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1S5M
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Xylose Isomerase in Substrate and Inhibitor Michaelis States: Atomic Resolution Studies of a Metal-Mediated Hydride Shift
分子名称: MANGANESE (II) ION, SODIUM ION, Xylose isomerase, ...
著者Fenn, T.D, Ringe, D, Petsko, G.A.
登録日2004-01-21
公開日2004-02-10
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Xylose isomerase in substrate and inhibitor michaelis States: atomic resolution studies of a metal-mediated hydride shift(,).
Biochemistry, 43, 2004
5RDN
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PanDDA analysis group deposition -- Endothiapepsin ground state model 47
分子名称: ACETATE ION, DI(HYDROXYETHYL)ETHER, Endothiapepsin, ...
著者Weiss, M.S, Wollenhaupt, J, Metz, A, Barthel, T, Lima, G.M.A, Heine, A, Mueller, U, Klebe, G.
登録日2020-03-24
公開日2020-06-03
最終更新日2020-06-17
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries for Crystallographic Fragment Screening.
Structure, 28, 2020
5RD8
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PanDDA analysis group deposition -- Endothiapepsin ground state model 30
分子名称: ACETATE ION, DI(HYDROXYETHYL)ETHER, Endothiapepsin, ...
著者Weiss, M.S, Wollenhaupt, J, Metz, A, Barthel, T, Lima, G.M.A, Heine, A, Mueller, U, Klebe, G.
登録日2020-03-24
公開日2020-06-03
最終更新日2020-06-17
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries for Crystallographic Fragment Screening.
Structure, 28, 2020
2ZPM
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Crystal structure analysis of PDZ domain B
分子名称: Regulator of sigma E protease
著者Inaba, K, Suzuki, M.
登録日2008-07-17
公開日2008-10-21
最終更新日2017-10-11
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Crystal Structure analysis of PDZ-domain B
To be Published
1V0L
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Xylanase Xyn10A from Streptomyces lividans in complex with xylobio-isofagomine at pH 5.8
分子名称: ENDO-1,4-BETA-XYLANASE A, PIPERIDINE-3,4-DIOL, beta-D-xylopyranose
著者Gloster, T.M, Williams, S.J, Roberts, S, Tarling, C.A, Wicki, J, Withers, S.G, Davies, G.J.
登録日2004-03-31
公開日2004-08-16
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Atomic Resolution Analyses of the Binding of Xylobiose-Derived Deoxynojirimycin and Isofagomine to Xylanase Xyn10A
Chem.Commun.(Camb.), 16, 2004
3AZD
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Crystal structure of tropomyosin N-terminal fragment at 0.98A resolution
分子名称: short alpha-tropomyosin,transcription factor GCN4
著者Meshcheryakov, V.A, Krieger, I, Kostyukova, A.S, Samatey, F.A.
登録日2011-05-23
公開日2011-10-19
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Structure of a tropomyosin N-terminal fragment at 0.98 A resolution
Acta Crystallogr.,Sect.D, 67, 2011
5RDX
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PanDDA analysis group deposition -- Endothiapepsin ground state model 54
分子名称: Endothiapepsin
著者Weiss, M.S, Wollenhaupt, J, Metz, A, Barthel, T, Lima, G.M.A, Heine, A, Mueller, U, Klebe, G.
登録日2020-03-24
公開日2020-06-03
最終更新日2020-06-17
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献F2X-Universal and F2X-Entry: Structurally Diverse Compound Libraries for Crystallographic Fragment Screening.
Structure, 28, 2020
5RVH
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BU of 5rvh by Molmil
PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000000265642
分子名称: Non-structural protein 3, quinoline-3-carboxylic acid
著者Correy, G.J, Young, I.D, Thompson, M.C, Fraser, J.S.
登録日2020-09-28
公開日2020-12-16
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking.
Sci Adv, 7, 2021
4A7U
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Structure of human I113T SOD1 complexed with adrenaline in the p21 space group.
分子名称: ACETATE ION, COPPER (II) ION, L-EPINEPHRINE, ...
著者Wright, G.S.A, Kershaw, N.M, Antonyuk, S.V, Strange, R.W, ONeil, P.M, Hasnain, S.S.
登録日2011-11-14
公開日2012-11-28
最終更新日2013-05-08
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Ligand Binding and Aggregation of Pathogenic Sod1.
Nat.Commun., 4, 2013
1TQG
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CheA phosphotransferase domain from Thermotoga maritima
分子名称: Chemotaxis protein cheA
著者Quezada, C.M, Gradinaru, C, Simon, M.I, Bilwes, A.M, Crane, B.R.
登録日2004-06-17
公開日2004-09-07
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Helical Shifts Generate Two Distinct Conformers in the Atomic Resolution Structure of the CheA Phosphotransferase Domain from Thermotoga maritima.
J.Mol.Biol., 341, 2004
7QYO
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BU of 7qyo by Molmil
BAZ2A bromodomain in complex with acetylpyrrole derivative compound 79
分子名称: 1-[2-methyl-4-(3-methylbutyl)-5-(2-piperazin-1-yl-1,3-thiazol-4-yl)-1~{H}-pyrrol-3-yl]ethanone, Bromodomain adjacent to zinc finger domain protein 2A
著者Dalle Vedove, A, Cazzanelli, G, Caflisch, A, Lolli, G.
登録日2022-01-28
公開日2022-09-28
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (0.983 Å)
主引用文献Identification of a BAZ2A-Bromodomain Hit Compound by Fragment Growing.
Acs Med.Chem.Lett., 13, 2022
1EN9
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1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM.
分子名称: DNA (5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3'), MAGNESIUM ION
著者Chiu, T.K, Dickerson, R.E.
登録日2000-03-20
公開日2000-09-25
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (0.985 Å)
主引用文献1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium.
J.Mol.Biol., 301, 2000
1ENE
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1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM.
分子名称: CALCIUM ION, DNA (5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3'), ETHANOL
著者Chiu, T.K, Dickerson, R.E.
登録日2000-03-21
公開日2000-09-25
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (0.985 Å)
主引用文献1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium.
J.Mol.Biol., 301, 2000
1EN3
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1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM
分子名称: DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3'), MAGNESIUM ION
著者Chiu, T.K, Dickerson, R.E.
登録日2000-03-20
公開日2000-09-25
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (0.985 Å)
主引用文献1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium.
J.Mol.Biol., 301, 2000
1EN8
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1 A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM
分子名称: CALCIUM ION, DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3'), ETHANOL
著者Chiu, T.K, Dickerson, R.E.
登録日2000-03-20
公開日2000-09-25
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (0.985 Å)
主引用文献1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium.
J.Mol.Biol., 301, 2000
5S3W
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BU of 5s3w by Molmil
PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 Nsp3 macrodomain in complex with POB0135
分子名称: (3R,4R)-4-(2-methylphenyl)oxolane-3-carboxylic acid, Non-structural protein 3
著者Fearon, D, Schuller, M, Rangel, V.L, Douangamath, A, Rack, J.G.M, Zhu, K, Aimon, A, Brandao-Neto, J, Dias, A, Dunnet, L, Gorrie-Stone, T.J, Powell, A.J, Krojer, T, Skyner, R, Thompson, W, Ahel, I, von Delft, F.
登録日2020-11-02
公開日2021-01-13
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (0.987 Å)
主引用文献Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking.
Sci Adv, 7, 2021
7Z9W
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BRD4 in complex with FragLite1
分子名称: 4-bromo-1H-pyrazole, GLYCEROL, Isoform C of Bromodomain-containing protein 4
著者Turberville, S, Martin, M.P, Hope, I, Noble, M.E.M.
登録日2022-03-21
公開日2022-12-07
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (0.988 Å)
主引用文献Mapping Ligand Interactions of Bromodomains BRD4 and ATAD2 with FragLites and PepLites─Halogenated Probes of Druglike and Peptide-like Molecular Interactions.
J.Med.Chem., 65, 2022
5SBQ
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BU of 5sbq by Molmil
CD44 PanDDA analysis group deposition -- The hyaluronan-binding domain of CD44 in complex with Z44592329
分子名称: CD44 antigen, DIMETHYL SULFOXIDE, N-phenyl-N'-pyridin-3-ylurea, ...
著者Bradshaw, W.J, Katis, V.L, Bezerra, G.A, Koekemoer, L, von Delft, F, Bountra, C, Brennan, P.E, Gileadi, O.
登録日2021-09-14
公開日2021-09-22
実験手法X-RAY DIFFRACTION (0.988 Å)
主引用文献CD44 PanDDA analysis group deposition
To Be Published
6U66
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BU of 6u66 by Molmil
Structure of the trimeric globular domain of Adiponectin
分子名称: Adiponectin, CALCIUM ION, SODIUM ION
著者Pascolutti, R, Kruse, A.C, Erlandson, S.C, Burri, D.J, Zheng, S.
登録日2019-08-29
公開日2020-01-22
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Mapping and engineering the interaction between adiponectin and T-cadherin.
J.Biol.Chem., 295, 2020
3F7L
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BU of 3f7l by Molmil
X-ray Crystal Structure of Alvinella pompejana Cu,Zn Superoxide Dismutase
分子名称: ACETIC ACID, COPPER (I) ION, COPPER (II) ION, ...
著者Shin, D.S, DiDonato, M, Barondeau, D.P, Getzoff, E.D, Tainer, J.A.
登録日2008-11-09
公開日2009-02-10
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Superoxide Dismutase from the Eukaryotic Thermophile Alvinella pompejana: Structures, Stability, Mechanism, and Insights into Amyotrophic Lateral Sclerosis.
J.Mol.Biol., 385, 2009
6DKZ
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Racemic structure of ribifolin, an orbitide from Jatropha ribifolia
分子名称: ribifolin
著者Wang, C.K, King, G.J, Ramalho, S.D.
登録日2018-05-31
公開日2018-11-14
最終更新日2020-01-01
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Synthesis, Racemic X-ray Crystallographic, and Permeability Studies of Bioactive Orbitides from Jatropha Species.
J. Nat. Prod., 81, 2018
8WDG
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Subatomic crystal structure of glucose isomerase from Streptomyces rubiginosus
分子名称: MAGNESIUM ION, Xylitol, Xylose isomerase
著者Nam, K.H.
登録日2023-09-15
公開日2023-10-04
最終更新日2024-04-17
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Xylitol binding to the M1 site of glucose isomerase induces a conformational change in the substrate binding channel.
Biochem.Biophys.Res.Commun., 682, 2023
6TD0
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Crystal structure of vaborbactam bound to KPC-2
分子名称: Carbapenem-hydrolyzing beta-lactamase KPC, GLYCEROL, SULFATE ION, ...
著者Tooke, C.L, Hinchliffe, P, Spencer, J.
登録日2019-11-07
公開日2020-01-22
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Cyclic boronates as versatile scaffolds for KPC-2 beta-lactamase inhibition.
Rsc Med Chem, 11, 2020
4ZC9
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Crystal Structure of the BRD4a/DB-2-190 complex
分子名称: 2-[(6S)-4-(4-chlorophenyl)-2,3,9-trimethyl-6H-thieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-6-yl]-N-(4-{[({2-[(3S)-2,6-dioxopiperidin-3-yl]-1,3-dioxo-2,3-dihydro-1H-isoindol-4-yl}oxy)acetyl]amino}butyl)acetamide, Bromodomain-containing protein 4
著者Seo, H.-S, DeAngelo, S, Bradner, J.E.
登録日2015-04-15
公開日2015-11-18
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献DRUG DEVELOPMENT. Phthalimide conjugation as a strategy for in vivo target protein degradation.
Science, 348, 2015
7A2W
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Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant in complex with VSL12 at pH 3.0
分子名称: CITRIC ACID, Tyrosine-protein kinase Fyn, VSL12
著者Camara-Artigas, A, Plaza-Garrido, M, Salinas-Garcia, M.C.
登録日2020-08-18
公開日2021-08-25
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant in complex with VSL12 at pH 3.0
To be published

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