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7WBX
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BU of 7wbx by Molmil
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-3) of the nucleosome
分子名称: DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ...
著者Osumi, K, Kujirai, T, Ehara, H, Sekine, S, Takizawa, Y, Kurumizaka, H.
登録日2021-12-17
公開日2023-07-05
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structural Basis of Damaged Nucleotide Recognition by Transcribing RNA Polymerase II in the Nucleosome.
J.Mol.Biol., 435, 2023
7WBW
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BU of 7wbw by Molmil
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-3.5) of the nucleosome
分子名称: DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ...
著者Osumi, K, Kujirai, T, Ehara, H, Sekine, S, Takizawa, Y, Kurumizaka, H.
登録日2021-12-17
公開日2023-07-05
最終更新日2025-06-18
実験手法ELECTRON MICROSCOPY (7.1 Å)
主引用文献Structural Basis of Damaged Nucleotide Recognition by Transcribing RNA Polymerase II in the Nucleosome.
J.Mol.Biol., 435, 2023
8JH2
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BU of 8jh2 by Molmil
RNA polymerase II elongation complex bound with Elf1, Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome
分子名称: DNA (218-MER), DNA (40-MER), DNA-directed RNA polymerase subunit, ...
著者Akatsu, M, Fujita, R, Ogasawara, M, Ehara, H, Kujirai, T, Takizawa, Y, Sekine, S, Kurumizaka, H.
登録日2023-05-22
公開日2023-11-29
最終更新日2023-12-20
実験手法ELECTRON MICROSCOPY (5.7 Å)
主引用文献Cryo-EM structures of RNA polymerase II-nucleosome complexes rewrapping transcribed DNA.
J.Biol.Chem., 299, 2023
8JH3
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BU of 8jh3 by Molmil
RNA polymerase II elongation complex containing 40 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome
分子名称: DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ...
著者Akatsu, M, Fujita, R, Ogasawara, M, Ehara, H, Kujirai, T, Takizawa, Y, Sekine, S, Kurumizaka, H.
登録日2023-05-22
公開日2023-11-29
最終更新日2023-12-20
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Cryo-EM structures of RNA polymerase II-nucleosome complexes rewrapping transcribed DNA.
J.Biol.Chem., 299, 2023
8JH4
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BU of 8jh4 by Molmil
RNA polymerase II elongation complex containing 60 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome
分子名称: DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ...
著者Akatsu, M, Fujita, R, Ogasawara, M, Ehara, H, Kujirai, T, Takizawa, Y, Sekine, S, Kurumizaka, H.
登録日2023-05-22
公開日2023-11-29
最終更新日2023-12-20
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Cryo-EM structures of RNA polymerase II-nucleosome complexes rewrapping transcribed DNA.
J.Biol.Chem., 299, 2023
4B2G
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BU of 4b2g by Molmil
Crystal Structure of an Indole-3-Acetic Acid Amido Synthase from Vitis vinifera Involved in Auxin Homeostasis
分子名称: GH3-1 AUXIN CONJUGATING ENZYME, MALONATE ION, [(2S,3R,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl] 2-(1H-indol-3-yl)ethyl hydrogen phosphate
著者Peat, T.S, Bottcher, C, Newman, J, Lucent, D, Cowieson, N, Davies, C.
登録日2012-07-16
公開日2012-12-19
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal Structure of an Indole-3-Acetic Acid Amido Synthetase from Grapevine Involved in Auxin Homeostasis.
Plant Cell, 24, 2012
8IHL
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BU of 8ihl by Molmil
Overlapping tri-nucleosome
分子名称: DNA (353-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
著者Nishimura, M, Fujii, T, Tanaka, H, Maehara, K, Nozawa, K, Takizawa, Y, Ohkawa, Y, Kurumizaka, H.
登録日2023-02-23
公開日2024-01-17
最終更新日2024-01-24
実験手法ELECTRON MICROSCOPY (7.64 Å)
主引用文献Genome-wide mapping and cryo-EM structural analyses of the overlapping tri-nucleosome composed of hexasome-hexasome-octasome moieties.
Commun Biol, 7, 2024
2YKN
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BU of 2ykn by Molmil
Crystal structure of HIV-1 Reverse Transcriptase (RT) in complex with a Difluoromethylbenzoxazole (DFMB) Pyrimidine Thioether derivative, a non-nucleoside RT inhibitor (NNRTI)
分子名称: 2-[DIFLUORO-[(4-METHYL-PYRIMIDINYL)-THIO]METHYL]-BENZOXAZOLE, CALCIUM ION, REVERSE TRANSCRIPTASE/RIBONUCLEASE H
著者Boyer, J, Arnoult, E, Medebielle, M, Guillemont, J, Unge, T, Unge, J, Jochmans, D.
登録日2011-05-28
公開日2011-08-17
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (2.12 Å)
主引用文献Difluoromethylbenzoxazole Pyrimidine Thioether Derivatives: A Novel Class of Potent Non-Nucleoside HIV-1 Reverse Transcriptase Inhibitors.
J.Med.Chem., 54, 2011
3PNP
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BU of 3pnp by Molmil
THE HIGH RESOLUTION CRYSTAL STRUCTURE OF BOVINE SPLEEN PURINE NUCLEOSIDE PHOSPHORYLASE IN COMPLEX FORMS WITH PHOSPHATE AND 9-DEAZAINOSINE
分子名称: MAGNESIUM ION, PHOSPHATE ION, PURINE NUCLEOSIDE PHOSPHORYLASE
著者Pugmire, M.J, Mao, C, Ealick, S.E.
登録日1998-03-27
公開日1999-03-30
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The High Resolution Crystal Structure of Bovine Spleen Purine Nucleoside Phosphorylase in Complex Forms with Phosphate and 9-Deazainosine
To be Published
4BR7
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BU of 4br7 by Molmil
Legionella pneumophila NTPDase1 crystal form I, open, AMPNP complex
分子名称: 5'-O-[(R)-hydroxy(phosphonoamino)phosphoryl]adenosine, CHLORIDE ION, ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I, ...
著者Zebisch, M, Schaefer, P, Lauble, P, Straeter, N.
登録日2013-06-04
公開日2013-07-17
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases
Structure, 21, 2013
4BRH
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BU of 4brh by Molmil
Legionella pneumophila NTPDase1 crystal form II (closed) in complex with MG AND THIAMINE PHOSPHOVANADATE
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, DECAVANADATE, ...
著者Zebisch, M, Schaefer, P, Lauble, P, Straeter, N.
登録日2013-06-04
公開日2013-07-17
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Crystallographic snapshots along the reaction pathway of nucleoside triphosphate diphosphohydrolases.
Structure, 21, 2013
4BRE
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BU of 4bre by Molmil
Legionella pneumophila NTPDase1 crystal form II (closed) in complex with transition state mimic adenosine 5'phosphovanadate
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ADENOSINE-5'-PHOSPHOVANADATE, ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I, ...
著者Zebisch, M, Schaefer, P, Lauble, P, Straeter, N.
登録日2013-06-04
公開日2013-07-17
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases
Structure, 21, 2013
8XBU
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BU of 8xbu by Molmil
The cryo-EM structure of the decameric RAD51 ring bound to the nucleosome with the linker DNA binding
分子名称: DNA (153-MER), DNA (156-MER), DNA repair protein RAD51 homolog 1, ...
著者Shioi, T, Hatazawa, S, Ogasawara, M, Takizawa, Y, Kurumizaka, H.
登録日2023-12-07
公開日2024-03-27
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (4.24 Å)
主引用文献Cryo-EM structures of RAD51 assembled on nucleosomes containing a DSB site.
Nature, 628, 2024
8XBT
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BU of 8xbt by Molmil
The cryo-EM structure of the octameric RAD51 ring bound to the nucleosome with the linker DNA binding
分子名称: DNA (153-MER), DNA (156-MER), DNA repair protein RAD51 homolog 1, ...
著者Shioi, T, Hatazawa, S, Ogasawara, M, Takizawa, Y, Kurumizaka, H.
登録日2023-12-07
公開日2024-03-27
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (4.12 Å)
主引用文献Cryo-EM structures of RAD51 assembled on nucleosomes containing a DSB site.
Nature, 628, 2024
4BR4
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BU of 4br4 by Molmil
Legionella pneumophila NTPDase1 crystal form I, open, apo
分子名称: CHLORIDE ION, ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I, MAGNESIUM ION
著者Zebisch, M, Schaefer, P, Lauble, P, Straeter, N.
登録日2013-06-03
公開日2013-07-17
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases
Structure, 21, 2013
4BRI
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BU of 4bri by Molmil
Legionella pneumophila NTPDase1 crystal form II (closed) in complex with MG UMPPNP
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]uridine, CHLORIDE ION, ...
著者Zebisch, M, Schaefer, P, Lauble, P, Straeter, N.
登録日2013-06-04
公開日2013-07-17
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases
Structure, 21, 2013
4BRC
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BU of 4brc by Molmil
Legionella pneumophila NTPDase1 crystal form II, closed, Mg AMPNP complex
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 5'-O-[(R)-hydroxy(phosphonoamino)phosphoryl]adenosine, CHLORIDE ION, ...
著者Zebisch, M, Schaefer, P, Lauble, P, Straeter, N.
登録日2013-06-04
公開日2013-07-17
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases
Structure, 21, 2013
4BRP
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BU of 4brp by Molmil
Legionella pneumophila NTPDase1 crystal form V (part-open)
分子名称: BROMIDE ION, ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I
著者Zebisch, M, Schaefer, P, Lauble, P, Straeter, N.
登録日2013-06-04
公開日2013-07-17
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases
Structure, 21, 2013
4BRA
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BU of 4bra by Molmil
Legionella pneumophila NTPDase1 crystal form II, closed, Mg AMPPNP complex
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I, GLYCEROL, ...
著者Zebisch, M, Schaefer, P, Lauble, P, Straeter, N.
登録日2013-06-04
公開日2013-07-17
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases
Structure, 21, 2013
4BRF
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BU of 4brf by Molmil
Legionella pneumophila NTPDase1 crystal form II (closed) in complex with a distorted orthomolybdate ion and AMP
分子名称: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ADENOSINE MONOPHOSPHATE, ...
著者Zebisch, M, Schaefer, P, Lauble, P, Straeter, N.
登録日2013-06-04
公開日2013-07-17
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases
Structure, 21, 2013
4BRK
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BU of 4brk by Molmil
Legionella pneumophila NTPDase1 N302Y variant crystal form III (closed) in complex with MG UMPPNP
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonoamino)phosphoryl]oxy}phosphoryl]uridine, CHLORIDE ION, ...
著者Zebisch, M, Schaefer, P, Lauble, P, Straeter, N.
登録日2013-06-04
公開日2013-07-17
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases
Structure, 21, 2013
4BRN
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BU of 4brn by Molmil
Legionella pneumophila NTPDase1 crystal form III (closed) in complex with Mg AMP
分子名称: ADENOSINE MONOPHOSPHATE, CHLORIDE ION, ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I, ...
著者Zebisch, M, Schaefer, P, Lauble, P, Straeter, N.
登録日2013-06-04
公開日2013-07-17
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.69 Å)
主引用文献Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases
Structure, 21, 2013
4BRL
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BU of 4brl by Molmil
Legionella pneumophila NTPDase1 crystal form III (closed) in complex with transition state mimic guanosine 5'-phosphovanadate
分子名称: CHLORIDE ION, ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I, GUANOSINE-5'-PHOSPHOVANADATE, ...
著者Zebisch, M, Schaefer, P, Lauble, P, Straeter, N.
登録日2013-06-04
公開日2013-07-17
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases
Structure, 21, 2013
4BRD
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BU of 4brd by Molmil
Legionella pneumophila NTPDase1 Q193E crystal form II, closed, Mg AMPPNP complex
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I, ...
著者Zebisch, M, Schaefer, P, Lauble, P, Straeter, N.
登録日2013-06-04
公開日2013-07-17
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases
Structure, 21, 2013
4BRM
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BU of 4brm by Molmil
Sulfur SAD phasing of the Legionella pneumophila NTPDase1 - crystal form III (closed) in complex with sulfate
分子名称: CHLORIDE ION, ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I, SULFATE ION
著者Zebisch, M, Schaefer, P, Lauble, P, Straeter, N.
登録日2013-06-04
公開日2013-07-17
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases
Structure, 21, 2013

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