PDB: 42250 件ウェブページステータス検索Chemie searchBIRD

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5XF4	Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having a 1,2-diphenylethylenediamine linker (S,S-configuration) 分子名称: (1S,2S)-1,2-diphenylethane-1,2-diamine, DNA (145-MER), Histone H2A type 1-B/E, ... 著者 Ma, Z, Adhireksan, Z, Murray, B.S, Dyson, P.J, Davey, C.A. 登録日 2017-04-07 公開日 2017-10-11 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.87 Å) 主引用文献 Nucleosome acidic patch-targeting binuclear ruthenium compounds induce aberrant chromatin condensation Nat Commun, 8, 2017
5XF6	Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having an ethylenediamine linker 分子名称: DNA (145-MER), ETHANE-1,2-DIAMINE, Histone H2A, ... 著者 Ma, Z, Adhireksan, Z, Murray, B.S, Dyson, P.J, Davey, C.A. 登録日 2017-04-07 公開日 2017-10-11 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.63 Å) 主引用文献 Nucleosome acidic patch-targeting binuclear ruthenium compounds induce aberrant chromatin condensation Nat Commun, 8, 2017
4JEP	Crystal structure of Toxoplasma gondii nucleoside triphosphate diphosphohydrolase 1 (NTPDase1) 分子名称: Nucleoside-triphosphatase 2 著者 Krug, U, Totzauer, R, Strater, N. 登録日 2013-02-27 公開日 2013-04-10 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 The crystal structure of Toxoplasma gondii nucleoside triphosphate diphosphohydrolase 1 represents a conformational intermediate in the reductive activation mechanism of the tetrameric enzyme. Proteins, 81, 2013
2VHB	AZIDE ADDUCT OF THE BACTERIAL HEMOGLOBIN FROM VITREOSCILLA STERCORARIA 分子名称: AZIDE ION, HEMOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE 著者 Tarricone, C, Galizzi, A, Coda, A, Ascenzi, P, Bolognesi, M. 登録日 1997-02-19 公開日 1998-02-25 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.76 Å) 主引用文献 Unusual structure of the oxygen-binding site in the dimeric bacterial hemoglobin from Vitreoscilla sp. Structure, 5, 1997
4UOG	Crystallographic structure of nucleoside diphosphate kinase from Litopenaeus vannamei complexed with dCDP 分子名称: DEOXYCYTIDINE DIPHOSPHATE, MAGNESIUM ION, NUCLEOSIDE DIPHOSPHATE KINASE 著者 Lopez-Zavala, A.A, Stojanoff, V, Rudino-Pinera, E, Sotelo-Mundo, R.R. 登録日 2014-06-03 公開日 2014-09-10 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure of Nucleoside Diphosphate Kinase from Pacific Shrimp (Litopenaeus Vannamei) in Binary Complexes with Purine and Pyrimidine Nucleoside Diphosphates Acta Crystallogr.,Sect.F, 79, 2014
4UOF	Crystallographic structure of nucleoside diphosphate kinase from Litopenaeus vannamei complexed with dADP 分子名称: 2'-DEOXYADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, NUCLEOSIDE DIPHOSPHATE KINASE 著者 Lopez-Zavala, A.A, Stojanoff, V, Rudino-Pinera, E, Sotelo-Mundo, R.R. 登録日 2014-06-03 公開日 2014-09-10 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.102 Å) 主引用文献 Structure of Nucleoside Diphosphate Kinase from the Pacific Shrimp (Litopenaeus Vannamei) in Binary Complexes with Purine and Pyrimidine Nucleoside Diphosphates Acta Crystallogr.,Sect.F, 79, 2014
4A5B	Crystal structure of the C258S/C268S variant of Toxoplasma gondii nucleoside triphosphate diphosphohydrolase 1 (NTPDase1) 分子名称: NUCLEOSIDE-TRIPHOSPHATASE 2 著者 Krug, U, Zebisch, M, Strater, N. 登録日 2011-10-24 公開日 2011-11-30 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (2.48 Å) 主引用文献 Structural Insight Into Activation Mechanism of Toxoplasma Gondii Nucleoside Triphosphate Diphosphohydrolases by Disulfide Reduction. J.Biol.Chem., 287, 2012
4UOH	Crystallographic structure of nucleoside diphosphate kinase from Litopenaeus vannamei complexed with ADP 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, NUCLEOSIDE DIPHOSPHATE KINASE 著者 Lopez-Zavala, A.A, Guevara-Hernandez, E, Stojanoff, V, Rudino-Pinera, E, Sotelo-Mundo, R.R. 登録日 2014-06-03 公開日 2014-09-10 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.007 Å) 主引用文献 Structure of Nucleoside Diphosphate Kinase from Pacific Shrimp (Litopenaeus Vannamei) in Binary Complexes with Purine and Pyrimidine Nucleoside Diphosphates Acta Crystallogr.,Sect.F, 79, 2014
4DZ6	Transition state mimic of nucleoside-diphosphate kinase from borrelia burgdorferi with bound vanadate and adp 分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, Nucleoside diphosphate kinase, ... 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2012-02-29 公開日 2012-03-14 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure and analysis of nucleoside diphosphate kinase from Borrelia burgdorferi prepared in a transition-state complex with ADP and vanadate moieties. Acta Crystallogr F Struct Biol Commun, 74, 2018
4VHB	THIOCYANATE ADDUCT OF THE BACTERIAL HEMOGLOBIN FROM VITREOSCILLA SP. 分子名称: PROTEIN (HEMOGLOBIN), PROTOPORPHYRIN IX CONTAINING FE, THIOCYANATE ION 著者 Bolognesi, M, Boffi, A, Coletta, M, Mozzarelli, A, Pesce, A, Tarricone, C, Ascenzi, P. 登録日 1999-03-11 公開日 1999-08-31 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Anticooperative ligand binding properties of recombinant ferric Vitreoscilla homodimeric hemoglobin: a thermodynamic, kinetic and X-ray crystallographic study. J.Mol.Biol., 291, 1999
1F8Y	CRYSTAL STRUCTURE ANALYSIS OF NUCLEOSIDE 2-DEOXYRIBOSYLTRANSFERASE COMPLEXED WITH 5-METHYL-2'-DEOXYPSEUDOURIDINE 分子名称: 2'-deoxy-1-methyl-pseudouridine, NUCLEOSIDE 2-DEOXYRIBOSYLTRANSFERASE 著者 Armstrong, S.R, Cook, W.J, Short, S.A, Ealick, S.E. 登録日 2000-07-05 公開日 2000-08-09 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal structures of nucleoside 2-deoxyribosyltransferase in native and ligand-bound forms reveal architecture of the active site. Structure, 4, 1996
1KIC	Inosine-adenosine-guanosine preferring nucleoside hydrolase from Trypanosoma vivax: Asp10Ala mutant in complex with inosine 分子名称: CALCIUM ION, INOSINE, NICKEL (II) ION, ... 著者 Versees, W, Decanniere, K, Van Holsbeke, E, Devroede, N, Steyaert, J. 登録日 2001-12-03 公開日 2002-05-15 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Enzyme-substrate interactions in the purine-specific nucleoside hydrolase from Trypanosoma vivax. J.Biol.Chem., 277, 2002
1ZM7	Crystal structure of D. melanogaster deoxyribonucleoside kinase mutant N64D in complex with dTTP 分子名称: Deoxynucleoside kinase, MAGNESIUM ION, THYMIDINE-5'-TRIPHOSPHATE 著者 Welin, M, Skovgaard, T, Knecht, W, Berenstein, D, Munch-Petersen, B, Piskur, J, Eklund, H. 登録日 2005-05-10 公開日 2005-05-17 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural basis for the changed substrate specificity of Drosophila melanogaster deoxyribonucleoside kinase mutant N64D. Febs J., 272, 2005
1ZMX	Crystal structure of D. melanogaster deoxyribonucleoside kinase N64D mutant in complex with thymidine 分子名称: Deoxynucleoside kinase, SULFATE ION, THYMIDINE 著者 Welin, M, Skovgaard, T, Knecht, W, Berenstein, D, Munch-Petersen, B, Piskur, J, Eklund, H. 登録日 2005-05-11 公開日 2005-05-24 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural basis for the changed substrate specificity of Drosophila melanogaster deoxyribonucleoside kinase mutant N64D. Febs J., 272, 2005
6TK9	Purine-nucleoside phosphorylase from Thermus thermophilus 分子名称: PHOSPHATE ION, Purine nucleoside phosphorylase 著者 Timofeev, V.I, Abramchik, Y.A, Kostromina, M.A, Tuzova, E.S, Esipov, R.S, Kuranova, I.P. 登録日 2019-11-28 公開日 2020-12-16 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Purine-nucleoside phosphorylase from Thermus thermophilus To Be Published
1BUX	3'-PHOSPHORYLATED NUCLEOTIDES BINDING TO NUCLEOSIDE DIPHOSPHATE KINASE 分子名称: 3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE, NUCLEOSIDE DIPHOSPHATE KINASE 著者 Xu, Y, Schneider, B, Deville-Bonne, D, Veron, M, Janin, J. 登録日 1998-09-07 公開日 1999-04-27 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 3'-Phosphorylated nucleotides are tight binding inhibitors of nucleoside diphosphate kinase activity. J.Biol.Chem., 273, 1998
3AGR	Crystal structure of nucleoside triphosphate hydrolases from Neospora caninum 分子名称: Nucleoside triphosphate hydrolase 著者 Matoba, K, Shiba, T, Seiki, M, Asai, T, Harada, S. 登録日 2010-04-06 公開日 2011-04-06 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal structure of nucleoside triphosphate hydrolases from Neospora caninum To be Published
5OLN	X-Ray Structure of the Complex Pyrimidine-nucleoside phosphorylase from Bacillus subtilis at 1.88 A 分子名称: 1,2-ETHANEDIOL, IMIDAZOLE, Pyrimidine-nucleoside phosphorylase, ... 著者 Balaev, V.V, Prokofev, I.I, Gabdoulkhakov, A.G, Betzel, C, Lashkov, A.A. 登録日 2017-07-28 公開日 2018-04-18 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.88 Å) 主引用文献 Crystal structure of pyrimidine-nucleoside phosphorylase from Bacillus subtilis in complex with imidazole and sulfate. Acta Crystallogr F Struct Biol Commun, 74, 2018
6G90	Prespliceosome structure provides insight into spliceosome assembly and regulation (map A2) 分子名称: 56 kDa U1 small nuclear ribonucleoprotein component, Cold sensitive U2 snRNA suppressor 1, Pre-mRNA-processing factor 39, ... 著者 Plaschka, C, Lin, P.-C, Charenton, C, Nagai, K. 登録日 2018-04-10 公開日 2018-08-22 最終更新日 2024-10-23 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Prespliceosome structure provides insights into spliceosome assembly and regulation. Nature, 559, 2018
8AAG	H1-bound palindromic nucleosome, state 1 分子名称: DNA/RNA (185-MER), Histone H1.0-B, Histone H2A type 1, ... 著者 Alegrio Louro, J, Beinsteiner, B, Cheng, T.C, Patel, A.K.M, Boopathi, R, Angelov, D, Hamiche, A, Bednar, J, Kale, S, Dimitrov, S, Klaholz, B. 登録日 2022-07-01 公開日 2022-12-14 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (10 Å) 主引用文献 Nucleosome dyad determines the H1 C-terminus collapse on distinct DNA arms. Structure, 31, 2023
3ZTO	Orthorhombic crystal form C222 of the Aquifex aeolicus nucleoside diphosphate kinase 分子名称: NUCLEOSIDE DIPHOSPHATE KINASE, SULFATE ION 著者 Boissier, F, Georgescauld, F, Moynie, L, Dupuy, J.-W, Sarger, C, Podar, M, Lascu, I, Giraud, M.-F, Dautant, A. 登録日 2011-07-12 公開日 2012-03-14 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (1.47 Å) 主引用文献 An Intersubunit Disulfide Bridge Stabilizes the Tetrameric Nucleoside Diphosphate Kinase of Aquifex Aeolicus. Proteins, 80, 2012
3ZTQ	Hexagonal crystal form P61 of the Aquifex aeolicus nucleoside diphosphate kinase 分子名称: NUCLEOSIDE DIPHOSPHATE KINASE 著者 Boissier, F, Georgescauld, F, Moynie, L, Dupuy, J.-W, Sarger, C, Podar, M, Lascu, I, Giraud, M.-F, Dautant, A. 登録日 2011-07-12 公開日 2012-02-29 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 An Inter-Subunit Disulphide Bridge Stabilizes the Tetrameric Nucleoside Diphosphate Kinase of Aquifex Aeolicus Proteins, 80, 2012
3ZTS	Hexagonal form P6122 of the Aquifex aeolicus nucleoside diphosphate kinase (FINAL STAGE OF RADIATION DAMAGE) 分子名称: NUCLEOSIDE DIPHOSPHATE KINASE 著者 Boissier, F, Georgescauld, F, Moynie, L, Dupuy, J.-W, Sarger, C, Podar, M, Lascu, I, Giraud, M.-F, Dautant, A. 登録日 2011-07-12 公開日 2012-03-14 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 An Inter-Subunit Disulphide Bridge Stabilizes the Tetrameric Nucleoside Diphosphate Kinase of Aquifex Aeolicus Proteins, 80, 2012
3ZTR	Hexagonal form P6122 of the Aquifex aeolicus nucleoside diphosphate kinase (FIRST STAGE OF RADIATION DAMAGE) 分子名称: NUCLEOSIDE DIPHOSPHATE KINASE 著者 Boissier, F, Georgescauld, F, Moynie, L, Dupuy, J.-W, Sarger, C, Podar, M, Lascu, I, Giraud, M.-F, Dautant, A. 登録日 2011-07-12 公開日 2012-03-14 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 An Inter-Subunit Disulphide Bridge Stabilizes the Tetrameric Nucleoside Diphosphate Kinase of Aquifex Aeolicus Proteins, 80, 2012
4ANC	CRYSTAL FORM I OF THE D93N MUTANT OF NUCLEOSIDE DIPHOSPHATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS 分子名称: NUCLEOSIDE DIPHOSPHATE KINASE 著者 Georgescauld, F, Moynie, L, Habersetzer, J, Lascu, I, Dautant, A. 登録日 2012-03-16 公開日 2013-03-13 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Intersubunit Ionic Interactions Stabilize the Nucleoside Diphosphate Kinase of Mycobacterium Tuberculosis. Plos One, 8, 2013

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