PDB: 458 件ウェブページステータス検索Chemie searchBIRD

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3IRW	Structure of a c-di-GMP riboswitch from V. cholerae 分子名称: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), IRIDIUM HEXAMMINE ION, MAGNESIUM ION, ... 著者 Smith, K.D. 登録日 2009-08-24 公開日 2009-11-10 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Structural basis of ligand binding by a c-di-GMP riboswitch. Nat.Struct.Mol.Biol., 16, 2009
8SA6	apo form of adenosylcobalamin riboswitch dimer 分子名称: apo form of adenosylcobalamin riboswitch dimer 著者 Ding, J, Deme, J.C, Stagno, J.R, Yu, P, Lea, S.M, Wang, Y.X. 登録日 2023-03-31 公開日 2023-07-26 最終更新日 2023-10-25 実験手法 ELECTRON MICROSCOPY (5.3 Å) 主引用文献 Capturing heterogeneous conformers of cobalamin riboswitch by cryo-EM. Nucleic Acids Res., 51, 2023
4FEL	Crystal structure of the U25A/A46G mutant of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine 分子名称: ACETATE ION, COBALT HEXAMMINE(III), HYPOXANTHINE, ... 著者 Stoddard, C.D, Trausch, J.J, Widmann, J, Marcano, J, Knight, R, Batey, R.T. 登録日 2012-05-30 公開日 2013-02-27 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Nucleotides Adjacent to the Ligand-Binding Pocket are Linked to Activity Tuning in the Purine Riboswitch. J.Mol.Biol., 425, 2013
4FEJ	Crystal structure of the A24U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine 分子名称: A24U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain, ACETATE ION, COBALT HEXAMMINE(III), ... 著者 Stoddard, C.D, Trausch, J.J, Widmann, J, Marcano, J, Knight, R, Batey, R.T. 登録日 2012-05-30 公開日 2013-02-27 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Nucleotides Adjacent to the Ligand-Binding Pocket are Linked to Activity Tuning in the Purine Riboswitch. J.Mol.Biol., 425, 2013
4Y1I	Lactococcus lactis yybP-ykoY Mn riboswitch bound to Mn2+ 分子名称: BARIUM ION, GUANOSINE-5'-TRIPHOSPHATE, Lactococcus lactis yybP-ykoY riboswitch, ... 著者 Price, I.R, Ke, A. 登録日 2015-02-07 公開日 2015-04-08 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Mn(2+)-Sensing Mechanisms of yybP-ykoY Orphan Riboswitches. Mol.Cell, 57, 2015
5DDO	Structural and Dynamic Basis for Low Affinity-High Selectivity Binding of L-glutamine by the Gln-riboswitch 分子名称: L-glutamine riboswitch (58-MER), U1 small nuclear ribonucleoprotein A 著者 Ren, A, Patel, D. 登録日 2015-08-25 公開日 2015-12-23 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural and Dynamic Basis for Low-Affinity, High-Selectivity Binding of L-Glutamine by the Glutamine Riboswitch. Cell Rep, 13, 2015
4Y1J	Lactococcus lactis yybP-ykoY Mn riboswitch A41U binding site mutant in presence of Mn2+ 分子名称: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, STRONTIUM ION, ... 著者 Price, I.R, Ke, A. 登録日 2015-02-07 公開日 2015-04-08 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.24 Å) 主引用文献 Mn(2+)-Sensing Mechanisms of yybP-ykoY Orphan Riboswitches. Mol.Cell, 57, 2015
4QK8	Thermoanaerobacter pseudethanolicus c-di-AMP riboswitch 分子名称: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, C-di-AMP riboswitch, MAGNESIUM ION, ... 著者 Gao, A, Serganov, A. 登録日 2014-06-05 公開日 2014-08-06 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.05 Å) 主引用文献 Structural insights into recognition of c-di-AMP by the ydaO riboswitch. Nat.Chem.Biol., 10, 2014
4QK9	Thermovirga lienii c-di-AMP riboswitch 分子名称: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, C-di-AMP riboswitch, MAGNESIUM ION 著者 Gao, A, Serganov, A. 登録日 2014-06-05 公開日 2014-08-06 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (3.05 Å) 主引用文献 Structural insights into recognition of c-di-AMP by the ydaO riboswitch. Nat.Chem.Biol., 10, 2014
4QKA	c-di-AMP riboswitch from Thermoanaerobacter pseudethanolicus, iridium hexamine soak 分子名称: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, C-di-AMP riboswitch, IRIDIUM HEXAMMINE ION, ... 著者 Gao, A, Serganov, A. 登録日 2014-06-05 公開日 2014-08-06 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structural insights into recognition of c-di-AMP by the ydaO riboswitch. Nat.Chem.Biol., 10, 2014
3D2V	Structure of the eukaryotic TPP-specific riboswitch bound to the antibacterial compound pyrithiamine pyrophosphate 分子名称: 1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-3-(2-{[HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}ETHYL)-2-METHYLPYRIDINIUM, MAGNESIUM ION, TPP-specific riboswitch 著者 Thore, S, Frick, C, Ban, N. 登録日 2008-05-09 公開日 2008-07-01 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural basis of thiamine pyrophosphate analogues binding to the eukaryotic riboswitch J.Am.Chem.Soc., 130, 2008
4JF2	Structure of a class II preQ1 riboswitch reveals ligand recognition by a new fold 分子名称: 7-DEAZA-7-AMINOMETHYL-GUANINE, CESIUM ION, MAGNESIUM ION, ... 著者 Liberman, J.A, Wedekind, J.E. 登録日 2013-02-27 公開日 2013-04-17 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.28 Å) 主引用文献 Structure of a class II preQ1 riboswitch reveals ligand recognition by a new fold. Nat.Chem.Biol., 9, 2013
4EN5	Crystal structure of fluoride riboswitch, Tl-Acetate soaked 分子名称: FLUORIDE ION, Fluoride riboswitch, MAGNESIUM ION, ... 著者 Ren, A.M, Rajashankar, K.R, Patel, D.J. 登録日 2012-04-12 公開日 2012-05-09 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.957 Å) 主引用文献 Fluoride ion encapsulation by Mg2+ ions and phosphates in a fluoride riboswitch. Nature, 486, 2012
4ENA	Crystal structure of fluoride riboswitch, soaked in Cs+ 分子名称: CESIUM ION, FLUORIDE ION, Fluoride riboswitch, ... 著者 Ren, A.M, Rajashankar, K.R, Patel, D.J. 登録日 2012-04-12 公開日 2012-05-09 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Fluoride ion encapsulation by Mg2+ ions and phosphates in a fluoride riboswitch. Nature, 486, 2012
4ENB	Crystal structure of fluoride riboswitch, bound to Iridium 分子名称: FLUORIDE ION, Fluoride riboswitch, IRIDIUM HEXAMMINE ION, ... 著者 Ren, A.M, Rajashankar, K.R, Patel, D.J. 登録日 2012-04-12 公開日 2012-05-09 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.302 Å) 主引用文献 Fluoride ion encapsulation by Mg2+ ions and phosphates in a fluoride riboswitch. Nature, 486, 2012
5DDQ	L-glutamine riboswitch bound with L-glutamine soaked with Mn2+ 分子名称: GLUTAMINE, L-glutamine riboswitch RNA (61-MER), MAGNESIUM ION, ... 著者 Ren, A, Patel, D.J. 登録日 2015-08-25 公開日 2015-12-23 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structural and Dynamic Basis for Low-Affinity, High-Selectivity Binding of L-Glutamine by the Glutamine Riboswitch. Cell Rep, 13, 2015
5DDR	L-glutamine riboswitch bound with L-glutamine soaked with Cs+ 分子名称: CESIUM ION, GLUTAMINE, L-glutamine riboswitch RNA (61-MER), ... 著者 Ren, A, Patel, D.J. 登録日 2015-08-25 公開日 2015-12-23 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.605 Å) 主引用文献 Structural and Dynamic Basis for Low-Affinity, High-Selectivity Binding of L-Glutamine by the Glutamine Riboswitch. Cell Rep, 13, 2015
4ENC	Crystal structure of fluoride riboswitch 分子名称: FLUORIDE ION, Fluoride riboswitch, MAGNESIUM ION, ... 著者 Ren, A.M, Rajashankar, K.R, Patel, D.J. 登録日 2012-04-12 公開日 2012-05-09 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.272 Å) 主引用文献 Fluoride ion encapsulation by Mg2+ ions and phosphates in a fluoride riboswitch. Nature, 486, 2012
3D2G	Structural basis of thiamine pyrophosphate analogues binding to the eukaryotic riboswitch 分子名称: MAGNESIUM ION, THIAMINE DIPHOSPHATE, TPP-specific riboswitch 著者 Thore, S. 登録日 2008-05-08 公開日 2008-07-01 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Structural basis of thiamine pyrophosphate analogues binding to the eukaryotic riboswitch J.Am.Chem.Soc., 130, 2008
3LA5	X-ray crystal structure of mc6 RNA Riboswitch bound to azacytosine 分子名称: 6-amino-1,3,5-triazin-2(1H)-one, Adenosine RIboswitch, MAGNESIUM ION 著者 Dunstan, M.S, Leys, D. 登録日 2010-01-06 公開日 2010-01-26 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Reengineering orthogonally selective riboswitches Proc.Natl.Acad.Sci.USA, 107, 2010
4RZD	Crystal Structure of a PreQ1 Riboswitch 分子名称: 7-DEAZA-7-AMINOMETHYL-GUANINE, PreQ1-III Riboswitch (Class 3) 著者 Wedekind, J.E, Liberman, J.A, Salim, M. 登録日 2014-12-20 公開日 2015-07-01 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 Structural analysis of a class III preQ1 riboswitch reveals an aptamer distant from a ribosome-binding site regulated by fast dynamics. Proc.Natl.Acad.Sci.USA, 112, 2015
6N2V	Manganese riboswitch from Xanthmonas oryzae bound to Mn(II) 分子名称: MAGNESIUM ION, MANGANESE (II) ION, SODIUM ION, ... 著者 Price, I.R, Ke, A. 登録日 2018-11-14 公開日 2019-10-02 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 Local-to-global signal transduction at the core of a Mn2+sensing riboswitch. Nat Commun, 10, 2019
7TDB	Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, manganese ions 分子名称: MAGNESIUM ION, MANGANESE (II) ION, [2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-1,3-thiazol-5-yl]ethoxy-oxidanyl-phosphoryl]methylphosphonic acid, ... 著者 Nuthanakanti, A, Serganov, A. 登録日 2021-12-30 公開日 2022-02-16 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.56 Å) 主引用文献 Subsite Ligand Recognition and Cooperativity in the TPP Riboswitch: Implications for Fragment-Linking in RNA Ligand Discovery. Acs Chem.Biol., 17, 2022
7TD7	Crystal structure of an E. coli thiM riboswitch bound to thiamine, manganese ions 分子名称: 3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM, MAGNESIUM ION, MANGANESE (II) ION, ... 著者 Nuthanakanti, A, Serganov, A. 登録日 2021-12-30 公開日 2022-02-16 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Subsite Ligand Recognition and Cooperativity in the TPP Riboswitch: Implications for Fragment-Linking in RNA Ligand Discovery. Acs Chem.Biol., 17, 2022
7TDC	Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, calcium ions 分子名称: CALCIUM ION, MAGNESIUM ION, [2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-1,3-thiazol-5-yl]ethoxy-oxidanyl-phosphoryl]methylphosphonic acid, ... 著者 Nuthanakanti, A, Serganov, A. 登録日 2021-12-30 公開日 2022-02-16 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.46 Å) 主引用文献 Subsite Ligand Recognition and Cooperativity in the TPP Riboswitch: Implications for Fragment-Linking in RNA Ligand Discovery. Acs Chem.Biol., 17, 2022

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