PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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7DQT	Crystal structure of O6-methylguanine methyltransferase Y91F variant 分子名称: Methylated-DNA--protein-cysteine methyltransferase, SULFATE ION 著者 Kikuchi, M, Iizuka, Y, Yamauchi, T, Tsunoda, M. 登録日 2020-12-24 公開日 2021-12-15 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.13 Å) 主引用文献 Roles of the hydroxy group of tyrosine in crystal structures of Sulfurisphaera tokodaii O6-methylguanine-DNA methyltransferase. Acta Crystallogr.,Sect.F, 77, 2021
7MVS	DNA gyrase complexed with uncleaved DNA and Compound 7 to 2.6A resolution 分子名称: (1S)-2-[(2r,5S)-5-{[(2,3-dihydro-1,4-benzodioxin-6-yl)methyl]amino}-1,3-dioxan-2-yl]-1-(3-fluoro-6-methoxyquinolin-4-yl)ethan-1-ol, CHLORIDE ION, DNA (5'-D(P*AP*GP*CP*CP*GP*TP*AP*GP*GP*GP*CP*CP*CP*TP*AP*CP*GP*GP*CP*T)-3'), ... 著者 Ratigan, S.C, McElroy, C.A. 登録日 2021-05-15 公開日 2021-10-20 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.60137153 Å) 主引用文献 Optimization of TopoIV Potency, ADMET Properties, and hERG Inhibition of 5-Amino-1,3-dioxane-Linked Novel Bacterial Topoisomerase Inhibitors: Identification of a Lead with In Vivo Efficacy against MRSA. J.Med.Chem., 64, 2021
1D53	CRYSTAL STRUCTURE AT 1.5 ANGSTROMS RESOLUTION OF D(CGCICICG), AN OCTANUCLEOTIDE CONTAINING INOSINE, AND ITS COMPARISON WITH D(CGCG) AND D(CGCGCG) STRUCTURES 分子名称: DNA (5'-D(*CP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*IP*CP*IP*CP*G)-3') 著者 Kumar, V.D, Harrison, R.W, Andrews, L.C, Weber, I.T. 登録日 1992-11-05 公開日 1993-04-13 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Crystal structure at 1.5-A resolution of d(CGCICICG), an octanucleotide containing inosine, and its comparison with d(CGCG) and d(CGCGCG) structures. Biochemistry, 31, 1992
1EH7	METHYLATED HUMAN O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE 分子名称: O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE, ZINC ION 著者 Daniels, D.S, Tainer, J.A. 登録日 2000-02-18 公開日 2000-04-12 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Active and alkylated human AGT structures: a novel zinc site, inhibitor and extrahelical base binding. EMBO J., 19, 2000
1EH6	HUMAN O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE 分子名称: O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE, ZINC ION 著者 Daniels, D.S, Tainer, J.A. 登録日 2000-02-18 公開日 2000-04-12 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Active and alkylated human AGT structures: a novel zinc site, inhibitor and extrahelical base binding. EMBO J., 19, 2000
7KZG	Human MBD4 glycosylase domain bound to DNA containing oxacarbenium-ion analog 1-aza-2'-deoxyribose 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... 著者 Pidugu, L.S, Pozharski, E, Drohat, A.C. 登録日 2020-12-10 公開日 2021-11-10 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.68 Å) 主引用文献 Structural Insights into the Mechanism of Base Excision by MBD4. J.Mol.Biol., 433, 2021
7KZ1	Human MBD4 glycosylase domain bound to DNA containing an abasic site 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*CP*CP*AP*GP*CP*GP*(ORP)P*GP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*CP*GP*CP*GP*CP*TP*GP*G)-3'), ... 著者 Pidugu, L.S, Bright, H, Pozharski, E, Drohat, A.C. 登録日 2020-12-09 公開日 2021-11-10 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.62 Å) 主引用文献 Structural Insights into the Mechanism of Base Excision by MBD4. J.Mol.Biol., 433, 2021
8JNE	The cryo-EM structure of the decameric RAD51 ring bound to the nucleosome without the linker DNA binding 分子名称: DNA (153-MER), DNA (156-MER), DNA repair protein RAD51 homolog 1, ... 著者 Shioi, T, Hatazawa, S, Ogasawara, M, Takizawa, Y, Kurumizaka, H. 登録日 2023-06-06 公開日 2024-03-27 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (4.68 Å) 主引用文献 Cryo-EM structures of RAD51 assembled on nucleosomes containing a DSB site. Nature, 628, 2024
8JND	The cryo-EM structure of the nonameric RAD51 ring bound to the nucleosome with the linker DNA binding 分子名称: DNA (153-MER), DNA (156-MER), DNA repair protein RAD51 homolog 1, ... 著者 Shioi, T, Hatazawa, S, Ogasawara, M, Takizawa, Y, Kurumizaka, H. 登録日 2023-06-06 公開日 2024-03-27 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (3.66 Å) 主引用文献 Cryo-EM structures of RAD51 assembled on nucleosomes containing a DSB site. Nature, 628, 2024
4FPV	Crystal structure of D. rerio TDP2 complexed with single strand DNA product 分子名称: DNA (5'-D(P*TP*GP*CP*AP*G)-3'), GLYCEROL, MAGNESIUM ION, ... 著者 Shi, K, Kurahashi, K, Aihara, H. 登録日 2012-06-22 公開日 2012-10-31 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.73 Å) 主引用文献 Structural basis for recognition of 5'-phosphotyrosine adducts by Tdp2. Nat.Struct.Mol.Biol., 19, 2012
1EH8	BENZYLATED HUMAN O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE 分子名称: O6-ALKYLGUANINE-DNA ALKYLTRANSFERASE, ZINC ION 著者 Daniels, D.S, Tainer, J.A. 登録日 2000-02-18 公開日 2000-04-12 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Active and alkylated human AGT structures: a novel zinc site, inhibitor and extrahelical base binding. EMBO J., 19, 2000
8HYL	Crystal structure of DO1 Fv-clasp fragment 分子名称: VH-SARAH, VL-SARAH 著者 Anan, Y, Lu, P, Nagata, K, Itakura, M, Uchida, K. 登録日 2023-01-06 公開日 2024-02-14 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Molecular and structural basis of anti-DNA antibody specificity for pyrrolated proteins. Commun Biol, 7, 2024
8R0S	Structure of reverse transcriptase from Cauliflower Mosaic Virus in complex with RNA/DNA hybrid 分子名称: DNA (5'-D(*GP*CP*TP*AP*CP*GP*CP*AP*CP*TP*GP*CP*TP*GP*GP*A)-3'), Enzymatic polyprotein, RNA (5'-R(*GP*UP*CP*CP*AP*GP*CP*AP*GP*UP*GP*CP*GP*UP*AP*GP*C)-3') 著者 Prabaharan, C, Figiel, M, Chamera, S, Szczepanowski, R, Nowak, E, Nowotny, M. 登録日 2023-10-31 公開日 2024-07-24 最終更新日 2024-08-21 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Structural and biochemical characterization of cauliflower mosaic virus reverse transcriptase. J.Biol.Chem., 300, 2024
1DXN	The Solution Structure of [d(CGC)r(aaa)d(TTTGCG)]2: Hybrid Junctions Flanked by DNA Duplexes 分子名称: DNA/RNA (5'-D(*CP*GP*CP)-R(*AP*AP*AP)-D(*TP*TP*TP*GP*CP*G)-3') 著者 Hsu, S.-T, Chou, M.-T, Cheng, J.-W. 登録日 2000-01-11 公開日 2000-04-11 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Hydration of [D(Cgc)R(Aaa)D(Tttgcg)]2 J.Mol.Biol., 295, 2000
5WW8	Crystal structure of the second DNA-Binding protein under starvation from Mycobacterium smegmatis soaked with iron in the ratio of 480 iron atoms per dodecamer 分子名称: CHLORIDE ION, FE (II) ION, FE (III) ION, ... 著者 Williams, S.M, Chatterji, D. 登録日 2016-12-31 公開日 2017-08-09 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis Metallomics, 9, 2017
5Z51	Helicase binding domain of primase from Mycobacterium tuberculosis 分子名称: ACETATE ION, DI(HYDROXYETHYL)ETHER, DNA primase 著者 Sharma, D.P, Gourinath, S. 登録日 2018-01-16 公開日 2018-11-28 実験手法 X-RAY DIFFRACTION (1.583 Å) 主引用文献 Structural insights into the interaction of helicase and primase inMycobacterium tuberculosis. Biochem. J., 475, 2018
1ERI	X-RAY STRUCTURE OF THE DNA-ECO RI ENDONUCLEASE-DNA RECOGNITION COMPLEX: THE RECOGNITION NETWORK AND THE INTEGRATION OF RECOGNITION AND CLEAVAGE 分子名称: DNA (5'-D(*TP*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), PROTEIN (ECO RI ENDONUCLEASE (E.C.3.1.21.4)) 著者 Kim, Y, Grable, J.C, Love, R, Greene, P.J, Rosenberg, J.M. 登録日 1994-05-18 公開日 1995-02-07 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Refinement of Eco RI endonuclease crystal structure: a revised protein chain tracing. Science, 249, 1990
5WW4	Crystal structure of the second DNA-Binding protein under starvation from Mycobacterium smegmatis soaked with iron in the ratio of 48 iron atoms per dodecamer 分子名称: CHLORIDE ION, FE (II) ION, FE (III) ION, ... 著者 Williams, S.M, Chatterji, D. 登録日 2016-12-31 公開日 2017-08-09 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis Metallomics, 9, 2017
5WW3	Crystal structure of the second DNA-Binding protein under starvation from Mycobacterium smegmatis soaked with iron in the ratio of 24 iron atoms per dodecamer 分子名称: CHLORIDE ION, FE (II) ION, FE (III) ION, ... 著者 Williams, S.M, Chatterji, D. 登録日 2016-12-31 公開日 2017-08-09 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis Metallomics, 9, 2017
5WW9	Crystal structure of R73E mutant of the second DNA-Binding protein under starvation from Mycobacterium smegmatis 分子名称: CHLORIDE ION, FE (III) ION, MAGNESIUM ION, ... 著者 Williams, S.M, Chatterji, D. 登録日 2016-12-31 公開日 2017-08-09 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis Metallomics, 9, 2017
8U0U	DdmD dimer in complex with ssDNA 分子名称: DNA (5'-D(P*TP*TP*AP*TP*TP*TP*TP*TP*TP*TP*T)-3'), Helicase/UvrB N-terminal domain-containing protein 著者 Bravo, J.P.K. 登録日 2023-08-29 公開日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.04 Å) 主引用文献 Plasmid targeting and destruction by the DdmDE bacterial defence system. Nature, 630, 2024
8IA3	Crystal structure of human USF2 bHLHLZ domain in complex with DNA 分子名称: DNA (5'-D(*GP*CP*GP*CP*GP*TP*CP*AP*CP*GP*TP*GP*CP*CP*CP*GP*TP*C)-3'), DNA (5'-D(P*GP*AP*CP*GP*GP*GP*CP*AP*CP*GP*TP*GP*AP*CP*GP*CP*GP*C)-3'), Upstream stimulatory factor 2 著者 Huang, C, Fang, P, Wang, J. 登録日 2023-02-07 公開日 2023-09-20 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.5 Å) 主引用文献 Tetramerization of upstream stimulating factor USF2 requires the elongated bent leucine zipper of the bHLH-LZ domain. J.Biol.Chem., 299, 2023
1D9F	CRYSTAL STRUCTURE OF THE COMPLEX OF DNA POLYMERASE I KLENOW FRAGMENT WITH DNA TETRAMER CARRYING 2'-O-(3-AMINOPROPYL)-RNA MODIFICATION 5'-D(TT)-AP(U)-D(T)-3' 分子名称: DNA POLYMERASE I, DNA/RNA (5'-D(*TP*TP)-R(*(U31)P)-D(*T)-3'), SULFATE ION, ... 著者 Teplova, M, Wallace, S.T, Tereshko, V, Minasov, G, Simons, A.M, Cook, P.D, Manoharan, M, Egli, M. 登録日 1999-10-27 公開日 1999-12-02 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural origins of the exonuclease resistance of a zwitterionic RNA. Proc.Natl.Acad.Sci.USA, 96, 1999
5WW7	Crystal structure of the second DNA-Binding protein under starvation from Mycobacterium smegmatis soaked with iron in the ratio of 360 iron atoms per dodecamer 分子名称: CHLORIDE ION, FE (II) ION, FE (III) ION, ... 著者 Williams, S.M, Chatterji, D. 登録日 2016-12-31 公開日 2017-08-09 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis Metallomics, 9, 2017
5WW5	Crystal structure of the second DNA-Binding protein under starvation from Mycobacterium smegmatis soaked with iron in the ratio of 100 iron atoms per dodecamer 分子名称: CHLORIDE ION, FE (II) ION, FE (III) ION, ... 著者 Williams, S.M, Chatterji, D. 登録日 2016-12-31 公開日 2017-08-09 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 Flexible aspartates propel iron to the ferroxidation sites along pathways stabilized by a conserved arginine in Dps proteins from Mycobacterium smegmatis Metallomics, 9, 2017

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