PDB: 46984 件ウェブページステータス検索Chemie searchBIRD

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1VWL	STREPTAVIDIN-CYCLO-[5-S-VALERAMIDE-HPQGPPC]K-NH2, PH 3.5, I222 COMPLEX 分子名称: PENTANOIC ACID, PEPTIDE LIGAND CONTAINING HPQ, STREPTAVIDIN 著者 Katz, B.A, Cass, R.T. 登録日 1997-03-03 公開日 1998-03-18 最終更新日 2024-06-05 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 In crystals of complexes of streptavidin with peptide ligands containing the HPQ sequence the pKa of the peptide histidine is less than 3.0. J.Biol.Chem., 272, 1997
7PHA	70S ribosome with EF-Tu-tRNA and P-site tRNA in chloramphenicol-treated Mycoplasma pneumoniae cells 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. 登録日 2021-08-16 公開日 2022-05-25 最終更新日 2022-10-19 実験手法 ELECTRON MICROSCOPY (8.5 Å) 主引用文献 Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PIT	70S ribosome with EF-G, A/P- and P/E-site tRNAs in pseudouridimycin-treated Mycoplasma pneumoniae cells 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. 登録日 2021-08-23 公開日 2022-05-25 最終更新日 2022-11-23 実験手法 ELECTRON MICROSCOPY (5.7 Å) 主引用文献 Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PI9	70S ribosome with EF-Tu-tRNA and P-site tRNA in spectinomycin-treated Mycoplasma pneumoniae cells 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. 登録日 2021-08-19 公開日 2022-05-25 最終更新日 2022-10-19 実験手法 ELECTRON MICROSCOPY (6.3 Å) 主引用文献 Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PHC	70S ribosome with A*- and P/E-site tRNAs in chloramphenicol-treated Mycoplasma pneumoniae cells 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. 登録日 2021-08-16 公開日 2022-05-25 最終更新日 2022-10-19 実験手法 ELECTRON MICROSCOPY (9.9 Å) 主引用文献 Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PIB	70S ribosome with EF-G, A/P- and P/E-site tRNAs in spectinomycin-treated Mycoplasma pneumoniae cells 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. 登録日 2021-08-19 公開日 2022-05-25 最終更新日 2022-10-19 実験手法 ELECTRON MICROSCOPY (4.7 Å) 主引用文献 Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7PWF	Cryo-EM structure of small subunit of Giardia lamblia ribosome at 2.9 A resolution 分子名称: 40S ribosomal protein S21, 40S ribosomal protein S25, 40S ribosomal protein S26, ... 著者 Hiregange, D.G, Rivalta, A, Bose, T, Breiner-Goldstein, E, Samiya, S, Cimicata, G, Kulakova, L, Zimmerman, E, Bashan, A, Herzberg, O, Yonath, A. 登録日 2021-10-06 公開日 2022-05-25 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.85 Å) 主引用文献 Cryo-EM structure of the ancient eukaryotic ribosome from the human parasite Giardia lamblia. Nucleic Acids Res., 50, 2022
7OHB	TBP-nucleosome complex 分子名称: DNA (145-MER), Histone H2A, Histone H2B 1.1, ... 著者 Wang, H, Cramer, P. 登録日 2021-05-10 公開日 2021-07-28 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structures and implications of TBP-nucleosome complexes. Proc.Natl.Acad.Sci.USA, 118, 2021
5TS2	Crystal structure of a phosphopantetheine adenylyltransferase (CoaD, PPAT) from Pseudomonas aeruginosa bound to dephospho coenzyme A 分子名称: CALCIUM ION, CHLORIDE ION, DEPHOSPHO COENZYME A, ... 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2016-10-27 公開日 2016-11-09 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of a phosphopantetheine adenylyltransferase (CoaD, PPAT) from Pseudomonas aeruginosa bound to dephospho coenzyme A To Be Published
7PIP	70S ribosome with EF-Tu-tRNA and P-site tRNA in pseudouridimycin-treated Mycoplasma pneumoniae cells 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Xue, L, Lenz, S, Rappsilber, J, Mahamid, J. 登録日 2021-08-23 公開日 2022-05-25 最終更新日 2022-10-19 実験手法 ELECTRON MICROSCOPY (9.3 Å) 主引用文献 Visualizing translation dynamics at atomic detail inside a bacterial cell. Nature, 610, 2022
7OHC	Cryo-EM structure of nucleosome core particle composed of the Widom 601 DNA sequence 分子名称: DNA (145-MER), Histone H2A, Histone H2B 1.1, ... 著者 Wang, H, Cramer, P. 登録日 2021-05-10 公開日 2021-07-28 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (2.5 Å) 主引用文献 Structures and implications of TBP-nucleosome complexes. Proc.Natl.Acad.Sci.USA, 118, 2021
7O19	Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan 分子名称: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ... 著者 van der Stel, A.X, Gordon, E.R, Sengupta, A, Martinez, A.K, Klepacki, D, Perry, T.N, Herrero del Valle, A, Vazquez-Laslop, N, Sachs, M.S, Cruz-Vera, L.R, Innis, C.A. 登録日 2021-03-29 公開日 2021-09-01 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structural basis for the tryptophan sensitivity of TnaC-mediated ribosome stalling. Nat Commun, 12, 2021
7O1A	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan 分子名称: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ... 著者 van der Stel, A.X, Gordon, E.R, Sengupta, A, Martinez, A.K, Klepacki, D, Perry, T.N, Herrero del Valle, A, Vazquez-Laslop, N, Sachs, M.S, Cruz-Vera, L.R, Innis, C.A. 登録日 2021-03-29 公開日 2021-09-01 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.4 Å) 主引用文献 Structural basis for the tryptophan sensitivity of TnaC-mediated ribosome stalling. Nat Commun, 12, 2021
7O1C	Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan 分子名称: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ... 著者 van der Stel, A.X, Gordon, E.R, Sengupta, A, Martinez, A.K, Klepacki, D, Perry, T.N, Herrero del Valle, A, Vazquez-Laslop, N, Sachs, M.S, Cruz-Vera, L.R, Innis, C.A. 登録日 2021-03-29 公開日 2021-09-01 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.6 Å) 主引用文献 Structural basis for the tryptophan sensitivity of TnaC-mediated ribosome stalling. Nat Commun, 12, 2021
6YAN	Mammalian 48S late-stage translation initiation complex with histone 4 mRNA 分子名称: 18S ribosomal RNA, 40S ribosomal protein S12, 40S ribosomal protein S21, ... 著者 Bochler, A, Simonetti, A, Guca, E, Hashem, Y. 登録日 2020-03-12 公開日 2020-04-08 最終更新日 2020-04-22 実験手法 ELECTRON MICROSCOPY (3.48 Å) 主引用文献 Structural Insights into the Mammalian Late-Stage Initiation Complexes. Cell Rep, 31, 2020
7OIE	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5B 分子名称: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ... 著者 Cheng, J, Berninghausen, O, Beckmann, R. 登録日 2021-05-11 公開日 2021-09-15 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 A distinct assembly pathway of the human 39S late pre-mitoribosome. Nat Commun, 12, 2021
7OID	Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 5A 分子名称: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ... 著者 Cheng, J, Berninghausen, O, Beckmann, R. 登録日 2021-05-11 公開日 2021-09-15 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 A distinct assembly pathway of the human 39S late pre-mitoribosome. Nat Commun, 12, 2021
7OHV	Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C 分子名称: 25S rRNA, 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase, 5.8S rRNA, ... 著者 Milkereit, P, Poell, G. 登録日 2021-05-11 公開日 2021-11-03 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors. Plos One, 16, 2021
7OHR	Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae 分子名称: 25S rRNA, 25S rRNA (cytosine(2870)-C(5))-methyltransferase, 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase, ... 著者 Milkereit, P, Poell, G. 登録日 2021-05-11 公開日 2021-11-10 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (4.72 Å) 主引用文献 Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors. Plos One, 16, 2021
6YAL	Mammalian 48S late-stage initiation complex with beta-globin mRNA 分子名称: 18S ribosomal RNA, 40S Ribosomal protein uS3, 40S Ribosomal protein uS7, ... 著者 Bochler, A, Simonetti, A, Guca, E, Hashem, Y. 登録日 2020-03-12 公開日 2020-04-08 最終更新日 2020-04-22 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural Insights into the Mammalian Late-Stage Initiation Complexes. Cell Rep, 31, 2020
5UHR	Crystal structure of (Cit)LANFLV heptapeptide segment from islet amyloid polypeptide (IAPP) incorporated into a macrocyclic beta-sheet template 分子名称: CHLORIDE ION, ORN-CIR-LEU-ALA-ASN-PHE-LEU-VAL-ORN-ILE-LYS-HAO-LYS-A8E 著者 Wang, Y, Kreutzer, A.G, Nowick, J.S. 登録日 2017-01-11 公開日 2017-07-12 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.798 Å) 主引用文献 A Tetramer Derived from Islet Amyloid Polypeptide. J. Org. Chem., 82, 2017
7OIG	CspA-27 cotranslational folding intermediate 3 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Agirrezabala, X, Samatova, E, Macher, M, Liutkute, M, Gil-Carton, D, Novacek, J, Valle, M, Rodnina, M.V. 登録日 2021-05-11 公開日 2022-01-19 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 A switch from alpha-helical to beta-strand conformation during co-translational protein folding. Embo J., 41, 2022
7O5B	Cryo-EM structure of a Bacillus subtilis MifM-stalled ribosome-nascent chain complex with (p)ppGpp-SRP bound 分子名称: 16S rRNA (1533-MER), 23S rRNA (2887-MER), 30S ribosomal protein S10, ... 著者 Kratzat, H, Czech, L, Berninghausen, O, Bange, G, Beckmann, R. 登録日 2021-04-08 公開日 2022-02-02 最終更新日 2022-03-09 実験手法 ELECTRON MICROSCOPY (3.33 Å) 主引用文献 Inhibition of SRP-dependent protein secretion by the bacterial alarmone (p)ppGpp. Nat Commun, 13, 2022
7OGU	Plant peptide hormone receptor complex H1C9S1 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Roman, A.O, Jimenez-Sandoval, P, Santiago, J. 登録日 2021-05-07 公開日 2022-02-16 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.872 Å) 主引用文献 HSL1 and BAM1/2 impact epidermal cell development by sensing distinct signaling peptides. Nat Commun, 13, 2022
7PKQ	Small subunit of the Chlamydomonas reinhardtii mitoribosome 分子名称: 30S ribosomal protein S9, chloroplastic, Mitochondrial ribosomal protein S13, ... 著者 Waltz, F, Soufari, H, Hashem, Y. 登録日 2021-08-26 公開日 2023-06-14 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 The Chlamydomonas mitochondrial ribosome: how to build a ribosome from RNA fragments To Be Published

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