PDB: 46200 件ウェブページステータス検索Chemie searchBIRD

---

3GTG	Backtracked RNA polymerase II complex with 12mer RNA 分子名称: DNA (28-MER), DNA (5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, ... 著者 Wang, D, Bushnell, D.A, Huang, X, Westover, K.D, Levitt, M, Kornberg, R.D. 登録日 2009-03-27 公開日 2009-06-09 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (3.78 Å) 主引用文献 Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution. Science, 324, 2009
5X06	DNA replication regulation protein 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA polymerase III subunit beta, DnaA regulatory inactivator Hda, ... 著者 Kim, J, Cho, Y. 登録日 2017-01-20 公開日 2018-01-24 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.237 Å) 主引用文献 Replication regulation protein To Be Published
4Y97	Crystal Structure of human Pol alpha B-subunit in complex with C-terminal domain of catalytic subunit 分子名称: DNA polymerase alpha catalytic subunit, DNA polymerase alpha subunit B, ZINC ION 著者 Suwa, Y, Gu, J, Baranovskiy, A.G, Babayeva, N.D, Tahirov, T.H. 登録日 2015-02-17 公開日 2015-04-15 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.51 Å) 主引用文献 Crystal Structure of the Human Pol alpha B Subunit in Complex with the C-terminal Domain of the Catalytic Subunit. J.Biol.Chem., 290, 2015
3S17	RNA Polymerase II Initiation Complex with a 9-nt RNA 分子名称: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. 登録日 2011-05-14 公開日 2011-08-10 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Initiation complex structure and promoter proofreading. Science, 333, 2011
4IVZ	A Y37F mutant of C.Esp1396I bound to its highest affinity operator site OM 分子名称: DNA (5'-D(*AP*TP*GP*TP*AP*GP*AP*CP*TP*AP*TP*AP*GP*TP*CP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*TP*GP*TP*CP*GP*AP*CP*TP*AP*TP*AP*GP*TP*CP*TP*AP*CP*A)-3'), Regulatory protein 著者 Martin, R.N.A, McGeehan, J.E, Kneale, G.G. 登録日 2013-01-23 公開日 2014-01-29 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural and Mutagenic Analysis of the RM Controller Protein C.Esp1396I. Plos One, 9, 2014
8HSH	Thermus thermophilus RNA polymerase coreenzyme 分子名称: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... 著者 Murayama, Y, Ehara, H, Sekine, S. 登録日 2022-12-19 公開日 2023-05-03 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structural basis of the transcription termination factor Rho engagement with transcribing RNA polymerase from Thermus thermophilus. Sci Adv, 9, 2023
7D7D	CryoEM structure of gp45-dependent transcription activation complex 分子名称: DNA (nontemplate strand), DNA (template strand), DNA polymerase clamp, ... 著者 Shi, J, Wen, A, Jin, S, Feng, Y. 登録日 2020-10-03 公開日 2021-01-20 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (4.5 Å) 主引用文献 Transcription activation by a sliding clamp. Nat Commun, 12, 2021
3RAQ	Dpo4 extension ternary complex with 3'-terminal primer C base opposite the 1-methylguanine (MG1) lesion 分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, ... 著者 Rechkoblit, O, Patel, D.J. 登録日 2011-03-28 公開日 2011-06-15 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Implications for damage recognition during Dpo4-mediated mutagenic bypass of m1G and m3C lesions. Structure, 19, 2011
2R5Y	Structure of Scr/Exd complex bound to a consensus Hox-Exd site 分子名称: DNA (5'-D(*DAP*DCP*DTP*DCP*DTP*DAP*DTP*DGP*DAP*DTP*DTP*DTP*DAP*DTP*DGP*DGP*DGP*DCP*DTP*DG)-3'), DNA (5'-D(*DTP*DCP*DAP*DGP*DCP*DCP*DCP*DAP*DTP*DAP*DAP*DAP*DTP*DCP*DAP*DTP*DAP*DGP*DAP*DG)-3'), Homeobox protein extradenticle, ... 著者 Aggarwal, A.K, Passner, J.M, Jain, R. 登録日 2007-09-04 公開日 2008-02-05 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Functional specificity of a Hox protein mediated by the recognition of minor groove structure Cell(Cambridge,Mass.), 131, 2007
2MAP	Solution structure of the complex formed by the region 2 of E. coli sigmaE and its cognate -10 promoter element non template strand TGTCAAA. 分子名称: DNA, RNA polymerase sigma factor 著者 Campagne, S, Vorholt, J.A, Allain, F.H.-T. 登録日 2013-07-16 公開日 2014-02-19 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural basis for -10 promoter element melting by environmentally induced sigma factors. Nat.Struct.Mol.Biol., 21, 2014
6PW2	Structural Basis for Cooperative Binding of EBNA1 to the Epstein-Barr Virus Dyad Symmetry Minimal Origin of Replication 分子名称: DNA (62-MER), DNA (62-MER) complementary DNA strand, Epstein-Barr nuclear antigen 1 著者 Messick, T.E, Malecka, K.A, Lieberman, P.M. 登録日 2019-07-22 公開日 2019-08-28 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.01 Å) 主引用文献 Structural Basis for Cooperative Binding of EBNA1 to the Epstein-Barr Virus Dyad Symmetry Minimal Origin of Replication. J.Virol., 93, 2019
8FFZ	TFIIIA-TFIIIC-Brf1-TBP complex bound to 5S rRNA gene 分子名称: DNA (151-MER), Transcription factor IIIA, Transcription factor IIIB 70 kDa subunit,TATA-box-binding protein, ... 著者 Talyzina, A, He, Y. 登録日 2022-12-11 公開日 2023-06-21 最終更新日 2023-08-16 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Structural basis of TFIIIC-dependent RNA polymerase III transcription initiation. Mol.Cell, 83, 2023
6YOV	OCT4-SOX2-bound nucleosome - SHL+6 分子名称: DNA (142-MER), Green fluorescent protein,POU domain, class 5, ... 著者 Michael, A.K, Kempf, G, Cavadini, S, Bunker, R.D, Thoma, N.H. 登録日 2020-04-15 公開日 2020-05-06 最終更新日 2020-07-08 実験手法 ELECTRON MICROSCOPY (3.42 Å) 主引用文献 Mechanisms of OCT4-SOX2 motif readout on nucleosomes. Science, 368, 2020
4V4K	Bacteriophage P22 Portal Protein bound to middle Tail Factor GP4. This file contain the second biological assembly 分子名称: PACKAGED DNA STABILIZATION PROTEIN GP4, PORTAL PROTEIN 著者 Olia, A.S, Cingolani, G. 登録日 2010-04-19 公開日 2014-07-09 最終更新日 2021-10-06 実験手法 X-RAY DIFFRACTION (3.251 Å) 主引用文献 Three-dimensional structure of a viral genome-delivery portal vertex. Nat.Struct.Mol.Biol., 18, 2011
4GBE	Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with SAH 分子名称: DNA adenine methylase, S-ADENOSYL-L-HOMOCYSTEINE 著者 Harmer, J.E, Roach, P.L. 登録日 2012-07-27 公開日 2014-02-26 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.66 Å) 主引用文献 Structural Basis of Selective N-6 adenine methyltransferase Inhibition by Transition State Mimics To be Published
1S77	T7 RNAP product pyrophosphate elongation complex 分子名称: DNA (5'-D(*GP*CP*CP*GP*TP*GP*CP*GP*CP*AP*TP*TP*CP*GP*CP*CP*GP*TP*GP*TP*T)-3'), DNA (5'-D(*TP*TP*TP*AP*CP*GP*TP*TP*GP*CP*GP*CP*AP*CP*GP*GP*C)-3'), DNA-directed RNA polymerase, ... 著者 Yin, Y.W, Steitz, T.A. 登録日 2004-01-29 公開日 2004-03-23 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.69 Å) 主引用文献 The structural mechanism of translocation and helicase activity in T7 RNA polymerase. Cell(Cambridge,Mass.), 116, 2004
4GOL	Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with Methylated Aza-SAM 分子名称: DNA adenine methylase, S-5'-AZAMETHIONINE-5'-DEOXYADENOSINE 著者 Harmer, J.E, Roach, P.L. 登録日 2012-08-20 公開日 2014-02-26 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.57 Å) 主引用文献 Structural Basis of Selective N-6 adenine methyltransferase Inhibition by Transition State Mimic To be Published
3RZD	RNA Polymerase II Initiation Complex with a 5-nt RNA 分子名称: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. 登録日 2011-05-11 公開日 2011-08-10 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Initiation complex structure and promoter proofreading. Science, 333, 2011
3RZO	RNA Polymerase II Initiation Complex with a 4-nt RNA 分子名称: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. 登録日 2011-05-12 公開日 2011-08-10 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Initiation complex structure and promoter proofreading. Science, 333, 2011
3S1R	RNA Polymerase II Initiation Complex with a 5-nt 3'-deoxy RNA soaked with GTP 分子名称: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. 登録日 2011-05-16 公開日 2011-08-10 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Initiation complex structure and promoter proofreading. Science, 333, 2011
3S16	RNA Polymerase II Initiation Complex with an 8-nt RNA 分子名称: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. 登録日 2011-05-14 公開日 2011-08-10 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.241 Å) 主引用文献 Initiation complex structure and promoter proofreading. Science, 333, 2011
3S14	RNA Polymerase II Initiation Complex with a 6-nt RNA 分子名称: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. 登録日 2011-05-14 公開日 2011-08-10 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Initiation complex structure and promoter proofreading. Science, 333, 2011
3S1N	RNA Polymerase II Initiation Complex with a 5-nt RNA (variant 2) 分子名称: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*GP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. 登録日 2011-05-15 公開日 2011-08-10 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Initiation complex structure and promoter proofreading. Science, 333, 2011
3S2D	RNA Polymerase II Initiation Complex with a 5-nt RNA containing a 5Br-U 分子名称: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*AP*CP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. 登録日 2011-05-16 公開日 2011-08-10 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Initiation complex structure and promoter proofreading. Science, 333, 2011
3S15	RNA Polymerase II Initiation Complex with a 7-nt RNA 分子名称: DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Liu, X, Bushnell, D.A, Silva, D.A, Huang, X, Kornberg, R.D. 登録日 2011-05-14 公開日 2011-08-10 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Initiation complex structure and promoter proofreading. Science, 333, 2011

<510511512513514515516517518519520521522523524525>