Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3NL1
DownloadVisualize
BU of 3nl1 by Molmil
Crystal Structure of Salicylate 1,2-dioxygenase from Pseudoaminobacter salicylatoxidans Adducts with gentisate
分子名称: 2,5-dihydroxybenzoic acid, FE (II) ION, GLYCEROL, ...
著者Ferraroni, M, Briganti, F, Matera, I.
登録日2010-06-21
公開日2011-07-13
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.155 Å)
主引用文献Crystal structures of salicylate 1,2-dioxygenase-substrates adducts: A step towards the comprehension of the structural basis for substrate selection in class III ring cleaving dioxygenases.
J.Struct.Biol., 177, 2012
7ZVY
DownloadVisualize
BU of 7zvy by Molmil
Thermococcus kadokarensis phosphomannose isomerase
分子名称: Cupin_2 domain-containing protein, ZINC ION
著者Hoh, f, Calio, A.
登録日2022-05-17
公開日2022-08-24
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献Unravelling the Adaptation Mechanisms to High Pressure in Proteins.
Int J Mol Sci, 23, 2022
5TFZ
DownloadVisualize
BU of 5tfz by Molmil
Crystal structure of the dimethylsulfoniopropionate (DMSP) lyase DddK complexed with nickel and diacrylate
分子名称: 3-(acryloyloxy)propanoic acid, DI(HYDROXYETHYL)ETHER, NICKEL (II) ION, ...
著者Schnicker, N.J, Dey, M.
登録日2016-09-27
公開日2017-06-14
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural and Biochemical Insights into Dimethylsulfoniopropionate Cleavage by Cofactor-Bound DddK from the Prolific Marine Bacterium Pelagibacter.
Biochemistry, 56, 2017
4P9G
DownloadVisualize
BU of 4p9g by Molmil
Structure of the 2,4'-dihydroxyacetophenone dioxygenase from Alcaligenes sp.
分子名称: 2,4'-dihydroxyacetophenone dioxygenase, CARBONATE ION, FE (III) ION, ...
著者Keegan, R, Lebedev, A, Erskine, P, Guo, J, Wood, S.P, Hopper, D.J, Cooper, J.B.
登録日2014-04-03
公開日2014-09-10
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of the 2,4'-dihydroxyacetophenone dioxygenase from Alcaligenes sp. 4HAP
Acta Crystallogr.,Sect.D, 70, 2014
3H7Y
DownloadVisualize
BU of 3h7y by Molmil
Crystal structure of BacB, an enzyme involved in Bacilysin synthesis, in tetragonal form
分子名称: 3-PHENYLPYRUVIC ACID, Bacilysin biosynthesis protein bacB, COBALT (II) ION, ...
著者Rajavel, M, Gopal, B.
登録日2009-04-28
公開日2009-09-22
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.22 Å)
主引用文献Role of Bacillus subtilis BacB in the synthesis of bacilysin
J.Biol.Chem., 284, 2009
8HFB
DownloadVisualize
BU of 8hfb by Molmil
Evolved variant of quercetin 2,4-dioxygenase from Bacillus subtilis
分子名称: 1,2-ETHANEDIOL, GLYCEROL, NICKEL (II) ION, ...
著者Eom, H, Song, W.J.
登録日2022-11-10
公開日2023-03-08
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.24 Å)
主引用文献Underlying Role of Hydrophobic Environments in Tuning Metal Elements for Efficient Enzyme Catalysis.
J.Am.Chem.Soc., 145, 2023
3I7D
DownloadVisualize
BU of 3i7d by Molmil
Crystal structure of sugar phosphate isomerase from a cupin superfamily SPO2919 from Silicibacter pomeroyi (YP_168127.1) from SILICIBACTER POMEROYI DSS-3 at 2.30 A resolution
分子名称: ACETATE ION, CACODYLATE ION, CHLORIDE ION, ...
著者Joint Center for Structural Genomics (JCSG)
登録日2009-07-08
公開日2009-07-21
最終更新日2023-02-01
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of sugar phosphate isomerase from a cupin superfamily SPO2919 from Silicibacter pomeroyi (YP_168127.1) from SILICIBACTER POMEROYI DSS-3 at 2.30 A resolution
To be published
3JZV
DownloadVisualize
BU of 3jzv by Molmil
Crystal structure of Rru_A2000 from Rhodospirillum rubrum: A cupin-2 domain.
分子名称: MANGANESE (II) ION, uncharacterized protein Rru_A2000
著者Ramagopal, U.A, Toro, R, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2009-09-24
公開日2009-10-13
最終更新日2021-02-10
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of Rru_A2000 from Rhodospirillum rubrum: A cupin-2 domain.
To be Published
1ZZB
DownloadVisualize
BU of 1zzb by Molmil
Crystal Structure of CoII HppE in Complex with Substrate
分子名称: (S)-2-HYDROXYPROPYLPHOSPHONIC ACID, COBALT (II) ION, Hydroxypropylphosphonic Acid Epoxidase
著者Higgins, L.J, Yan, F, Liu, P, Liu, H.W, Drennan, C.L.
登録日2005-06-13
公開日2005-07-26
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural insight into antibiotic fosfomycin biosynthesis by a mononuclear iron enzyme
Nature, 437, 2005
1ZZ8
DownloadVisualize
BU of 1zz8 by Molmil
Crystal Structure of FeII HppE in Complex with Substrate Form 2
分子名称: (S)-2-HYDROXYPROPYLPHOSPHONIC ACID, FE (II) ION, Hydroxypropylphosphonic Acid Epoxidase
著者Higgins, L.J, Yan, F, Liu, P, Liu, H.W, Drennan, C.L.
登録日2005-06-13
公開日2005-07-26
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural insight into antibiotic fosfomycin biosynthesis by a mononuclear iron enzyme
Nature, 437, 2005
6A54
DownloadVisualize
BU of 6a54 by Molmil
Crystal structure of DddK mutant Y64A
分子名称: MANGANESE (II) ION, Novel protein with potential Cupin domain
著者Zhang, Y.Z, Li, C.Y.
登録日2018-06-21
公開日2019-02-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure-Function Analysis Indicates that an Active-Site Water Molecule Participates in Dimethylsulfoniopropionate Cleavage by DddK.
Appl. Environ. Microbiol., 85, 2019
3CEW
DownloadVisualize
BU of 3cew by Molmil
Crystal structure of a cupin protein (BF4112) from Bacteroides fragilis. Northeast Structural Genomics Consortium target BfR205
分子名称: Uncharacterized cupin protein, ZINC ION
著者Forouhar, F, Chen, Y, Seetharaman, J, Mao, L, Xiao, R, Ciccosanti, C, Foote, E.L, Maglaqui, M, Wang, H, Baran, M.C, Acton, T.B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
登録日2008-02-29
公開日2008-03-25
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Crystal structure of a cupin protein (BF4112) from Bacteroides fragilis. Northeast Structural Genomics Consortium target BfR205.
To be Published
3NKT
DownloadVisualize
BU of 3nkt by Molmil
Crystal Structure of Salicylate 1,2-dioxygenase from Pseudoaminobacter salicylatoxidans Adducts with naphthoate
分子名称: 1-hydroxynaphthalene-2-carboxylic acid, FE (II) ION, GLYCEROL, ...
著者Ferraroni, M, Briganti, F, Matera, I.
登録日2010-06-21
公開日2011-07-13
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Crystal structures of salicylate 1,2-dioxygenase-substrates adducts: A step towards the comprehension of the structural basis for substrate selection in class III ring cleaving dioxygenases.
J.Struct.Biol., 177, 2012
5UQP
DownloadVisualize
BU of 5uqp by Molmil
The crystal structure of cupin protein from Rhodococcus jostii RHA1
分子名称: CHLORIDE ION, Cupin, SULFATE ION, ...
著者Tan, K, Li, H, Clancy, S, Phillips Jr, G.N, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Enzyme Discovery for Natural Product Biosynthesis (NatPro)
登録日2017-02-08
公開日2017-02-22
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The crystal structure of cupin protein from Rhodococcus jostii RHA1
To Be Published
3NST
DownloadVisualize
BU of 3nst by Molmil
Crystal Structure of Salicylate 1,2-dioxygenase G106A mutant from Pseudoaminobacter salicylatoxidans
分子名称: FE (II) ION, GLYCEROL, Gentisate 1,2-dioxygenase
著者Ferraroni, M, Briganti, F, Matera, I.
登録日2010-07-02
公開日2011-07-13
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The salicylate 1,2-dioxygenase as a model for a conventional gentisate 1,2-dioxygenase: crystal structures of the G106A mutant and its adducts with gentisate and salicylate.
FEBS J., 280, 2013
1ZZ9
DownloadVisualize
BU of 1zz9 by Molmil
Crystal Structure of FeII HppE
分子名称: FE (II) ION, Hydroxypropylphosphonic Acid Epoxidase, SULFATE ION
著者Higgins, L.J, Yan, F, Liu, P, Liu, H.W, Drennan, C.L.
登録日2005-06-13
公開日2005-07-26
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural insight into antibiotic fosfomycin biosynthesis by a mononuclear iron enzyme
Nature, 437, 2005
1Y3T
DownloadVisualize
BU of 1y3t by Molmil
Crystal structure of YxaG, a dioxygenase from Bacillus subtilis
分子名称: FE (III) ION, Hypothetical protein yxaG
著者Gopal, B, Madan, L.L, Betz, S.F, Kossiakoff, A.A.
登録日2004-11-26
公開日2005-01-18
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The Crystal Structure of a Quercetin 2,3-Dioxygenase from Bacillus subtilis Suggests Modulation of Enzyme Activity by a Change in the Metal Ion at the Active Site(s)
Biochemistry, 44, 2005
2D40
DownloadVisualize
BU of 2d40 by Molmil
Crystal Structure of Z3393 from Escherichia coli O157:H7
分子名称: FE (III) ION, putative gentisate 1,2-dioxygenase
著者Adams, M.A, Jia, Z, Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)
登録日2005-10-05
公開日2006-09-26
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (2.41 Å)
主引用文献Structural and biochemical characterization of gentisate 1,2-dioxygenase from Escherichia coli O157:H7
Mol.Microbiol., 61, 2006
5U55
DownloadVisualize
BU of 5u55 by Molmil
Psf4 in complex with Mn2+ and (S)-2-HPP
分子名称: (S)-2-HYDROXYPROPYLPHOSPHONIC ACID, (S)-2-hydroxypropylphosphonic acid epoxidase, MANGANESE (II) ION
著者Chekan, J.R, Nair, S.K.
登録日2016-12-06
公開日2017-01-04
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Characterization of Two Late-Stage Enzymes Involved in Fosfomycin Biosynthesis in Pseudomonads.
ACS Chem. Biol., 12, 2017
3NVC
DownloadVisualize
BU of 3nvc by Molmil
Crystal Structure of Salicylate 1,2-dioxygenase G106A mutant from Pseudoaminobacter salicylatoxidans in complex with salicylate
分子名称: 2-HYDROXYBENZOIC ACID, FE (II) ION, GLYCEROL, ...
著者Ferraroni, M, Briganti, F, Matera, I.
登録日2010-07-08
公開日2011-07-13
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献The salicylate 1,2-dioxygenase as a model for a conventional gentisate 1,2-dioxygenase: crystal structures of the G106A mutant and its adducts with gentisate and salicylate.
FEBS J., 280, 2013
4BIF
DownloadVisualize
BU of 4bif by Molmil
Biochemical and structural characterisation of a novel manganese- dependent hydroxynitrile lyase from bacteria
分子名称: CUPIN 2 CONSERVED BARREL DOMAIN PROTEIN, MANGANESE (II) ION
著者Hajnal, I, Lyskowski, A, Hanefeld, U, Gruber, K, Schwab, H, Steiner, K.
登録日2013-04-10
公開日2013-09-11
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.46 Å)
主引用文献Biochemical and Structural Characterisation of a Novel Bacterial Manganese-Dependent Hydroxynitrile Lyase.
FEBS J., 280, 2013
5U5D
DownloadVisualize
BU of 5u5d by Molmil
Psf4 in complex with Mn2+ and (R)-2-HPP
分子名称: (S)-2-hydroxypropylphosphonic acid epoxidase, MANGANESE (II) ION, [(2R)-2-hydroxypropyl]phosphonic acid
著者Chekan, J.R, Nair, S.K.
登録日2016-12-06
公開日2017-01-04
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Characterization of Two Late-Stage Enzymes Involved in Fosfomycin Biosynthesis in Pseudomonads.
ACS Chem. Biol., 12, 2017
4FAG
DownloadVisualize
BU of 4fag by Molmil
Crystal Structure of the Salicylate 1,2-dioxygenase from Pseudoaminobacter salicylatoxidans W104Y mutant in complex with gentisate
分子名称: 2,5-dihydroxybenzoic acid, FE (III) ION, GLYCEROL, ...
著者Ferraroni, M, Briganti, F, Matera, I.
登録日2012-05-22
公開日2012-09-26
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The generation of a 1-hydroxy-2-naphthoate 1,2-dioxygenase by single point mutations of salicylate 1,2-dioxygenase - Rational design of mutants and the crystal structures of the A85H and W104Y variants.
J.Struct.Biol., 180, 2012
4FAH
DownloadVisualize
BU of 4fah by Molmil
Crystal Structure of the Salicylate 1,2-dioxygenase from Pseudoaminobacter salicylatoxidans A85H mutant
分子名称: FE (III) ION, Gentisate 1,2-dioxygenase
著者Ferraroni, M, Briganti, F, Matera, I.
登録日2012-05-22
公開日2012-09-26
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The generation of a 1-hydroxy-2-naphthoate 1,2-dioxygenase by single point mutations of salicylate 1,2-dioxygenase - Rational design of mutants and the crystal structures of the A85H and W104Y variants.
J.Struct.Biol., 180, 2012
8E8W
DownloadVisualize
BU of 8e8w by Molmil
Crystal structure of SznF from Streptomyces achromogenes var. streptozoticus NRRL 2697 mononuclear Fe(II) structure on the HDO cofactor assembly pathway
分子名称: Cupin domain-containing diiron protein, FE (II) ION
著者McBride, M.J, Boal, A.K.
登録日2022-08-25
公開日2023-08-30
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of SznF from Streptomyces achromogenes var. streptozoticus NRRL 2697 mononuclear Fe(II) structure on the HDO cofactor assembly pathway
To Be Published

221051

件を2024-06-12に公開中

PDB statisticsPDBj update infoContact PDBjnumon