egg-white lysozyme and the chemical transformation of the PtI6 octahedral complex to a PtI3 moiety bound to His15.
Acta Crystallogr.,Sect.F, 70, 2014
5DJF
DownloadVisualize
BU of 5djf by Molmil
Structure of M. tuberculosis CysQ, a PAP phosphatase - ligand-free structure
分子名称: 3'-phosphoadenosine 5'-phosphate phosphatase, GLYCEROL, SODIUM ION
著者Erickson, A.I, Fisher, A.J.
登録日2015-09-02
公開日2015-11-11
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structures of Mycobacterium tuberculosis CysQ, with Substrate and Products Bound.
Biochemistry, 54, 2015
5DRF
DownloadVisualize
BU of 5drf by Molmil
Green/cyan WasCFP-pH5.5 at pH 5.5
分子名称: GLYCEROL, SODIUM ION, WasCFP-pH5.5 at pH 5.5
著者Pletnev, V.Z, Pletneva, N.V, Pletnev, S.V.
登録日2015-09-15
公開日2016-07-27
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.14 Å)
主引用文献Crystal structure of pH and T dependent green fluorescent protein WasCFP with Trp based chromophore
Russ.J.Bioorganic Chem., 42 (6), 2016
5DLL
DownloadVisualize
BU of 5dll by Molmil
Aminopeptidase N (pepN) from Francisella tularensis subsp. tularensis SCHU S4
分子名称: Aminopeptidase N, CHLORIDE ION, PHOSPHATE ION, ...
著者Borek, D, Raczynska, J, Dubrovska, I, Grimshaw, S, Minasov, G, Shuvalova, L, Kwon, K, Anderson, W.F, Otwinowski, Z, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2015-09-07
公開日2015-09-16
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.51 Å)
主引用文献Aminopeptidase N (pepN) from Francisella tularensis subsp. tularensis SCHU S4
To Be Published
5DQB
DownloadVisualize
BU of 5dqb by Molmil
Green/cyan WasCFP at pH 8.0
分子名称: GLYCEROL, SODIUM ION, WasCFP_pH2
著者Pletnev, V, Pletneva, N, Pletnev, S.
登録日2015-09-14
公開日2016-07-27
最終更新日2019-02-20
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Crystal structure of pH and T dependent green fluorescent protein WasCFP with Trp based chromophore
Russ.J.Bioorganic Chem., 42 (6), 2016
5DJJ
DownloadVisualize
BU of 5djj by Molmil
Structure of M. tuberculosis CysQ, a PAP phosphatase with PO4 and 2Mg bound
分子名称: 3'-phosphoadenosine 5'-phosphate phosphatase, MAGNESIUM ION, PHOSPHATE ION, ...
著者Fisher, A.J, Erickson, A.I.
登録日2015-09-02
公開日2015-11-11
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.501 Å)
主引用文献Crystal Structures of Mycobacterium tuberculosis CysQ, with Substrate and Products Bound.
Biochemistry, 54, 2015
5DKT
DownloadVisualize
BU of 5dkt by Molmil
N-terminal His tagged apPOL exonuclease mutant
分子名称: Prex DNA polymerase, SODIUM ION, SULFATE ION
著者Milton, M.E, Honzatko, R.B, Choe, J.Y, Nelson, S.W.
登録日2015-09-04
公開日2016-08-10
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystal Structure of the Apicoplast DNA Polymerase from Plasmodium falciparum: The First Look at a Plastidic A-Family DNA Polymerase.
J.Mol.Biol., 428, 2016
5DLD
DownloadVisualize
BU of 5dld by Molmil
Crystal Structure of a UDP-N-acetylglucosamine 2-epimerase from Burkholderia vietnamiensis complexed with UDP-GlcNAc and UDP
分子名称: 1,2-ETHANEDIOL, ACETATE ION, GLYCEROL, ...
著者Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2015-09-04
公開日2015-09-30
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Crystal Structure of a UDP-N-acetylglucosamine 2-epimerase from Burkholderia vietnamiensis complexed with UDP-GlcNAc and UDP
to be published
4OJ1
DownloadVisualize
BU of 4oj1 by Molmil
Crystal structure of truncated Acylphosphatase from S. sulfataricus
分子名称: Acylphosphatase, CHLORIDE ION, SODIUM ION
著者Dilovic, I, Bolognesi, M, Ricagno, S.
登録日2014-01-20
公開日2014-02-05
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of truncated Acylphosphatase from S. sulfataricus
TO BE PUBLISHED
5DRH
DownloadVisualize
BU of 5drh by Molmil
Crystal structure of apo C-As lyase
分子名称: Glyoxalase/bleomycin resistance protein/dioxygenase, SODIUM ION
著者Venkadesh, S, Yoshinaga, M, Sankaran, B, Kandavelu, P, Rosen, B.P.
登録日2015-09-15
公開日2016-09-21
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.27 Å)
主引用文献Crystal structure of apo C-As lyase
To Be Published
7QRU
DownloadVisualize
BU of 7qru by Molmil
Structure of Bacillus pseudofirmus Mrp antiporter complex, monomer
分子名称: 1,2-Distearoyl-sn-glycerophosphoethanolamine, Na(+)/H(+) antiporter subunit B, Na(+)/H(+) antiporter subunit C, ...
著者Lee, Y.
登録日2022-01-12
公開日2022-11-09
実験手法ELECTRON MICROSCOPY (2.24 Å)
主引用文献Ion transfer mechanisms in Mrp-type antiporters from high resolution cryoEM and molecular dynamics simulations.
Nat Commun, 13, 2022
6VSU
DownloadVisualize
BU of 6vsu by Molmil
Arginase from Arabidopsis thaliana in Complex with Ornithine
分子名称: Arginase 1, mitochondrial, DI(HYDROXYETHYL)ETHER, ...
著者Sekula, B.
登録日2020-02-11
公開日2020-08-12
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献The Neighboring Subunit Is Engaged to Stabilize the Substrate in the Active Site of Plant Arginases.
Front Plant Sci, 11, 2020
6D9X
DownloadVisualize
BU of 6d9x by Molmil
Discovery of Potent 2-Aryl-6,7-Dihydro-5HPyrrolo[ 1,2-a]imidazoles as WDR5 WIN-site Inhibitors Using Fragment-Based Methods and Structure-Based Design
分子名称: 2-phenyl-6,7-dihydro-5H-pyrrolo[1,2-a]imidazole, SODIUM ION, WD repeat-containing protein 5
著者Phan, J, Fesik, S.W.
登録日2018-04-30
公開日2018-09-05
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Discovery of Potent 2-Aryl-6,7-dihydro-5 H-pyrrolo[1,2- a]imidazoles as WDR5-WIN-Site Inhibitors Using Fragment-Based Methods and Structure-Based Design.
J. Med. Chem., 61, 2018
6D55
DownloadVisualize
BU of 6d55 by Molmil
Ras:SOS:Ras in complex with a small molecule activator
分子名称: 6-chloro-2-(2,6-diazaspiro[3.3]heptan-2-yl)-1-[(4-fluoro-3,5-dimethylphenyl)methyl]-4-(4-methylpiperazin-1-yl)-1H-benzimidazole, FORMIC ACID, GLYCEROL, ...
著者Phan, J, Hodges, T, Fesik, S.W.
登録日2018-04-19
公開日2018-09-19
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Discovery and Structure-Based Optimization of Benzimidazole-Derived Activators of SOS1-Mediated Nucleotide Exchange on RAS.
J. Med. Chem., 61, 2018
2FV7
DownloadVisualize
BU of 2fv7 by Molmil
Crystal structure of human ribokinase
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Ribokinase, ...
著者Rabeh, W.M, Tempel, W, Nedyalkova, L, Arrowsmith, C, Edwards, A, Sundstrom, M, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC)
登録日2006-01-30
公開日2006-02-28
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of human ribokinase
to be published
6DAM
DownloadVisualize
BU of 6dam by Molmil
Crystal structure of lanthanide-dependent methanol dehydrogenase XoxF from Methylomicrobium buryatense 5G
分子名称: LANTHANUM (III) ION, Lanthanide-dependent methanol dehydrogenase XoxF, PYRROLOQUINOLINE QUINONE, ...
著者Deng, Y, Ro, S.Y, Rosenzweig, A.C.
登録日2018-05-01
公開日2018-09-05
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structure and function of the lanthanide-dependent methanol dehydrogenase XoxF from the methanotroph Methylomicrobium buryatense 5GB1C.
J. Biol. Inorg. Chem., 23, 2018
6DBD
DownloadVisualize
BU of 6dbd by Molmil
Crystal Structure of VHH R326
分子名称: ACETATE ION, SODIUM ION, nanobody VHH R326
著者Brooks, C.L, Toride King, M, Huh, I.
登録日2018-05-03
公開日2018-07-18
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.755 Å)
主引用文献Structural basis of VHH-mediated neutralization of the food-borne pathogenListeria monocytogenes.
J. Biol. Chem., 293, 2018
2FQG
DownloadVisualize
BU of 2fqg by Molmil
Crystal Structures of E. coli Laccase CueO under different copper binding situations
分子名称: Blue copper oxidase cueO, CITRIC ACID, COPPER (II) ION, ...
著者Li, X, Wei, Z, Zhang, M, Teng, M, Gong, W.
登録日2006-01-18
公開日2007-01-30
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structures of E. coli laccase CueO at different copper concentrations.
Biochem.Biophys.Res.Commun., 354, 2007
6KGH
DownloadVisualize
BU of 6kgh by Molmil
Crystal structure of Penicillin binding protein 3 (PBP3) from Mycobacterium tuerculosis (apo-form)
分子名称: COBALT (II) ION, Penicillin-binding protein PbpB, SODIUM ION
著者Lu, Z.K, Zhang, A.L, Liu, X, Guddat, L, Yang, H.T, Rao, Z.H.
登録日2019-07-11
公開日2020-03-11
実験手法X-RAY DIFFRACTION (2.108 Å)
主引用文献Structures ofMycobacterium tuberculosisPenicillin-Binding Protein 3 in Complex with Fivebeta-Lactam Antibiotics Reveal Mechanism of Inactivation.
Mol.Pharmacol., 97, 2020
6KCD
DownloadVisualize
BU of 6kcd by Molmil
Room temperature structure of lysozyme delivered in shortening B by serial millisecond crystallography
分子名称: CHLORIDE ION, Lysozyme C, SODIUM ION
著者Nam, K.H.
登録日2019-06-27
公開日2020-05-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Shortening injection matrix for serial crystallography.
Sci Rep, 10, 2020
2FWF
DownloadVisualize
BU of 2fwf by Molmil
high resolution crystal structure of the C-terminal domain of the electron transfer catalyst DsbD (reduced form)
分子名称: IODIDE ION, SODIUM ION, Thiol:disulfide interchange protein dsbD
著者Stirnimann, C.U, Rozhkova, A, Grauschopf, U, Boeckmann, R.A, Glockshuber, R, Capitani, G, Gruetter, M.G.
登録日2006-02-02
公開日2006-06-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献High-resolution structures of Escherichia coli cDsbD in different redox states: A combined crystallographic, biochemical and computational study
J.Mol.Biol., 358, 2006
6D9D
DownloadVisualize
BU of 6d9d by Molmil
Crystal structure of Corynebacterium diphtheriae UDP-galactopyranose mutase in complex with UDP-GlcNAc (open, oxidized)
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, ISOPROPYL ALCOHOL, SODIUM ION, ...
著者Wangkanont, K, Kiessling, L.L, Forest, K.T.
登録日2018-04-28
公開日2019-05-15
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Substrate recognition by FAD in UDP-galactopyranose mutase
To be published
6DFH
DownloadVisualize
BU of 6dfh by Molmil
BG505 MD64 N332-GT2 SOSIP trimer in complex with germline-reverted BG18 fragment antigen binding
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp160, ...
著者Ozorowski, G, Steichen, J.M, Schief, W.R, Ward, A.B.
登録日2018-05-14
公開日2019-11-06
最終更新日2020-07-29
実験手法ELECTRON MICROSCOPY (3.85 Å)
主引用文献A generalized HIV vaccine design strategy for priming of broadly neutralizing antibody responses.
Science, 366, 2019

222415

件を2024-07-10に公開中

PDB statisticsPDBj update infoContact PDBjnumon