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5XF4
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BU of 5xf4 by Molmil
Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having a 1,2-diphenylethylenediamine linker (S,S-configuration)
分子名称: (1S,2S)-1,2-diphenylethane-1,2-diamine, DNA (145-MER), Histone H2A type 1-B/E, ...
著者Ma, Z, Adhireksan, Z, Murray, B.S, Dyson, P.J, Davey, C.A.
登録日2017-04-07
公開日2017-10-11
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.87 Å)
主引用文献Nucleosome acidic patch-targeting binuclear ruthenium compounds induce aberrant chromatin condensation
Nat Commun, 8, 2017
5XF6
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Nucleosome core particle with an adduct of a binuclear RAPTA (Ru-arene-phosphaadamantane) compound having an ethylenediamine linker
分子名称: DNA (145-MER), ETHANE-1,2-DIAMINE, Histone H2A, ...
著者Ma, Z, Adhireksan, Z, Murray, B.S, Dyson, P.J, Davey, C.A.
登録日2017-04-07
公開日2017-10-11
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.63 Å)
主引用文献Nucleosome acidic patch-targeting binuclear ruthenium compounds induce aberrant chromatin condensation
Nat Commun, 8, 2017
4JEP
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BU of 4jep by Molmil
Crystal structure of Toxoplasma gondii nucleoside triphosphate diphosphohydrolase 1 (NTPDase1)
分子名称: Nucleoside-triphosphatase 2
著者Krug, U, Totzauer, R, Strater, N.
登録日2013-02-27
公開日2013-04-10
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献The crystal structure of Toxoplasma gondii nucleoside triphosphate diphosphohydrolase 1 represents a conformational intermediate in the reductive activation mechanism of the tetrameric enzyme.
Proteins, 81, 2013
2VHB
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BU of 2vhb by Molmil
AZIDE ADDUCT OF THE BACTERIAL HEMOGLOBIN FROM VITREOSCILLA STERCORARIA
分子名称: AZIDE ION, HEMOGLOBIN, PROTOPORPHYRIN IX CONTAINING FE
著者Tarricone, C, Galizzi, A, Coda, A, Ascenzi, P, Bolognesi, M.
登録日1997-02-19
公開日1998-02-25
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Unusual structure of the oxygen-binding site in the dimeric bacterial hemoglobin from Vitreoscilla sp.
Structure, 5, 1997
4UOG
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BU of 4uog by Molmil
Crystallographic structure of nucleoside diphosphate kinase from Litopenaeus vannamei complexed with dCDP
分子名称: DEOXYCYTIDINE DIPHOSPHATE, MAGNESIUM ION, NUCLEOSIDE DIPHOSPHATE KINASE
著者Lopez-Zavala, A.A, Stojanoff, V, Rudino-Pinera, E, Sotelo-Mundo, R.R.
登録日2014-06-03
公開日2014-09-10
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of Nucleoside Diphosphate Kinase from Pacific Shrimp (Litopenaeus Vannamei) in Binary Complexes with Purine and Pyrimidine Nucleoside Diphosphates
Acta Crystallogr.,Sect.F, 79, 2014
4UOF
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BU of 4uof by Molmil
Crystallographic structure of nucleoside diphosphate kinase from Litopenaeus vannamei complexed with dADP
分子名称: 2'-DEOXYADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, NUCLEOSIDE DIPHOSPHATE KINASE
著者Lopez-Zavala, A.A, Stojanoff, V, Rudino-Pinera, E, Sotelo-Mundo, R.R.
登録日2014-06-03
公開日2014-09-10
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.102 Å)
主引用文献Structure of Nucleoside Diphosphate Kinase from the Pacific Shrimp (Litopenaeus Vannamei) in Binary Complexes with Purine and Pyrimidine Nucleoside Diphosphates
Acta Crystallogr.,Sect.F, 79, 2014
4A5B
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BU of 4a5b by Molmil
Crystal structure of the C258S/C268S variant of Toxoplasma gondii nucleoside triphosphate diphosphohydrolase 1 (NTPDase1)
分子名称: NUCLEOSIDE-TRIPHOSPHATASE 2
著者Krug, U, Zebisch, M, Strater, N.
登録日2011-10-24
公開日2011-11-30
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2.48 Å)
主引用文献Structural Insight Into Activation Mechanism of Toxoplasma Gondii Nucleoside Triphosphate Diphosphohydrolases by Disulfide Reduction.
J.Biol.Chem., 287, 2012
4UOH
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Crystallographic structure of nucleoside diphosphate kinase from Litopenaeus vannamei complexed with ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, NUCLEOSIDE DIPHOSPHATE KINASE
著者Lopez-Zavala, A.A, Guevara-Hernandez, E, Stojanoff, V, Rudino-Pinera, E, Sotelo-Mundo, R.R.
登録日2014-06-03
公開日2014-09-10
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.007 Å)
主引用文献Structure of Nucleoside Diphosphate Kinase from Pacific Shrimp (Litopenaeus Vannamei) in Binary Complexes with Purine and Pyrimidine Nucleoside Diphosphates
Acta Crystallogr.,Sect.F, 79, 2014
4DZ6
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Transition state mimic of nucleoside-diphosphate kinase from borrelia burgdorferi with bound vanadate and adp
分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, Nucleoside diphosphate kinase, ...
著者Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2012-02-29
公開日2012-03-14
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure and analysis of nucleoside diphosphate kinase from Borrelia burgdorferi prepared in a transition-state complex with ADP and vanadate moieties.
Acta Crystallogr F Struct Biol Commun, 74, 2018
4VHB
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THIOCYANATE ADDUCT OF THE BACTERIAL HEMOGLOBIN FROM VITREOSCILLA SP.
分子名称: PROTEIN (HEMOGLOBIN), PROTOPORPHYRIN IX CONTAINING FE, THIOCYANATE ION
著者Bolognesi, M, Boffi, A, Coletta, M, Mozzarelli, A, Pesce, A, Tarricone, C, Ascenzi, P.
登録日1999-03-11
公開日1999-08-31
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Anticooperative ligand binding properties of recombinant ferric Vitreoscilla homodimeric hemoglobin: a thermodynamic, kinetic and X-ray crystallographic study.
J.Mol.Biol., 291, 1999
1F8Y
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BU of 1f8y by Molmil
CRYSTAL STRUCTURE ANALYSIS OF NUCLEOSIDE 2-DEOXYRIBOSYLTRANSFERASE COMPLEXED WITH 5-METHYL-2'-DEOXYPSEUDOURIDINE
分子名称: 2'-deoxy-1-methyl-pseudouridine, NUCLEOSIDE 2-DEOXYRIBOSYLTRANSFERASE
著者Armstrong, S.R, Cook, W.J, Short, S.A, Ealick, S.E.
登録日2000-07-05
公開日2000-08-09
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structures of nucleoside 2-deoxyribosyltransferase in native and ligand-bound forms reveal architecture of the active site.
Structure, 4, 1996
1KIC
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BU of 1kic by Molmil
Inosine-adenosine-guanosine preferring nucleoside hydrolase from Trypanosoma vivax: Asp10Ala mutant in complex with inosine
分子名称: CALCIUM ION, INOSINE, NICKEL (II) ION, ...
著者Versees, W, Decanniere, K, Van Holsbeke, E, Devroede, N, Steyaert, J.
登録日2001-12-03
公開日2002-05-15
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Enzyme-substrate interactions in the purine-specific nucleoside hydrolase from Trypanosoma vivax.
J.Biol.Chem., 277, 2002
1ZM7
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BU of 1zm7 by Molmil
Crystal structure of D. melanogaster deoxyribonucleoside kinase mutant N64D in complex with dTTP
分子名称: Deoxynucleoside kinase, MAGNESIUM ION, THYMIDINE-5'-TRIPHOSPHATE
著者Welin, M, Skovgaard, T, Knecht, W, Berenstein, D, Munch-Petersen, B, Piskur, J, Eklund, H.
登録日2005-05-10
公開日2005-05-17
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural basis for the changed substrate specificity of Drosophila melanogaster deoxyribonucleoside kinase mutant N64D.
Febs J., 272, 2005
1ZMX
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BU of 1zmx by Molmil
Crystal structure of D. melanogaster deoxyribonucleoside kinase N64D mutant in complex with thymidine
分子名称: Deoxynucleoside kinase, SULFATE ION, THYMIDINE
著者Welin, M, Skovgaard, T, Knecht, W, Berenstein, D, Munch-Petersen, B, Piskur, J, Eklund, H.
登録日2005-05-11
公開日2005-05-24
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structural basis for the changed substrate specificity of Drosophila melanogaster deoxyribonucleoside kinase mutant N64D.
Febs J., 272, 2005
6TK9
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BU of 6tk9 by Molmil
Purine-nucleoside phosphorylase from Thermus thermophilus
分子名称: PHOSPHATE ION, Purine nucleoside phosphorylase
著者Timofeev, V.I, Abramchik, Y.A, Kostromina, M.A, Tuzova, E.S, Esipov, R.S, Kuranova, I.P.
登録日2019-11-28
公開日2020-12-16
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Purine-nucleoside phosphorylase from Thermus thermophilus
To Be Published
1BUX
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BU of 1bux by Molmil
3'-PHOSPHORYLATED NUCLEOTIDES BINDING TO NUCLEOSIDE DIPHOSPHATE KINASE
分子名称: 3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE, NUCLEOSIDE DIPHOSPHATE KINASE
著者Xu, Y, Schneider, B, Deville-Bonne, D, Veron, M, Janin, J.
登録日1998-09-07
公開日1999-04-27
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献3'-Phosphorylated nucleotides are tight binding inhibitors of nucleoside diphosphate kinase activity.
J.Biol.Chem., 273, 1998
3AGR
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BU of 3agr by Molmil
Crystal structure of nucleoside triphosphate hydrolases from Neospora caninum
分子名称: Nucleoside triphosphate hydrolase
著者Matoba, K, Shiba, T, Seiki, M, Asai, T, Harada, S.
登録日2010-04-06
公開日2011-04-06
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of nucleoside triphosphate hydrolases from Neospora caninum
To be Published
5OLN
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BU of 5oln by Molmil
X-Ray Structure of the Complex Pyrimidine-nucleoside phosphorylase from Bacillus subtilis at 1.88 A
分子名称: 1,2-ETHANEDIOL, IMIDAZOLE, Pyrimidine-nucleoside phosphorylase, ...
著者Balaev, V.V, Prokofev, I.I, Gabdoulkhakov, A.G, Betzel, C, Lashkov, A.A.
登録日2017-07-28
公開日2018-04-18
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.88 Å)
主引用文献Crystal structure of pyrimidine-nucleoside phosphorylase from Bacillus subtilis in complex with imidazole and sulfate.
Acta Crystallogr F Struct Biol Commun, 74, 2018
6G90
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BU of 6g90 by Molmil
Prespliceosome structure provides insight into spliceosome assembly and regulation (map A2)
分子名称: 56 kDa U1 small nuclear ribonucleoprotein component, Cold sensitive U2 snRNA suppressor 1, Pre-mRNA-processing factor 39, ...
著者Plaschka, C, Lin, P.-C, Charenton, C, Nagai, K.
登録日2018-04-10
公開日2018-08-22
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Prespliceosome structure provides insights into spliceosome assembly and regulation.
Nature, 559, 2018
8AAG
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BU of 8aag by Molmil
H1-bound palindromic nucleosome, state 1
分子名称: DNA/RNA (185-MER), Histone H1.0-B, Histone H2A type 1, ...
著者Alegrio Louro, J, Beinsteiner, B, Cheng, T.C, Patel, A.K.M, Boopathi, R, Angelov, D, Hamiche, A, Bednar, J, Kale, S, Dimitrov, S, Klaholz, B.
登録日2022-07-01
公開日2022-12-14
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (10 Å)
主引用文献Nucleosome dyad determines the H1 C-terminus collapse on distinct DNA arms.
Structure, 31, 2023
3ZTO
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BU of 3zto by Molmil
Orthorhombic crystal form C222 of the Aquifex aeolicus nucleoside diphosphate kinase
分子名称: NUCLEOSIDE DIPHOSPHATE KINASE, SULFATE ION
著者Boissier, F, Georgescauld, F, Moynie, L, Dupuy, J.-W, Sarger, C, Podar, M, Lascu, I, Giraud, M.-F, Dautant, A.
登録日2011-07-12
公開日2012-03-14
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献An Intersubunit Disulfide Bridge Stabilizes the Tetrameric Nucleoside Diphosphate Kinase of Aquifex Aeolicus.
Proteins, 80, 2012
3ZTQ
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Hexagonal crystal form P61 of the Aquifex aeolicus nucleoside diphosphate kinase
分子名称: NUCLEOSIDE DIPHOSPHATE KINASE
著者Boissier, F, Georgescauld, F, Moynie, L, Dupuy, J.-W, Sarger, C, Podar, M, Lascu, I, Giraud, M.-F, Dautant, A.
登録日2011-07-12
公開日2012-02-29
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献An Inter-Subunit Disulphide Bridge Stabilizes the Tetrameric Nucleoside Diphosphate Kinase of Aquifex Aeolicus
Proteins, 80, 2012
3ZTS
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Hexagonal form P6122 of the Aquifex aeolicus nucleoside diphosphate kinase (FINAL STAGE OF RADIATION DAMAGE)
分子名称: NUCLEOSIDE DIPHOSPHATE KINASE
著者Boissier, F, Georgescauld, F, Moynie, L, Dupuy, J.-W, Sarger, C, Podar, M, Lascu, I, Giraud, M.-F, Dautant, A.
登録日2011-07-12
公開日2012-03-14
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献An Inter-Subunit Disulphide Bridge Stabilizes the Tetrameric Nucleoside Diphosphate Kinase of Aquifex Aeolicus
Proteins, 80, 2012
3ZTR
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BU of 3ztr by Molmil
Hexagonal form P6122 of the Aquifex aeolicus nucleoside diphosphate kinase (FIRST STAGE OF RADIATION DAMAGE)
分子名称: NUCLEOSIDE DIPHOSPHATE KINASE
著者Boissier, F, Georgescauld, F, Moynie, L, Dupuy, J.-W, Sarger, C, Podar, M, Lascu, I, Giraud, M.-F, Dautant, A.
登録日2011-07-12
公開日2012-03-14
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献An Inter-Subunit Disulphide Bridge Stabilizes the Tetrameric Nucleoside Diphosphate Kinase of Aquifex Aeolicus
Proteins, 80, 2012
4ANC
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BU of 4anc by Molmil
CRYSTAL FORM I OF THE D93N MUTANT OF NUCLEOSIDE DIPHOSPHATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS
分子名称: NUCLEOSIDE DIPHOSPHATE KINASE
著者Georgescauld, F, Moynie, L, Habersetzer, J, Lascu, I, Dautant, A.
登録日2012-03-16
公開日2013-03-13
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Intersubunit Ionic Interactions Stabilize the Nucleoside Diphosphate Kinase of Mycobacterium Tuberculosis.
Plos One, 8, 2013

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