PDB: 5591 件ウェブページステータス検索Chemie searchBIRD

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8KCK	De novo design protein -N9 分子名称: De novo design protein -N9 著者 Wang, S, Liu, Y. 登録日 2023-08-07 公開日 2024-08-14 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 De novo design protein -N9 To Be Published
8KDQ	De novo design protein -T03 分子名称: De novo design protein -T03 著者 Wang, S, Liu, Y. 登録日 2023-08-09 公開日 2024-08-14 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 De novo design protein -T03 To Be Published
5WLL	De Novo Design of Polynuclear Transition Metal Clusters in Helix Bundles-4DH1 分子名称: GLYCEROL, Helical Bundle 4DH1, ZINC ION 著者 Zhang, S.-Q, Liu, L, DeGrado, W.F. 登録日 2017-07-27 公開日 2018-01-03 最終更新日 2020-01-01 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 De Novo Design of Tetranuclear Transition Metal Clusters Stabilized by Hydrogen-Bonded Networks in Helical Bundles. J. Am. Chem. Soc., 140, 2018
5WLM	De Novo Design of Polynuclear Transition Metal Clusters in Helix Bundles-4DH2 分子名称: Helical Bundle 4DH2, ZINC ION 著者 Zhang, S.-Q, Liu, L, DeGrado, W.F. 登録日 2017-07-27 公開日 2018-01-03 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 De Novo Design of Tetranuclear Transition Metal Clusters Stabilized by Hydrogen-Bonded Networks in Helical Bundles. J. Am. Chem. Soc., 140, 2018
5WLK	De Novo Design of Polynuclear Transition Metal Clusters in Helix Bundles-4EH2 分子名称: Helical Bundle 4EH2, ZINC ION 著者 Zhang, S.-Q, Liu, L, DeGrado, W.F. 登録日 2017-07-27 公開日 2018-01-03 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 De Novo Design of Tetranuclear Transition Metal Clusters Stabilized by Hydrogen-Bonded Networks in Helical Bundles. J. Am. Chem. Soc., 140, 2018
8JU8	de novo designed protein 分子名称: de novo designed protein 著者 Zhang, L. 登録日 2023-06-25 公開日 2023-07-26 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 de novo designed Rossmann fold protein To Be Published
6WA0	De novo designed receptor transmembrane domains enhance CAR-T cytotoxicity and attenuate cytokine release 分子名称: De novo designed receptor transmembrane domain proMP C3.1 著者 Call, M.J, Call, M.E, Chandler, N.J, Nguyen, J.V, Trenker, R. 登録日 2020-03-24 公開日 2021-03-31 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.484 Å) 主引用文献 De novo designed receptor transmembrane domains enhance CAR-T cytotoxicity and attenuate cytokine release To Be Published
8A09	A hexameric barrel state of a de novo coiled-coil assembly: CC-Type2-(QgLaId)4 分子名称: A hexameric barrel state of a de novo coiled-coil assembly: CC-Type2-(QgLaId)4, GLYCEROL 著者 Martin, F.J.O, Rhys, G.G, Dawson, W.M, Woolfson, D.N. 登録日 2022-05-27 公開日 2022-06-15 最終更新日 2024-06-19 実験手法 X-RAY DIFFRACTION (1.35 Å) 主引用文献 Differential sensing with arrays of de novo designed peptide assemblies. Nat Commun, 14, 2023
5WOC	De Novo Design of Covalently Constrained Meso-size Protein Scaffolds with Unique Tertiary Structures 分子名称: (3-methylphenyl)methanol, SER-PRO-GLU-GLU-ARG-ALA-GLN-LEU-CYS-THR-ALA-ALA-GLU-LYS-ALA-ASP-GLU-LEU-GLY 著者 Wu, H, Wu, Y, DeGrado, W.F. 登録日 2017-08-01 公開日 2017-10-04 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 De novo design of covalently constrained mesosize protein scaffolds with unique tertiary structures. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
1VRZ	Helix turn helix motif 分子名称: ACETATE ION, DE NOVO DESIGNED 21 RESIDUE PEPTIDE 著者 Rudresh, Ramakumar, S, Ramagopal, U.A, Inai, Y, Sahal, D. 登録日 2005-10-14 公開日 2005-11-01 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.05 Å) 主引用文献 De Novo Design and Characterization of a Helical Hairpin Eicosapeptide; Emergence of an Anion Receptor in the Linker Region. Structure, 12, 2004
7OSV	DeNovoTIM6-SB, a de novo designed TIM barrel with a salt-bridge cluster (crystal form 1) 分子名称: ACETATE ION, DI(HYDROXYETHYL)ETHER, DeNovoTIM6-SB, ... 著者 Kordes, S, Romero-Romero, S, Hocker, B. 登録日 2021-06-09 公開日 2021-12-15 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.66 Å) 主引用文献 A newly introduced salt bridge cluster improves structural and biophysical properties of de novo TIM barrels. Protein Sci., 31, 2022
7P12	DeNovoTIM13-SB, a de novo designed TIM barrel with a salt-bridge cluster 分子名称: CHLORIDE ION, DeNovoTIM13-SB, PHOSPHATE ION 著者 Kordes, S, Romero-Romero, S, Hocker, B. 登録日 2021-07-01 公開日 2021-12-15 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.69 Å) 主引用文献 A newly introduced salt bridge cluster improves structural and biophysical properties of de novo TIM barrels. Protein Sci., 31, 2022
7UNH	De novo designed chlorophyll dimer protein in apo state, SP2 分子名称: 1,2-ETHANEDIOL, SP2 designed chlorophyll dimer protein 著者 Kennedy, M.A, Stoddard, B.L, Ennist, N.M. 登録日 2022-04-11 公開日 2023-04-19 最終更新日 2024-06-12 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 De novo design of proteins housing excitonically coupled chlorophyll special pairs. Nat.Chem.Biol., 2024
7UNI	De novo designed chlorophyll dimer protein with Zn pheophorbide a methyl ester, SP2-ZnPPaM 分子名称: 1,2-ETHANEDIOL, PHOSPHATE ION, SP2-ZnPPaM designed chlorophyll dimer protein, ... 著者 Kennedy, M.A, Stoddard, B.L, Ennist, N.M. 登録日 2022-04-11 公開日 2023-04-19 最終更新日 2024-06-12 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 De novo design of proteins housing excitonically coupled chlorophyll special pairs. Nat.Chem.Biol., 2024
7UNJ	De novo designed chlorophyll dimer protein with Zn pheophorbide a methyl ester matching geometry of purple bacterial special pair, SP1-ZnPPaM 分子名称: 1,2-ETHANEDIOL, SP1-ZnPPaM designed chlorophyll dimer protein, SULFATE ION, ... 著者 Kennedy, M.A, Stoddard, B.L, Ennist, N.M. 登録日 2022-04-11 公開日 2023-04-19 最終更新日 2024-06-12 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 De novo design of proteins housing excitonically coupled chlorophyll special pairs. Nat.Chem.Biol., 2024
7FB8	De Novo-Designed and Disulfide-Bridged Peptide Heterodimer - hd1 分子名称: ASP-ASP-LYS-ASP-CYS-ASP-GLU-TYR-CYS-LYS-LYS-THR-LYS-GLU-NH2, GLU-LE1-THR-GLY-HIS-ILE-GLU-GLY-PRO-THR-LE1-THR-LE1-HIS-CYS-LYS-NH2 著者 Yao, H, Yao, S, Zheng, Y, Moyer, A, Baker, D, Wu, C. 登録日 2021-07-08 公開日 2022-05-18 最終更新日 2023-11-15 実験手法 SOLUTION NMR 主引用文献 De novo design and directed folding of disulfide-bridged peptide heterodimers. Nat Commun, 13, 2022
7FBA	De Novo-Designed and Disulfide-Bridged Peptide Heterodimer - hd2 分子名称: ALA-LE1-CYS-GLU-CYS-GLY-PRO-THR-ARG-GLU-CYS-LYS-NH2, GLU-CYS-ARG-GLU-TYR-GLY-PRO-LE1-LYS-LE1-LE1-ALA-NH2 著者 Yao, H, Yao, S, Moyer, A, Zheng, Y, Baker, D, Wu, C. 登録日 2021-07-08 公開日 2022-05-18 最終更新日 2023-11-15 実験手法 SOLUTION NMR 主引用文献 De novo design and directed folding of disulfide-bridged peptide heterodimers. Nat Commun, 13, 2022
6W40	An enumerative algorithm for de novo design of proteins with diverse pocket structures 分子名称: DENOVO NTF2 著者 Bera, A.K, Basanta, B, Sankaran, B, Baker, D. 登録日 2020-03-09 公開日 2020-04-08 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.49 Å) 主引用文献 An enumerative algorithm for de novo design of proteins with diverse pocket structures. Proc.Natl.Acad.Sci.USA, 117, 2020
6W3W	An enumerative algorithm for de novo design of proteins with diverse pocket structures 分子名称: DENOVO NTF2, NITRATE ION 著者 Bera, A.K, Basanta, B, Dimaio, F, Sankaran, B, Baker, D. 登録日 2020-03-09 公開日 2020-04-08 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 An enumerative algorithm for de novo design of proteins with diverse pocket structures. Proc.Natl.Acad.Sci.USA, 117, 2020
7Q1Q	De novo designed homo-dimeric antiparallel helices Homomer-S 分子名称: ACETATE ION, Homomer-S 著者 Shanmugaratnam, S, Rhys, G.G, Dawson, W.M, Woolfson, D.N, Hocker, B. 登録日 2021-10-20 公開日 2022-07-20 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1 Å) 主引用文献 De novo designed peptides for cellular delivery and subcellular localisation. Nat.Chem.Biol., 18, 2022
5VJU	De Novo Photosynthetic Reaction Center Protein Variant Equipped with His-Tyr H-bond, Heme B, and Cd(II) ions 分子名称: CADMIUM ION, PROTOPORPHYRIN IX CONTAINING FE, Reaction Center Maquette Leu71His variant 著者 Ennist, N.M, Stayrook, S.E, Dutton, P.L, Moser, C.C. 登録日 2017-04-19 公開日 2018-04-25 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.08 Å) 主引用文献 De novo protein design of photochemical reaction centers. Nat Commun, 13, 2022
5VJT	De Novo Photosynthetic Reaction Center Protein Equipped with Heme B and Zn(II) cations 分子名称: CHLORIDE ION, PROTOPORPHYRIN IX CONTAINING FE, Reaction Center Maquette, ... 著者 Ennist, N.M, Stayrook, S.E, Dutton, P.L, Moser, C.C. 登録日 2017-04-19 公開日 2018-04-25 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 De novo protein design of photochemical reaction centers. Nat Commun, 13, 2022
5VJS	De Novo Photosynthetic Reaction Center Protein Equipped with Heme B, a synthetic Zn porphyrin, and Zn(II) cations 分子名称: CHLORIDE ION, PROTOPORPHYRIN IX CONTAINING FE, Reaction Center Maquette, ... 著者 Ennist, N.M, Dutton, P.L, Stayrook, S.E, Moser, C.C. 登録日 2017-04-19 公開日 2018-04-25 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 De novo protein design of photochemical reaction centers. Nat Commun, 13, 2022
6MRR	De novo designed protein Foldit1 分子名称: Foldit1 著者 Koepnick, B, Bick, M.J, Estep, R.D, Kleinfelter, S, Wei, L, Baker, D. 登録日 2018-10-15 公開日 2019-06-12 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.18 Å) 主引用文献 De novo protein design by citizen scientists. Nature, 570, 2019
6MRS	De novo designed protein Peak6 分子名称: Peak6, SULFATE ION 著者 Koepnick, B, Boykov, A, Baker, D. 登録日 2018-10-15 公開日 2019-06-12 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.541 Å) 主引用文献 De novo protein design by citizen scientists. Nature, 570, 2019

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