PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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7F7N	Solution structure of apo-WhiB4 from Mycobacterium tuberculosis 分子名称: Transcriptional regulator WhiB4 著者 Xia, B, Duan, B. 登録日 2021-06-30 公開日 2021-11-10 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 DNA binding mechanism of WhiB4 from Mycobacterium tuberculosis Magn Reson Lett, 2, 2022
1DXA	BENZO[A]PYRENE DIOL EPOXIDE ADDUCT OF DA IN DUPLEX DNA 分子名称: 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE, DNA (5'-D(*CP*TP*CP*GP*GP*GP*AP*CP*C)-3'), DNA (5'-D(*GP*GP*TP*CP*AP*CP*GP*AP*G)-3') 著者 Yeh, H.J.C, Sayer, J.M, Liu, X, Altieri, A.S, Byrd, R.A, Lakshman, M.K, Yagi, H, Schurter, E.J, Gorenstein, D.G, Jerina, D.M. 登録日 1995-09-01 公開日 1995-12-07 最終更新日 2024-03-13 実験手法 SOLUTION NMR 主引用文献 NMR solution structure of a nonanucleotide duplex with a dG mismatch opposite a 10S adduct derived from trans addition of a deoxyadenosine N6-amino group to (+)-(7R,8S,9S,10R)-7,8-dihydroxy-9,10-epoxy-7,8,9,10- tetrahydrobenzo[a]pyrene: an unusual syn glycosidic torsion angle at the modified dA Biochemistry, 34, 1995
3M7G	Structure of topoisomerase domain of topoisomerase V protein 分子名称: Topoisomerase V 著者 Rajan, R, Taneja, B, Mondragon, A. 登録日 2010-03-16 公開日 2010-08-04 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structures of minimal catalytic fragments of topoisomerase v reveals conformational changes relevant for DNA binding. Structure, 18, 2010
3M6K	Crystal Structure of N-terminal 44 kDa fragment of topoisomerase V in the presence of guanidium hydrochloride 分子名称: PHOSPHATE ION, Topoisomerase V 著者 Rajan, R, Taneja, B, Mondragon, A. 登録日 2010-03-15 公開日 2010-08-04 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Structures of minimal catalytic fragments of topoisomerase v reveals conformational changes relevant for DNA binding. Structure, 18, 2010
3M7D	Crystal structure of an N-terminal 44 kDA fragment of topoisomerase V in the presence of dioxane 分子名称: Topoisomerase V 著者 Rajan, R, Taneja, B, Mondragon, A. 登録日 2010-03-16 公開日 2010-08-04 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.815 Å) 主引用文献 Structures of minimal catalytic fragments of topoisomerase v reveals conformational changes relevant for DNA binding. Structure, 18, 2010
8A5D	Structure of Arp4-Ies4-N-actin-Arp8-Ino80HSA subcomplex (A-module) of Chaetomium thermophilum INO80 分子名称: Actin, Actin related protein 4 (Arp4), Actin-related protein 8, ... 著者 Kunert, F, Metzner, F.J, Eustermann, S, Jung, J, Woike, S, Schall, K, Kostrewa, D, Hopfner, K.P. 登録日 2022-06-14 公開日 2022-12-28 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (2.9 Å) 主引用文献 Structural mechanism of extranucleosomal DNA readout by the INO80 complex. Sci Adv, 8, 2022
3NZ7	A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine ligand containing bis-3-fluoropyrrolidine end side chains 分子名称: 3,6-bis(3-(3'-(S)-fluoropyrrolindino)propionamido)acridine, 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3', POTASSIUM ION 著者 Campbell, N.H, Neidle, S. 登録日 2010-07-16 公開日 2010-08-25 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 Fluorine in medicinal chemistry: beta-fluorination of peripheral pyrrolidines attached to acridine ligands affects their interactions with G-quadruplex DNA. Org.Biomol.Chem., 9, 2011
2YGK	Crystal structure of the NurA nuclease from Sulfolobus solfataricus 分子名称: MANGANESE (II) ION, NURA 著者 Rzechorzek, N.J, Blackwood, J.K, Abrams, A.S, Maman, J.D, Robinson, N.P, Pellegrini, L. 登録日 2011-04-18 公開日 2011-12-14 最終更新日 2012-04-25 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structural and Functional Insights Into DNA-End Processing by the Archaeal Hera Helicase-Nura Nuclease Complex. Nucleic Acids Res., 40, 2012
3M6Z	Crystal structure of an N-terminal 44 kDa fragment of topoisomerase V in the presence of guanidium hydrochloride 分子名称: CHLORIDE ION, GUANIDINE, MAGNESIUM ION, ... 著者 Rajan, R, Taneja, B, Mondragon, A. 登録日 2010-03-16 公開日 2010-08-04 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Structures of minimal catalytic fragments of topoisomerase v reveals conformational changes relevant for DNA binding. Structure, 18, 2010
1GJ2	CO(III)-BLEOMYCIN-OOH BOUND TO AN OLIGONUCLEOTIDE CONTAINING A PHOSPHOGLYCOLATE LESION 分子名称: 2-PHOSPHOGLYCOLIC ACID, 5'-D(*CP*CP*AP*AP*AP*G)-3', 5'-D(*CP*CP*CP*AP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3', ... 著者 Hoehn, S.T, Junker, H.-D, Bunt, R.C, Turner, C.J, Stubbe, J. 登録日 2000-11-01 公開日 2001-06-06 最終更新日 2024-07-10 実験手法 SOLUTION NMR 主引用文献 Solution structure of Co(III)-bleomycin-OOH bound to a phosphoglycolate lesion containing oligonucleotide: implications for bleomycin-induced double-strand DNA cleavage. Biochemistry, 40, 2001
1G5L	CO(III)-BLEOMYCIN-OOH BOUND TO AN OLIGONUCLEOTIDE CONTAINING A PHOSPHOGLYCOLATE LESION 分子名称: 2-PHOSPHOGLYCOLIC ACID, 5'-D(*CP*CP*AP*AP*AP*G)-3', 5'-D(*CP*CP*CP*AP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3', ... 著者 Hoehn, S.T, Junker, H.-D, Bunt, R.C, Turner, C.J, Stubbe, J. 登録日 2000-11-01 公開日 2001-06-06 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of Co(III)-bleomycin-OOH bound to a phosphoglycolate lesion containing oligonucleotide: implications for bleomycin-induced double-strand DNA cleavage. Biochemistry, 40, 2001
6WH2	Structure of the C-terminal BRCT domain of human XRCC1 分子名称: X-ray repair cross complementing protein 1 variant 著者 Pourfarjam, Y, Ellenberger, T, Tainer, J.A, Tomkinson, A.E, Kim, I.K. 登録日 2020-04-07 公開日 2020-12-02 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.414 Å) 主引用文献 An atypical BRCT-BRCT interaction with the XRCC1 scaffold protein compacts human DNA Ligase III alpha within a flexible DNA repair complex. Nucleic Acids Res., 49, 2021
3NKE	High resolution structure of the C-terminal domain CRISP-associated protein Cas1 from Escherichia coli str. K-12 分子名称: 1,2-ETHANEDIOL, SULFATE ION, SULFITE ION, ... 著者 Nocek, B, Skarina, T, Beloglazova, N, Savchenko, A, Joachimiak, A, Yakunin, A. 登録日 2010-06-18 公開日 2010-08-25 最終更新日 2014-12-17 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair. Mol.Microbiol., 79, 2011
2NSK	Doubled Modified Selenium DNA 分子名称: 5'-D(*GP*(UMS)P*GP*(T4S)P*AP*CP*AP*C)-3' 著者 Jiang, J, Shen, J, Huang, Z. 登録日 2006-11-04 公開日 2006-11-14 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Double Modified Selinium DNA [G(Use)G(Tse)ACAC] To be Published
5NR6	NMR structure and 1H, 13C and 15N signal assignments for Dictyostelium discoidans MATB protein S71A mutant 分子名称: MatB protein 著者 Neuhaus, D, Hedgethorne, K, Yang, J.-C. 登録日 2017-04-22 公開日 2017-09-20 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Homeodomain-like DNA binding proteins control the haploid-to-diploid transition in Dictyostelium. Sci Adv, 3, 2017
3B81	Crystal structure of predicted DNA-binding transcriptional regulator of TetR/AcrR family (NP_350189.1) from Clostridium acetobutylicum at 2.10 A resolution 分子名称: 1,2-ETHANEDIOL, SODIUM ION, Transcriptional regulator, ... 著者 Joint Center for Structural Genomics (JCSG) 登録日 2007-10-31 公開日 2007-11-20 最終更新日 2023-01-25 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of predicted DNA-binding transcriptional regulator of TetR/AcrR family (NP_350189.1) from Clostridium acetobutylicum at 2.10 A resolution To be published
3EBE	Crystal structure of xenopus laevis replication initiation factor MCM10 internal domain 分子名称: Protein MCM10 homolog, ZINC ION 著者 Warren, E.M, Eichman, B.F. 登録日 2008-08-27 公開日 2008-12-09 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural basis for DNA binding by replication initiator mcm10. Structure, 16, 2008
3BD3	Crystal structure of single domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals 分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, catalytic antibody 著者 Park, S.K, Kim, J.S. 登録日 2007-11-14 公開日 2008-04-01 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Crystal structure of single-domain VL of an anti-DNA binding antibody 3D8 scFv and its active site revealed by complex structures of a small molecule and metals Proteins, 71, 2008
7CSV	Pseudomonas aeruginosa antitoxin HigA 分子名称: HTH cro/C1-type domain-containing protein 著者 Song, Y.J, Luo, G.H, Bao, R. 登録日 2020-08-17 公開日 2021-01-13 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.71 Å) 主引用文献 Pseudomonas aeruginosa antitoxin HigA functions as a diverse regulatory factor by recognizing specific pseudopalindromic DNA motifs. Environ.Microbiol., 23, 2021
5KGF	Structural model of 53BP1 bound to a ubiquitylated and methylated nucleosome, at 4.5 A resolution 分子名称: DNA (145-MER), Histone H2A type 1, Histone H2B type 1-C/E/F/G/I, ... 著者 Wilson, M.D, Benlekbir, S, Sicheri, F, Rubinstein, J.L, Durocher, D. 登録日 2016-06-13 公開日 2016-07-27 最終更新日 2020-01-15 実験手法 ELECTRON MICROSCOPY (4.54 Å) 主引用文献 The structural basis of modified nucleosome recognition by 53BP1. Nature, 536, 2016
6OIT	CryoEM structure of Arabidopsis DDR' complex (DRD1 peptide-DMS3-RDM1) 分子名称: Protein CHROMATIN REMODELING 35, Protein DEFECTIVE IN MERISTEM SILENCING 3, Protein RDM1 著者 Wongpalee, S.P, Liu, S, Zhou, Z.H, Jacobsen, S.E. 登録日 2019-04-09 公開日 2019-07-24 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 CryoEM structures of Arabidopsis DDR complexes involved in RNA-directed DNA methylation. Nat Commun, 10, 2019
7MID	Sub-complex of Cas4-Cas1-Cas2 bound PAM containing DNA 分子名称: CRISPR-associated endoribonuclease Cas2, CRISPR-associated exonuclease Cas4/endonuclease Cas1 fusion, DNA (33-MER), ... 著者 Hu, C.Y, Ke, A.K. 登録日 2021-04-16 公開日 2021-11-17 実験手法 ELECTRON MICROSCOPY (3.56 Å) 主引用文献 Mechanism for Cas4-assisted directional spacer acquisition in CRISPR-Cas. Nature, 598, 2021
1NHN	THE STRUCTURE OF THE HMG BOX AND ITS INTERACTION WITH DNA 分子名称: HIGH MOBILITY GROUP PROTEIN 1 著者 Read, C.M, Cary, P.D, Crane-Robinson, C, Driscoll, P.C, Carillo, M.O.M, Norman, D.G. 登録日 1994-11-17 公開日 1995-02-07 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The Structure of the Hmg Box and its Interaction with DNA NUCLEIC ACIDS MOL.BIOL., 9, 1995
4JLX	Structure of porcine cyclic GMP-AMP synthase (cGAS) 分子名称: GLYCEROL, MALONATE ION, TETRAETHYLENE GLYCOL, ... 著者 Civril, F, Hopfner, K.P. 登録日 2013-03-13 公開日 2013-06-12 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.004 Å) 主引用文献 Structural mechanism of cytosolic DNA sensing by cGAS Nature, 498, 2013
1NHM	THE STRUCTURE OF THE HMG BOX AND ITS INTERACTION WITH DNA 分子名称: HIGH MOBILITY GROUP PROTEIN 1 著者 Read, C.M, Cary, P.D, Crane-Robinson, C, Driscoll, P.C, Carillo, M.O.M, Norman, D.G. 登録日 1994-11-17 公開日 1995-02-07 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The Structure of the Hmg Box and its Interaction with DNA NUCLEIC ACIDS MOL.BIOL., 9, 1995

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