PDB: 46200 件ウェブページステータス検索Chemie searchBIRD

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8A5D	Structure of Arp4-Ies4-N-actin-Arp8-Ino80HSA subcomplex (A-module) of Chaetomium thermophilum INO80 分子名称: Actin, Actin related protein 4 (Arp4), Actin-related protein 8, ... 著者 Kunert, F, Metzner, F.J, Eustermann, S, Jung, J, Woike, S, Schall, K, Kostrewa, D, Hopfner, K.P. 登録日 2022-06-14 公開日 2022-12-28 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structural mechanism of extranucleosomal DNA readout by the INO80 complex. Sci Adv, 8, 2022
8XAY	Cryo-EM structure of an anti-phage defense complex bound to ATPrS and DNA 分子名称: ADENOSINE-5'-DIPHOSPHATE, ATP-binding protein, DUF4297, ... 著者 An, Q, Deng, Z. 登録日 2023-12-05 公開日 2024-06-05 最終更新日 2024-08-14 実験手法 ELECTRON MICROSCOPY (2.81 Å) 主引用文献 Molecular and structural basis of an ATPase-nuclease dual-enzyme anti-phage defense complex. Cell Res., 34, 2024
7UHE	Taf14 ET domain in complex with C-terminal tail of Taf2 分子名称: C-terminal tail of Transcription initiation factor TFIID subunit 2, Transcription initiation factor TFIID subunit 14 著者 Klein, B.J, Kutateladze, T.G. 登録日 2022-03-26 公開日 2022-08-17 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.66 Å) 主引用文献 Taf2 mediates DNA binding of Taf14. Nat Commun, 13, 2022
3N4Q	Human cytomegalovirus terminase nuclease domain, Mn soaked 分子名称: MAGNESIUM ION, MANGANESE (II) ION, TERMINASE SUBUNIT UL89 PROTEIN 著者 Nadal, M, Mas, P.J, Blanco, A.G, Arnan, C, Sola, M, Hart, D.J, Coll, M. 登録日 2010-05-22 公開日 2010-10-13 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structure and inhibition of herpesvirus DNA packaging terminase nuclease domain. Proc.Natl.Acad.Sci.USA, 107, 2010
3EBE	Crystal structure of xenopus laevis replication initiation factor MCM10 internal domain 分子名称: Protein MCM10 homolog, ZINC ION 著者 Warren, E.M, Eichman, B.F. 登録日 2008-08-27 公開日 2008-12-09 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural basis for DNA binding by replication initiator mcm10. Structure, 16, 2008
3N4P	Human cytomegalovirus terminase nuclease domain 分子名称: MAGNESIUM ION, Terminase subunit UL89 protein 著者 Nadal, M, Mas, P.J, Blanco, A.G, Arnan, C, Sola, M, Hart, D.J, Coll, M. 登録日 2010-05-22 公開日 2010-10-06 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structure and inhibition of herpesvirus DNA packaging terminase nuclease domain. Proc.Natl.Acad.Sci.USA, 107, 2010
2OBZ	Crystal structure of the The brominated Z-DNA duplex d(CGCG[BrU]G) 分子名称: 5'-D(*CP*GP*CP*GP*(BRU)P*G)-3' 著者 Schiltz, M, Sanishvili, R. 登録日 2006-12-20 公開日 2007-12-25 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 Polarisation-dependence of anomalous scattering in brominated DNA and RNA molecules, and importance of crystal orientation in SAD and MAD phasing To be Published
2Y7C	Atomic model of the Ocr-bound methylase complex from the Type I restriction-modification enzyme EcoKI (M2S1). Based on fitting into EM map 1534. 分子名称: GENE 0.3 PROTEIN, TYPE I RESTRICTION ENZYME ECOKI M PROTEIN, TYPE-1 RESTRICTION ENZYME ECOKI SPECIFICITY PROTEIN 著者 Kennaway, C.K, Obarska-Kosinska, A, White, J.H, Tuszynska, I, Cooper, L.P, Bujnicki, J.M, Trinick, J, Dryden, D.T.F. 登録日 2011-01-31 公開日 2011-02-09 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (18 Å) 主引用文献 The Structure of M.Ecoki Type I DNA Methyltransferase with a DNA Mimic Antirestriction Protein. Nucleic Acids Res., 37, 2009
5TGE	Thermus Phage P74-26 Large Terminase Nuclease Domain 分子名称: Phage terminase large subunit 著者 Hilbert, B.J, Hayes, J.A, Stone, N.P, Kelch, B.A. 登録日 2016-09-27 公開日 2017-01-25 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 The large terminase DNA packaging motor grips DNA with its ATPase domain for cleavage by the flexible nuclease domain. Nucleic Acids Res., 45, 2017
6OAA	Cdc48-Npl4 complex processing poly-ubiquitinated substrate in the presence of ADP-BeFx, state 1 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Cell division control protein 48, ... 著者 Twomey, E.C, Ji, Z, Wales, T.E, Bodnar, N.O, Engen, J.R, Rapoport, T.A. 登録日 2019-03-15 公開日 2019-07-03 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (4.1 Å) 主引用文献 Substrate processing by the Cdc48 ATPase complex is initiated by ubiquitin unfolding. Science, 365, 2019
6OA9	Cdc48-Npl4 complex processing poly-ubiquitinated substrate in the presence of ATP 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 48, ... 著者 Twomey, E.C, Ji, Z, Wales, T.E, Bodnar, N.O, Engen, J.R, Rapoport, T.A. 登録日 2019-03-15 公開日 2019-07-03 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Substrate processing by the Cdc48 ATPase complex is initiated by ubiquitin unfolding. Science, 365, 2019
3W2Y	Crystal structure of DNA uridine endonuclease Mth212 mutant W205S 分子名称: DI(HYDROXYETHYL)ETHER, Exodeoxyribonuclease, FORMIC ACID, ... 著者 Tabata, N, Shida, T, Arai, R. 登録日 2012-12-06 公開日 2013-12-11 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure of DNA uridine endonuclease Mth212 To be Published
3HA8	THE COMPLEX STRUCTURE OF THE MAP KINASE P38/Compound 14b 分子名称: Mitogen-activated protein kinase 14, N~2~-{4-[6-(3,4-dihydroquinolin-1(2H)-ylcarbonyl)-1H-benzimidazol-1-yl]-6-ethoxy-1,3,5-triazin-2-yl}-3-(2,2-dimethyl-4H-1,3-benzodioxin-6-yl)-N-methyl-L-alaninamide 著者 Zhao, B, Clark, M.A. 登録日 2009-05-01 公開日 2009-08-04 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.48 Å) 主引用文献 Design, synthesis and selection of DNA-encoded small-molecule libraries. Nat.Chem.Biol., 5, 2009
3B2N	Crystal structure of DNA-binding response regulator, LuxR family, from Staphylococcus aureus 分子名称: SODIUM ION, Uncharacterized protein Q99UF4 著者 Malashkevich, V.N, Toro, R, Meyer, A.J, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC) 登録日 2007-10-18 公開日 2007-10-30 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 Crystal structure of DNA-binding response regulator, LuxR family, from Staphylococcus aureus. To be Published
2PQA	Crystal Structure of Full-length Human RPA 14/32 Heterodimer 分子名称: Replication protein A 14 kDa subunit, Replication protein A 32 kDa subunit 著者 Deng, X, Borgstahl, G.E. 登録日 2007-05-01 公開日 2007-11-13 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure of the full-length human RPA14/32 complex gives insights into the mechanism of DNA binding and complex formation. J.Mol.Biol., 374, 2007
2MJG	Solution Structure of C-terminal AbrB 分子名称: Transition state regulatory protein AbrB 著者 Olson, A.L, Tucker, A.T, Thompson, R.J, Cavanagh, J. 登録日 2014-01-08 公開日 2014-11-26 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structure and DNA-binding traits of the transition state regulator AbrB. Structure, 22, 2014
3U08	Crystal structure of DB1963-D(CGCGAATTCGCG)2 complex at 1.25 A resolution 分子名称: 4'-(5-carbamimidoyl-1H-benzimidazol-2-yl)biphenyl-4-carboxamide, 5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3', MAGNESIUM ION 著者 Wei, D.G, Neidle, S. 登録日 2011-09-28 公開日 2012-09-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 Small-molecule binding to the DNA minor groove is mediated by a conserved water cluster. J.Am.Chem.Soc., 135, 2013
4O66	Crystal Structure of SMARCAL1 HARP substrate recognition domain 分子名称: SODIUM ION, SULFATE ION, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 著者 Mason, A.C, Eichman, B.F. 登録日 2013-12-20 公開日 2014-05-14 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 A structure-specific nucleic acid-binding domain conserved among DNA repair proteins. Proc.Natl.Acad.Sci.USA, 111, 2014
7R8J	Crystal structure of Pseudooceanicola lipolyticus Argonaute bound to 5' p guide DNA in the presence of Mg2+ 分子名称: Argonaute, DNA (5'-D(*TP*TP*AP*CP*TP*GP*CP*AP*CP*AP*GP*GP*TP*GP*AP*CP*GP*A)-3') 著者 Shin, Y, Murakami, K.S. 登録日 2021-06-26 公開日 2022-07-06 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity. Nat Commun, 13, 2022
5XUZ	Crystal structure of Lachnospiraceae bacterium ND2006 Cpf1 in complex with crRNA and target DNA (CCCA PAM) 分子名称: 1,2-ETHANEDIOL, DNA (29-MER), DNA (5'-D(*CP*GP*TP*CP*CP*CP*CP*CP*A)-3'), ... 著者 Yamano, T, Nishimasu, H, Ishitani, R, Nureki, O. 登録日 2017-06-26 公開日 2017-08-09 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural Basis for the Canonical and Non-canonical PAM Recognition by CRISPR-Cpf1. Mol. Cell, 67, 2017
7MID	Sub-complex of Cas4-Cas1-Cas2 bound PAM containing DNA 分子名称: CRISPR-associated endoribonuclease Cas2, CRISPR-associated exonuclease Cas4/endonuclease Cas1 fusion, DNA (33-MER), ... 著者 Hu, C.Y, Ke, A.K. 登録日 2021-04-16 公開日 2021-11-17 実験手法 ELECTRON MICROSCOPY (3.56 Å) 主引用文献 Mechanism for Cas4-assisted directional spacer acquisition in CRISPR-Cas. Nature, 598, 2021
7R8G	Crystal structure of Pseudooceanicola lipolyticus Argonaute bound to 5' OH guide DNA 分子名称: Argonaute, DNA (5'-D(*TP*AP*CP*TP*GP*CP*AP*CP*AP*GP*GP*TP*GP*AP*CP*GP*A)-3') 著者 Shin, Y, Murakami, K.S. 登録日 2021-06-26 公開日 2022-07-06 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity. Nat Commun, 13, 2022
7R8H	Crystal structure of Pseudooceanicola lipolyticus Argonaute bound to 5' p guide DNA 分子名称: Argonaute, DNA (5'-D(*TP*TP*AP*CP*TP*GP*CP*AP*CP*AP*GP*GP*TP*GP*AP*CP*GP*A)-3') 著者 Shin, Y, Murakami, K.S. 登録日 2021-06-26 公開日 2022-07-06 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.54 Å) 主引用文献 Programmable RNA targeting by bacterial Argonaute nucleases with unconventional guide binding and cleavage specificity. Nat Commun, 13, 2022
5FDK	Crystal structure of RecU(D88N) in complex with palindromic DNA duplex 分子名称: Holliday junction resolvase RecU, palindromic DNA 著者 Khavnekar, S, Rafferty, J.B, Kale, A. 登録日 2015-12-16 公開日 2016-12-07 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.208 Å) 主引用文献 Structural insights into dynamics of RecU-HJ complex formation elucidates key role of NTR and stalk region toward formation of reactive state. Nucleic Acids Res., 45, 2017
8GJA	RAD51C-XRCC3 structure 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, RAD51C, ... 著者 Arvai, A.S, Tainer, J.A, Williams, G, Longo, M.A. 登録日 2023-03-15 公開日 2023-08-16 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 RAD51C-XRCC3 structure and cancer patient mutations define DNA replication roles. Nat Commun, 14, 2023

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