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3D2Y
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Complex of the N-acetylmuramyl-L-alanine amidase AmiD from E.coli with the substrate anhydro-N-acetylmuramic acid-L-Ala-D-gamma-Glu-L-Lys
分子名称: Anhydro-N-acetylmuramic acid-L-Ala-D-gamma-Glu-L-Lys, GLYCEROL, N-acetylmuramoyl-L-alanine amidase amiD
著者Kerff, F, Petrella, S, Herman, R, Sauvage, E, Mercier, F, Luxen, A, Frere, J.M, Joris, B, Charlier, P.
登録日2008-05-09
公開日2009-06-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Specific Structural Features of the N-Acetylmuramoyl-l-Alanine Amidase AmiD from Escherichia coli and Mechanistic Implications for Enzymes of This Family.
J.Mol.Biol., 397, 2010
3CG9
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Crystal structure of the complex of peptidoglycan recognition protein with methyloxane-2,3,4,5-tetrol at 2.9 A resolution
分子名称: L(+)-TARTARIC ACID, Peptidoglycan recognition protein, alpha-L-rhamnopyranose
著者Sharma, P, Kaur, A, Singh, N, Sharma, S, Bhushan, A, Pathak, K.M.L, Kaur, P, Singh, T.P.
登録日2008-03-05
公開日2008-04-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystal structure of the complex of peptidoglycan recognition protein with methyoxane-2,3,4,5-tetrol at 2.9 A resolution
To be Published
3C2X
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BU of 3c2x by Molmil
Crystal structure of peptidoglycan recognition protein at 1.8A resolution
分子名称: GLYCEROL, L(+)-TARTARIC ACID, Peptidoglycan recognition protein, ...
著者Sharma, P, Singh, N, Sinha, M, Sharma, S, Perbandt, M, Betzel, C, Kaur, P, Srinivasan, A, Singh, T.P.
登録日2008-01-26
公開日2008-03-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献Crystal structure of the peptidoglycan recognition protein at 1.8 A resolution reveals dual strategy to combat infection through two independent functional homodimers
J.Mol.Biol., 378, 2008
3EP1
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BU of 3ep1 by Molmil
Structure of the PGRP-Hd from Alvinella pompejana
分子名称: PGRP-Hd - Peptidoglycan recognition protein homologue
著者Delfosse, V, Gagniere, N, Perrodou, E, Poch, O, Lecompte, O, Mayer, C.
登録日2008-09-29
公開日2009-09-29
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of the PGRP-Hd from Alvinella pompejana
To be Published
3O4K
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BU of 3o4k by Molmil
Crystal structure of the complex of peptidoglycan recognition protein (PGRP-S) and lipoteichoic acid at 2.1 A resolution
分子名称: (2S)-1-({3-O-[2-(acetylamino)-4-amino-2,4,6-trideoxy-beta-D-galactopyranosyl]-alpha-D-glucopyranosyl}oxy)-3-(heptanoyloxy)propan-2-yl (7Z)-pentadec-7-enoate, GLYCEROL, L(+)-TARTARIC ACID, ...
著者Sharma, P, Dube, D, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
登録日2010-07-27
公開日2010-08-25
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.11 Å)
主引用文献Structural basis of recognition of pathogen-associated molecular patterns and inhibition of proinflammatory cytokines by camel peptidoglycan recognition protein
J.Biol.Chem., 286, 2011
2WKX
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Crystal structure of the native E. coli zinc amidase AmiD
分子名称: CHLORIDE ION, GLYCEROL, N-ACETYLMURAMOYL-L-ALANINE AMIDASE AMID, ...
著者Petrella, S, Kerff, F, Herman, R, Genereux, C, Pennartz, A, Sauvage, E, Joris, B, Charlier, P.
登録日2009-06-18
公開日2010-01-12
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Specific Structural Features of the N-Acetylmuramoyl-L-Alanine Amidase Amid from Escherichia Coli and Mechanistic Implications for Enzymes of This Family.
J.Mol.Biol., 397, 2010
3NNO
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BU of 3nno by Molmil
Crystal structure of the complex of peptidoglycan recognition protein (PGRP-S) with Alpha-Rhamnose at 2.9 A resolution
分子名称: L(+)-TARTARIC ACID, Peptidoglycan recognition protein 1, alpha-L-rhamnopyranose
著者Dube, D, Sharma, P, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
登録日2010-06-24
公開日2010-07-21
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystal structure of the complex of peptidoglycan recognition protein (PGRP-S) with Alpha-Rhamnose at 2.9 A resolution
To be Published
2XZ4
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BU of 2xz4 by Molmil
Crystal structure of the LFZ ectodomain of the peptidoglycan recognition protein LF
分子名称: 1,2-ETHANEDIOL, 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL, COPPER (II) ION, ...
著者Basbous, N, Coste, F, Leone, P, Vincentelli, R, Royet, J, Kellenberger, C, Roussel, A.
登録日2010-11-23
公開日2011-04-13
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献The Drosophila Peptidoglycan-Recognition Protein Lf Interacts with Peptidoglycan-Recognition Protein Lc to Downregulate the Imd Pathway.
Embo Rep., 12, 2011
2Y2E
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BU of 2y2e by Molmil
crystal structure of AmpD grown at pH 5.5
分子名称: 1,6-ANHYDRO-N-ACETYLMURAMYL-L-ALANINE AMIDASE AMPD, ZINC ION
著者Carrasco-Lopez, C, Rojas-Altuve, A, Zhang, W, Hesek, D, Lee, M, Barbe, S, Andre, I, Silva-Martin, N, Martinez-Ripoll, M, Mobashery, S, Hermoso, J.A.
登録日2010-12-14
公開日2011-07-20
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structures of Bacterial Peptidoglycan Amidase Ampd and an Unprecedented Activation Mechanism.
J.Biol.Chem., 286, 2011
2Y2D
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BU of 2y2d by Molmil
crystal structure of AmpD holoenzyme
分子名称: 1,6-ANHYDRO-N-ACETYLMURAMYL-L-ALANINE AMIDASE AMPD, ZINC ION
著者Carrasco-Lopez, C, Rojas-Altuve, A, Zhang, W, Hesek, D, Lee, M, Barbe, S, Andre, I, Silva-Martin, N, Martinez-Ripoll, M, Mobashery, S, Hermoso, J.A.
登録日2010-12-14
公開日2011-07-20
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structures of Bacterial Peptidoglycan Amidase Ampd and an Unprecedented Activation Mechanism.
J.Biol.Chem., 286, 2011
2Y2C
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crystal structure of AmpD Apoenzyme
分子名称: 1,6-ANHYDRO-N-ACETYLMURAMYL-L-ALANINE AMIDASE AMPD
著者Carrasco-Lopez, C, Rojas-Altuve, A, Zhang, W, Hesek, D, Lee, M, Barbe, S, Andre, I, Silva-Martin, N, Martinez-Ripoll, M, Mobashery, S, Hermoso, J.A.
登録日2010-12-14
公開日2011-07-20
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.802 Å)
主引用文献Crystal Structures of Bacterial Peptidoglycan Amidase Ampd and an Unprecedented Activation Mechanism.
J.Biol.Chem., 286, 2011
2Y28
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crystal structure of Se-Met AmpD derivative
分子名称: 1,6-ANHYDRO-N-ACETYLMURAMYL-L-ALANINE AMIDASE AMPD, ZINC ION
著者Carrasco-Lopez, C, Rojas-Altuve, A, Zhang, W, Hesek, D, Lee, M, Barbe, S, Andre, I, Silva-Martin, N, Martinez-Ripoll, M, Mobashery, S, Hermoso, J.A.
登録日2010-12-14
公開日2011-07-20
最終更新日2011-12-28
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structures of Bacterial Peptidoglycan Amidase Ampd and an Unprecedented Activation Mechanism.
J.Biol.Chem., 286, 2011
2Y2B
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crystal structure of AmpD in complex with reaction products
分子名称: 1,6-ANHYDRO-N-ACETYLMURAMYL-L-ALANINE AMIDASE AMPD, 2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID, L-ALA-GAMMA-D-GLU-MESO-DIAMINOPIMELIC ACID, ...
著者Carrasco-Lopez, C, Rojas-Altuve, A, Zhang, W, Hesek, D, Lee, M, Barbe, S, Andre, I, Silva-Martin, N, Martinez-Ripoll, M, Mobashery, S, Hermoso, J.A.
登録日2010-12-14
公開日2011-07-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structures of Bacterial Peptidoglycan Amidase Ampd and an Unprecedented Activation Mechanism.
J.Biol.Chem., 286, 2011
3RT4
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Structural Basis of Recognition of Pathogen-associated Molecular Patterns and Inhibition of Proinflammatory Cytokines by Camel Peptidoglycan Recognition Protein
分子名称: (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE, L(+)-TARTARIC ACID, Peptidoglycan recognition protein 1
著者Sharma, P, Dube, D, Singh, A, Mishra, B, Singh, N, Sinha, M, Dey, S, Kaur, P, Mitra, D.K, Sharma, S, Singh, T.P.
登録日2011-05-03
公開日2011-06-15
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural Basis of Recognition of Pathogen-associated Molecular Patterns and Inhibition of Proinflammatory Cytokines by Camel Peptidoglycan Recognition Protein.
J.Biol.Chem., 286, 2011
3RDR
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BU of 3rdr by Molmil
Structure of the catalytic domain of XlyA
分子名称: CHLORIDE ION, N-acetylmuramoyl-L-alanine amidase XlyA, ZINC ION
著者Low, L.Y, Liddington, R.C.
登録日2011-04-01
公開日2011-08-10
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Role of net charge on catalytic domain and influence of cell wall binding domain on bactericidal activity, specificity, and host range of phage lysins.
J.Biol.Chem., 286, 2011
3QJ1
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BU of 3qj1 by Molmil
Crystal structure of camel peptidoglycan recognition protein, PGRP-S with a trapped diethylene glycol in the ligand diffusion channel at 3.2 A resolution
分子名称: DI(HYDROXYETHYL)ETHER, GLYCEROL, L(+)-TARTARIC ACID, ...
著者Sharma, P, Yamini, S, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
登録日2011-01-28
公開日2011-02-16
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Crystal structure of camel peptidoglycan recognition protein, PGRP-S with a trapped diethylene glycol in the ligand diffusion channel at 3.2 A resolution
To be Published
3QS0
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Crystal structure of the complex of peptidoglycan recognition protein (PGRP-S) with a bound N-acetylglucosamine in the diffusion channel at 2.5 A resolution
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, L(+)-TARTARIC ACID, ...
著者Dube, D, Sharma, P, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
登録日2011-02-19
公開日2011-03-16
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of the complex of peptidoglycan recognition protein (PGRP-S) with a bound N-acetylglucosamine in the diffusion channel AT 2.5 A resolution
To be Published
2Z9N
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BU of 2z9n by Molmil
Crystal structure of cameline peptidoglycan recognition protein at 3.2 A resolution
分子名称: L(+)-TARTARIC ACID, Peptidoglycan recognition protein
著者Sharma, P, Jain, R, Singh, N, Sharma, S, Kaur, P, Singh, T.P.
登録日2007-09-21
公開日2007-10-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Crystal structure of cameline peptidoglycan recognition protein at 3.2 A resolution
To be Published
3QV4
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BU of 3qv4 by Molmil
Crystal structure of the complex of peptidoglycan recognition protein (PGRP-S) with dipeptide L-ALA D-GLU at 2.7 A resolution
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ALANINE, ...
著者Shukla, P.K, Sharma, P, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
登録日2011-02-25
公開日2011-03-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of the complex of peptidoglycan recognition protein (PGRP-S) with dipeptide L-ALA D-GLU at 2.7 A resolution
To be Published
3OGX
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Crystal structure of the complex of Peptidoglycan Recognition protein (PGRP-s) with Heparin-Dissacharide at 2.8 A resolution
分子名称: 4-deoxy-2-O-sulfo-alpha-L-threo-hex-4-enopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose, GLYCEROL, L(+)-TARTARIC ACID, ...
著者Sharma, P, Dube, D, Sinha, M, Kaur, P, Sharma, S, Singh, T.P.
登録日2010-08-17
公開日2010-09-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural basis of heparin binding to camel peptidoglycan recognition protein-S
Int J Biochem Mol Biol, 3, 2012
4X36
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BU of 4x36 by Molmil
Crystal structure of the autolysin LytA from Streptococcus pneumoniae TIGR4
分子名称: Autolysin, CHOLINE ION, GLYCEROL, ...
著者Cheng, W, Li, Q, Zhou, C.Z, Chen, Y.X.
登録日2014-11-28
公開日2015-05-27
最終更新日2015-06-24
実験手法X-RAY DIFFRACTION (2.101 Å)
主引用文献Full-length structure of the major autolysin LytA.
Acta Crystallogr.,Sect.D, 71, 2015
1ARO
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BU of 1aro by Molmil
T7 RNA POLYMERASE COMPLEXED WITH T7 LYSOZYME
分子名称: MERCURY (II) ION, T7 LYSOZYME, T7 RNA POLYMERASE
著者Steitz, T, Jeruzalmi, D.
登録日1997-08-08
公開日1998-10-21
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structure of T7 RNA polymerase complexed to the transcriptional inhibitor T7 lysozyme.
EMBO J., 17, 1998
4BJ4
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BU of 4bj4 by Molmil
Structure of Pseudomonas aeruginosa amidase Ampdh2
分子名称: AMPDH2, CITRATE ANION
著者Martinez-Caballero, C.S, Carrasco-Lopez, C, Artola-Recolons, C, Hermoso, J.A.
登録日2013-04-16
公開日2013-07-24
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.722 Å)
主引用文献Reaction Products and the X-Ray Structure of Ampdh2, a Virulence Determinant of Pseudomonas Aeruginosa.
J.Am.Chem.Soc., 135, 2013
4BPA
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BU of 4bpa by Molmil
Crystal structure of AmpDh2 from Pseudomonas aeruginosa in complex with NAG-NAM-NAG-NAM tetrasaccharide
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-beta-D-glucopyranoside, AMPDH2, ZINC ION
著者Artola-Recolons, C, Martinez-Caballero, S, Lee, M, Carrasco-Lopez, C, Hesek, D, Spink, E, Lastochkin, E, Zhang, W, Hellman, L, Boggess, B, Mobashery, S, Hermoso, J.A.
登録日2013-05-23
公開日2013-07-17
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Reaction Products and the X-Ray Structure of Ampdh2, a Virulence Determinant of Pseudomonas Aeruginosa.
J.Am.Chem.Soc., 135, 2013
4BOL
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BU of 4bol by Molmil
Crystal structure of AmpDh2 from Pseudomonas aeruginosa in complex with pentapeptide
分子名称: AMPDH2, D-alanyl-N-[(2S,6R)-6-amino-6-carboxy-1-{[(1R)-1-carboxyethyl]amino}-1-oxohexan-2-yl]-D-glutamine, ZINC ION
著者Artola-Recolons, C, Martinez-Caballero, S, Lee, M, Carrasco-Lopez, C, Hesek, D, Spink, E.E, Lastochkin, E, Zhang, W, Hellman, L.M, Boggess, B, Mobashery, S, Hermoso, J.A.
登録日2013-05-21
公開日2013-07-17
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Reaction Products and the X-Ray Structure of Ampdh2, a Virulence Determinant of Pseudomonas Aeruginosa.
J.Am.Chem.Soc., 135, 2013
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