PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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5GG4	Crystal structure of USP7 with RNF169 peptide 分子名称: Peptide from E3 ubiquitin-protein ligase RNF169, Ubiquitin carboxyl-terminal hydrolase 7 著者 Jiang, Y, Gong, Q. 登録日 2016-06-15 公開日 2017-03-22 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3.11 Å) 主引用文献 Dual-utility NLS drives RNF169-dependent DNA damage responses. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
7LW0	Structural and Biochemical Insight into Assembly of Molecular Motors Involved in Viral DNA Packaging 分子名称: Terminase small subunit 著者 Ortega, M.E. 登録日 2021-02-26 公開日 2022-03-02 実験手法 X-RAY DIFFRACTION (2.32 Å) 主引用文献 Structural and Biochemical Insight into Assembly of Molecular Motors Involved in Viral DNA Packaging To Be Published
7LIU	DDX3X bound to ATP analog and remodeled RNA:DNA hybrid 分子名称: 5'-R(*GP*GP*GP*CP*GP*GP*G)-D(P*CP*CP*CP*GP*CP*CP*C)-3', ATP-dependent RNA helicase DDX3X, MAGNESIUM ION, ... 著者 Enemark, E.J, Yu, S. 登録日 2021-01-27 公開日 2022-08-24 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.001 Å) 主引用文献 DDX3X bound to ATP analog and remodeled RNA:DNA hybrid To Be Published
4COS	Crystal structure of the PHD-Bromo-PWWP cassette of human PRKCBP1 分子名称: 1,4-DIETHYLENE DIOXIDE, PROTEIN KINASE C-BINDING PROTEIN 1, ZINC ION 著者 Krojer, T, Savitsky, P, Newman, J.A, Cooper, C.D.O, von Delft, F, Arrowsmith, C.H, Bountra, C, Edwards, A, Filippakopoulos, P. 登録日 2014-01-30 公開日 2014-03-05 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.67 Å) 主引用文献 Multivalent Histone and DNA Engagement by a PHD/BRD/PWWP Triple Reader Cassette Recruits ZMYND8 to K14ac-Rich Chromatin. Cell Rep, 17, 2016
8E2W	Structure of CRISPR-Associated DinG 分子名称: CasDinG 著者 Domgaard, H, Jackson, R.N. 登録日 2022-08-16 公開日 2023-06-21 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 CasDinG is a 5'-3' dsDNA and RNA/DNA helicase with three accessory domains essential for type IV CRISPR immunity. Nucleic Acids Res., 51, 2023
8DZJ	Cryo-EM structure of Acidibacillus sulfuroxidans Cas12f in complex with sgRNA and target DNA 分子名称: Non-target DNA strand, OrfB_Zn_ribbon domain-containing protein, ZINC ION, ... 著者 Liu, C, Zhao, M. 登録日 2022-08-07 公開日 2023-07-12 最終更新日 2023-11-08 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 An engineered hypercompact CRISPR-Cas12f system with boosted gene-editing activity. Nat.Chem.Biol., 19, 2023
4CEH	Crystal structure of AddAB with a forked DNA substrate 分子名称: ATP-DEPENDENT HELICASE/DEOXYRIBONUCLEASE SUBUNIT B, ATP-DEPENDENT HELICASE/NUCLEASE SUBUNIT A, DNA, ... 著者 Krajewski, W.W, Wilkinson, M, Fu, X, Cronin, N.B, Wigley, D. 登録日 2013-11-11 公開日 2014-03-12 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.24 Å) 主引用文献 Structural Basis for Translocation by Addab Helicase-Nuclease and its Arrest at Chi Sites. Nature, 508, 2014
4CEI	Crystal structure of ADPNP-bound AddAB with a forked DNA substrate 分子名称: ATP-DEPENDENT HELICASE/DEOXYRIBONUCLEASE SUBUNIT B, ATP-DEPENDENT HELICASE/NUCLEASE SUBUNIT A, DNA, ... 著者 Krajewski, W.W, Wilkinson, M, Fu, X, Cronin, N.B, Wigley, D. 登録日 2013-11-11 公開日 2014-03-12 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural Basis for Translocation by Addab Helicase-Nuclease and its Arrest at Chi Sites. Nature, 508, 2014
1BCO	BACTERIOPHAGE MU TRANSPOSASE CORE DOMAIN 分子名称: BACTERIOPHAGE MU TRANSPOSASE 著者 Rice, P.A, Mizuuchi, K. 登録日 1995-05-26 公開日 1995-10-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structure of the bacteriophage Mu transposase core: a common structural motif for DNA transposition and retroviral integration. Cell(Cambridge,Mass.), 82, 1995
4J2N	Crystal Structure of mycobacteriophage Pukovnik Xis 分子名称: Gp37, SULFATE ION 著者 Homa, N.J, Amrich, C.G, Heroux, A, VanDemark, A.P. 登録日 2013-02-04 公開日 2013-10-23 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.348 Å) 主引用文献 The Structure of Xis Reveals the Basis for Filament Formation and Insight into DNA Bending within a Mycobacteriophage Intasome. J.Mol.Biol., 426, 2014
1K8P	Structure of the Human G-quadruplex reveals a novel topology 分子名称: 5'-D(*(BRU)P*AP*GP*GP*GP*(BRU)P*TP*AP*GP*GP*GP*T)-3', POTASSIUM ION, SODIUM ION 著者 Parkinson, G.N, Lee, M.P.H, Neidle, S. 登録日 2001-10-25 公開日 2002-05-31 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal structure of parallel quadruplexes from human telomeric DNA. Nature, 417, 2002
1BCM	BACTERIOPHAGE MU TRANSPOSASE CORE DOMAIN WITH 2 MONOMERS PER ASYMMETRIC UNIT 分子名称: BACTERIOPHAGE MU TRANSPOSASE 著者 Rice, P.A, Mizuuchi, K. 登録日 1995-05-26 公開日 1995-10-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structure of the bacteriophage Mu transposase core: a common structural motif for DNA transposition and retroviral integration. Cell(Cambridge,Mass.), 82, 1995
6K5X	Crystal Structure of the DNA-Binding Domain of GapR 分子名称: SULFATE ION, UPF0335 protein CCNA_03428 著者 Xia, B, Huang, Q. 登録日 2019-05-31 公開日 2020-06-03 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.086 Å) 主引用文献 Crystal Structure of the DNA-Binding Domain of GapR To Be Published
3QSI	Nickel binding domain of NikR from Helicobacter pylori disclosing partial metal occupancy 分子名称: NICKEL (II) ION, NikR nickel-responsive regulator, SULFATE ION 著者 Gonzalez, J.M, Pozharski, E. 登録日 2011-02-21 公開日 2012-04-04 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (3.08 Å) 主引用文献 Ni(II) coordination to mixed sites modulates DNA binding of HpNikR via a long-range effect. Proc.Natl.Acad.Sci.USA, 109, 2012
1ZLJ	Crystal Structure of the Mycobacterium tuberculosis Hypoxic Response Regulator DosR C-terminal Domain 分子名称: Dormancy Survival Regulator 著者 Wisedchaisri, G, Wu, M, Rice, A.E, Roberts, D.M, Sherman, D.R, Hol, W.G.J. 登録日 2005-05-06 公開日 2006-01-31 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structures of Mycobacterium tuberculosis DosR and DosR-DNA complex involved in gene activation during adaptation to hypoxic latency. J.Mol.Biol., 354, 2005
1TFR	RNASE H FROM BACTERIOPHAGE T4 分子名称: MAGNESIUM ION, T4 RNASE H 著者 Mueser, T.C, Nossal, N.G, Hyde, C.C. 登録日 1996-04-27 公開日 1996-11-08 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.06 Å) 主引用文献 Structure of bacteriophage T4 RNase H, a 5' to 3' RNA-DNA and DNA-DNA exonuclease with sequence similarity to the RAD2 family of eukaryotic proteins. Cell(Cambridge,Mass.), 85, 1996
3U44	Crystal structure of AddAB-DNA complex 分子名称: ATP-dependent helicase/deoxyribonuclease subunit B, ATP-dependent helicase/nuclease subunit A, DNA (36-MER), ... 著者 Saikrishnan, K, Krajewski, W, Wigley, D. 登録日 2011-10-07 公開日 2012-03-21 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.201 Å) 主引用文献 Insights into Chi recognition from the structure of an AddAB-type helicase-nuclease complex. Embo J., 31, 2012
1WOC	Crystal structure of PriB 分子名称: Primosomal replication protein n 著者 Shioi, S, Ose, T, Maenaka, K, Abe, Y, Kohda, D, Katayama, T, Ueda, T. 登録日 2004-08-13 公開日 2005-01-25 最終更新日 2012-12-05 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of a biologically functional form of PriB from Escherichia coli reveals a potential single-stranded DNA-binding site Biochem.Biophys.Res.Commun., 326, 2005
3H25	Crystal structure of the catalytic domain of primase Repb' in complex with initiator DNA 分子名称: Replication protein B, SINGLE STRANDED INITIATOR DNA (SSIA) 著者 Geibel, S, Banchenko, S, Engel, M, Lanka, E, Saenger, W. 登録日 2009-04-14 公開日 2009-04-28 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structure and function of primase RepB' encoded by broad-host-range plasmid RSF1010 that replicates exclusively in leading-strand mode Proc.Natl.Acad.Sci.USA, 106, 2009
1WGX	Solution structure of RSGI RUH-022, a myb DNA-binding domain in human cDNA 分子名称: KIAA1903 protein 著者 Doi-Katayama, Y, Hirota, H, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2004-05-28 公開日 2004-11-28 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure of RSGI RUH-022, a myb DNA-binding domain in human cDNA To be Published
6IFC	Crystal structure of VapBC from Salmonella typhimurium 分子名称: Antitoxin VapB, CALCIUM ION, tRNA(fMet)-specific endonuclease VapC 著者 Park, D.W, Lee, B.J. 登録日 2018-09-19 公開日 2020-01-29 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.99 Å) 主引用文献 Crystal structure of proteolyzed VapBC and DNA-bound VapBC from Salmonella enterica Typhimurium LT2 and VapC as a putative Ca2+-dependent ribonuclease. Faseb J., 34, 2020
1EX4	HIV-1 INTEGRASE CATALYTIC CORE AND C-TERMINAL DOMAIN 分子名称: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, INTEGRASE 著者 Chen, J.C.-H, Krucinski, J, Miercke, L.J.W, Finer-Moore, J.S, Tang, A.H, Leavitt, A.D, Stroud, R.M. 登録日 2000-04-28 公開日 2000-06-07 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal structure of the HIV-1 integrase catalytic core and C-terminal domains: a model for viral DNA binding. Proc.Natl.Acad.Sci.USA, 97, 2000
3HXM	Structure of an argonaute complexed with guide DNA and target RNA duplex containing two mismatches. 分子名称: Argonaute, DNA (5'-D(P*TP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*TP*AP*GP*T)-3'), MAGNESIUM ION, ... 著者 Wang, Y, Li, H, Sheng, G, Patel, D.J. 登録日 2009-06-21 公開日 2009-10-06 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes. Nature, 461, 2009
2ZUG	Crystal structure of WSSV ICP11 分子名称: ORF115 (WSSV285) (Wsv230) 著者 Wang, A.H.-J, Wang, H.-C, Ko, T.-P, Lo, C.-F. 登録日 2008-10-17 公開日 2008-12-09 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.72 Å) 主引用文献 White spot syndrome virus protein ICP11: A histone-binding DNA mimic that disrupts nucleosome assembly Proc.Natl.Acad.Sci.USA, 105, 2008
4Q3J	Crystal structure of NFkB-p65-degrading zinc protease family protein 分子名称: MAGNESIUM ION, NFkB-p65-degrading zinc protease family protein, ZINC ION 著者 Sousa, M.C, Turco, M.M. 登録日 2014-04-11 公開日 2014-07-30 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.862 Å) 主引用文献 The Structure and Specificity of the Type III Secretion System Effector NleC Suggest a DNA Mimicry Mechanism of Substrate Recognition. Biochemistry, 53, 2014

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