PDB: 46984 件ウェブページステータス検索Chemie searchBIRD

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4J8V	X-ray structure of NCP145 with bound chlorido(eta-6-p-cymene)(N-phenyl-2-pyridinecarbothioamide)ruthenium(II) 分子名称: DNA (145-MER), Histone H2A, Histone H2B 1.1, ... 著者 Adhireksan, Z, Davey, C.A. 登録日 2013-02-15 公開日 2013-05-08 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.58 Å) 主引用文献 Novel metal(II) arene 2-pyridinecarbothioamides: a rationale to orally active organometallic anticancer agents CHEM SCI, 4, 2013
7RQC	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 16S Ribosomal RNA, 23S Ribosomal RNA, ... 著者 Syroegin, E.A, Flemmich, L, Klepacki, D, Vazquez-Laslop, N, Micura, R, Polikanov, Y.S. 登録日 2021-08-06 公開日 2022-01-26 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structural basis for the context-specific action of the classic peptidyl transferase inhibitor chloramphenicol. Nat.Struct.Mol.Biol., 29, 2022
7RQB	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 16S Ribosomal RNA, 23S Ribosomal RNA, ... 著者 Syroegin, E.A, Flemmich, L, Klepacki, D, Vazquez-Laslop, N, Micura, R, Polikanov, Y.S. 登録日 2021-08-06 公開日 2022-01-26 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Structural basis for the context-specific action of the classic peptidyl transferase inhibitor chloramphenicol. Nat.Struct.Mol.Biol., 29, 2022
4J8U	X-ray structure of NCP145 with chlorido(eta-6-p-cymene)(N-phenyl-2-pyridinecarbothioamide)osmium(II) 分子名称: DNA, Histone H2A type 1, Histone H2B 1.1, ... 著者 Adhireksan, Z, Davey, C.A. 登録日 2013-02-15 公開日 2013-04-17 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.38 Å) 主引用文献 Novel metal(II) arene 2-pyridinecarbothioamides: a rationale to orally active organometallic anticancer agents CHEM SCI, 4, 2013
7Q5B	Cryo-EM structure of Ty3 retrotransposon targeting a TFIIIB-bound tRNA gene 分子名称: DNA (19-MER), DNA (31-MER), DNA (34-MER), ... 著者 Abascal-Palacios, G, Jochem, L, Pla-Prats, C, Beuron, F, Vannini, A. 登録日 2021-11-03 公開日 2022-01-26 実験手法 ELECTRON MICROSCOPY (3.98 Å) 主引用文献 Structural basis of Ty3 retrotransposon integration at RNA Polymerase III-transcribed genes. Nat Commun, 12, 2021
4JI3	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus 分子名称: 16S rRNA, MAGNESIUM ION, RIBOSOMAL PROTEIN S10, ... 著者 Demirci, H, Wang, L, Murphy, F.V, Murphy, E.L, Carr, J, Blanchard, S, Jogl, G, Dahlberg, A.E, Gregory, S.T. 登録日 2013-03-05 公開日 2013-11-06 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.35 Å) 主引用文献 The central role of protein S12 in organizing the structure of the decoding site of the ribosome. Rna, 19, 2013
4KVB	Thermus thermophilus HB27 30S ribosomal subunit lacking ribosomal protein S17 分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Murphy, E.L, Jogl, G. 登録日 2013-05-22 公開日 2014-06-04 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (4.198 Å) 主引用文献 Structural robustness of the ribosome inferred from the X-ray crystal structure of a 30S ribosomal subunit lacking ribosomal protein S17 To be Published
7Q4P	U2 snRNP after ATP-dependent remodelling 分子名称: PHD finger-like domain-containing protein 5A, Splicing factor 3A subunit 2, Splicing factor 3A subunit 3, ... 著者 Tholen, J, Galej, W.P. 登録日 2021-11-01 公開日 2022-03-30 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (2.15 Å) 主引用文献 Structural basis of branch site recognition by the human spliceosome. Science, 375, 2022
7Q3L	Human 17S U2 snRNP 5' domain 分子名称: HIV Tat-specific factor 1, PHD finger-like domain-containing protein 5A, Probable ATP-dependent RNA helicase DDX46, ... 著者 Tholen, J, Galej, W.P. 登録日 2021-10-28 公開日 2022-03-30 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (2.21 Å) 主引用文献 Structural basis of branch site recognition by the human spliceosome. Science, 375, 2022
1VWA	STREPTAVIDIN-FSHPQNT 分子名称: PEPTIDE LIGAND CONTAINING HPQ, STREPTAVIDIN 著者 Katz, B.A, Cass, R.T. 登録日 1997-03-03 公開日 1998-03-18 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 In crystals of complexes of streptavidin with peptide ligands containing the HPQ sequence the pKa of the peptide histidine is less than 3.0. J.Biol.Chem., 272, 1997
7A5F	Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs 分子名称: 12S rRNA, 16S rRNA, 28S ribosomal protein S10, ... 著者 Desai, N, Yang, H, Chandrasekaran, V, Kazi, R, Minczuk, M, Ramakrishnan, V. 登録日 2020-08-21 公開日 2020-12-23 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 Elongational stalling activates mitoribosome-associated quality control. Science, 370, 2020
7R5K	Human nuclear pore complex (constricted) 分子名称: Aladin, E3 SUMO-protein ligase RanBP2, Nuclear pore complex protein Nup107, ... 著者 Mosalaganti, S, Obarska-Kosinska, A, Siggel, M, Taniguchi, R, Turonova, B, Zimmerli, C.E, Buczak, K, Schmidt, F.H, Margiotta, E, Mackmull, M.T, Hagen, W.J.H, Hummer, G, Kosinski, J, Beck, M. 登録日 2022-02-10 公開日 2022-06-22 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (12 Å) 主引用文献 AI-based structure prediction empowers integrative structural analysis of human nuclear pores. Science, 376, 2022
7R5J	Human nuclear pore complex (dilated) 分子名称: Aladin, E3 SUMO-protein ligase RanBP2, Nuclear pore complex protein Nup107, ... 著者 Mosalaganti, S, Obarska-Kosinska, A, Siggel, M, Taniguchi, R, Turonova, B, Zimmerli, C.E, Buczak, K, Schmidt, F.H, Margiotta, E, Mackmull, M.T, Hagen, W.J.H, Hummer, G, Kosinski, J, Beck, M. 登録日 2022-02-10 公開日 2022-09-21 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (50 Å) 主引用文献 AI-based structure prediction empowers integrative structural analysis of human nuclear pores Science, 376, 2022
7PIA	70S ribosome with A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. 登録日 2021-08-19 公開日 2022-05-25 最終更新日 2022-10-19 実験手法 ELECTRON MICROSCOPY (13.6 Å) 主引用文献 Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PIQ	70S ribosome with A- and P-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. 登録日 2021-08-23 公開日 2022-05-25 最終更新日 2022-10-19 実験手法 ELECTRON MICROSCOPY (9.7 Å) 主引用文献 Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7A23	Plant mitochondrial respiratory complex I 分子名称: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, 13kDa, 15kDa, ... 著者 Soufari, H, Waltz, F, Hashem, Y. 登録日 2020-08-15 公開日 2020-10-28 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Specific features and assembly of the plant mitochondrial complex I revealed by cryo-EM. Nat Commun, 11, 2020
4LF7	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus 分子名称: 16S rRNA, MAGNESIUM ION, PAROMOMYCIN, ... 著者 Demirci, H, Belardinelli, R, Carr, J, Murphy IV, F, Jogl, G, Dahlberg, A.E, Gregory, S.T. 登録日 2013-06-26 公開日 2014-07-02 実験手法 X-RAY DIFFRACTION (3.1484 Å) 主引用文献 Crystal Structure of 30S ribosomal subunit from Thermus thermophilus To be Published, 2013
7ACR	Structure of post-translocated trans-translation complex on E. coli stalled ribosome. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Guyomar, C, D'Urso, G, Chat, S, Giudice, E, Gillet, R. 登録日 2020-09-11 公開日 2021-08-18 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.44 Å) 主引用文献 Structures of tmRNA and SmpB as they transit through the ribosome. Nat Commun, 12, 2021
7R4X	Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map 分子名称: 18S ribosomal RNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ... 著者 Pellegrino, S, Dent, K.C, Spikes, T, Warren, A.J. 登録日 2022-02-09 公開日 2023-02-22 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.15 Å) 主引用文献 Cryo-EM reconstruction of the human 40S ribosomal subunit at 2.15 angstrom resolution. Nucleic Acids Res., 51, 2023
7AC7	Structure of accomodated trans-translation complex on E. Coli stalled ribosome. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Guyomar, C, D'Urso, G, Chat, S, Giudice, E, Gillet, R. 登録日 2020-09-10 公開日 2021-08-18 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.08 Å) 主引用文献 Structures of tmRNA and SmpB as they transit through the ribosome. Nat Commun, 12, 2021
4JI1	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus 分子名称: 16S rRNA, MAGNESIUM ION, RIBOSOMAL PROTEIN S10, ... 著者 Demirci, H, Wang, L, Murphy IV, F, Murphy, E, Carr, J, Blanchard, S, Jogl, G, Dahlberg, A.E, Gregory, S.T. 登録日 2013-03-05 公開日 2013-11-06 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (3.144 Å) 主引用文献 The central role of protein S12 in organizing the structure of the decoding site of the ribosome. Rna, 19, 2013
5VCP	Crystal structure of a peptide deformylase from Burkholderia xenovorans in complex with actinonin 分子名称: ACTINONIN, FE (II) ION, MAGNESIUM ION, ... 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2017-03-31 公開日 2017-05-03 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Crystal structure of a peptide deformylase from Burkholderia xenovorans in complex with actinonin To be Published
6YST	Structure of the P+9 ArfB-ribosome complex with P/E hybrid tRNA in the post-hydrolysis state 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Chan, K.-H, Petrychenko, V, Mueller, C, Maracci, C, Holtkamp, W, Wilson, D.N, Fischer, N, Rodnina, M.V. 登録日 2020-04-23 公開日 2020-08-19 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Mechanism of ribosome rescue by alternative ribosome-rescue factor B. Nat Commun, 11, 2020
7BEG	Structures of class I bacterial transcription complexes 分子名称: Class I pacrA promoter non-template DNA, Class I pacrA promoter template DNA, DNA-directed RNA polymerase subunit alpha, ... 著者 Ye, F.Z, Hao, M, Zhang, X.D. 登録日 2020-12-23 公開日 2021-12-01 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Structures of Class I and Class II Transcription Complexes Reveal the Molecular Basis of RamA-Dependent Transcription Activation. Adv Sci, 9, 2022
4LFA	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus 分子名称: 16S rRNA, HYGROMYCIN B, MAGNESIUM ION, ... 著者 Demirci, H, Belardinelli, R, Carr, J, Murphy IV, F, Jogl, G, Dahlberg, A.E, Gregory, S.T. 登録日 2013-06-26 公開日 2014-07-02 実験手法 X-RAY DIFFRACTION (3.6461 Å) 主引用文献 Crystal Structure of 30S ribosomal subunit from Thermus thermophilus to be published, 2013

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