PDB: 1151 件ウェブページステータス検索Chemie searchBIRD

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6LCJ	TtGalA, alpha-galactosidase from Thermus thermopilus in apo form 分子名称: Alpha-galactosidase 著者 Chen, S.C, Hsu, C.H. 登録日 2019-11-19 公開日 2020-07-01 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal Structure of alpha-Galactosidase fromThermus thermophilus: Insight into Hexamer Assembly and Substrate Specificity. J.Agric.Food Chem., 68, 2020
5E74	Crystal Structure of BAZ2B bromodomain in complex with acetylindole compound UZH50 分子名称: Bromodomain adjacent to zinc finger domain protein 2B, N-(1-acetyl-1H-indol-3-yl)-N-(5-hydroxy-2-methylphenyl)-3-(trifluoromethyl)benzamide 著者 Lolli, G, Spiliotopoulos, D, Dolbois, A, Nevado, C, Caflisch, A. 登録日 2015-10-11 公開日 2015-10-21 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.783 Å) 主引用文献 The "Gatekeeper" Residue Influences the Mode of Binding of Acetyl Indoles to Bromodomains. J. Med. Chem., 59, 2016
1PAK	NMR SOLUTION STRUCTURE AND FLEXIBILITY OF A PEPTIDE ANTIGEN REPRESENTING THE RECEPTOR BINDING DOMAIN OF PSEUDOMONAS AERUGINOSA 分子名称: FIMBRIAL PROTEIN PRECURSOR, HYDROXIDE ION 著者 Mcinnes, C, Sonnichsen, F.D, Kay, C.M, Hodges, R.S, Sykes, B.D. 登録日 1993-08-25 公開日 1994-01-31 最終更新日 2017-11-29 実験手法 SOLUTION NMR 主引用文献 NMR solution structure and flexibility of a peptide antigen representing the receptor binding domain of Pseudomonas aeruginosa. Biochemistry, 32, 1993
1PAJ	NMR SOLUTION STRUCTURE AND FLEXIBILITY OF A PEPTIDE ANTIGEN REPRESENTING THE RECEPTOR BINDING DOMAIN OF PSEUDOMONAS AERUGINOSA 分子名称: FIMBRIAL PROTEIN PRECURSOR, HYDROXIDE ION 著者 Mcinnes, C, Sonnichsen, F.D, Kay, C.M, Hodges, R.S, Sykes, B.D. 登録日 1993-08-25 公開日 1994-01-31 最終更新日 2017-11-29 実験手法 SOLUTION NMR 主引用文献 NMR solution structure and flexibility of a peptide antigen representing the receptor binding domain of Pseudomonas aeruginosa. Biochemistry, 32, 1993
4M99	Acetyltransferase domain of PglB from Neisseria gonorrhoeae FA1090 in complex with acetyl coenzyme A 分子名称: ACETYL COENZYME *A, Pilin glycosylation protein, SODIUM ION 著者 Morrison, M.J, Imperiali, B. 登録日 2013-08-14 公開日 2013-10-02 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Biochemical analysis and structure determination of bacterial acetyltransferases responsible for the biosynthesis of UDP-N,N'-diacetylbacillosamine. J.Biol.Chem., 288, 2013
2E6K	X-ray structure of Thermus thermopilus HB8 TT0505 分子名称: Transketolase 著者 Yoshida, H, Kamitori, S, Agari, Y, Iino, H, Kanagawa, M, Nakagawa, N, Ebihara, A, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2006-12-27 公開日 2007-11-13 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.09 Å) 主引用文献 X-ray structure of Thermus thermophilus HB8 TT0505 To be Published
5OWB	Crystal structure of the human BRPF1 bromodomain in complex with DSPBP1004 分子名称: 4-methyl-6-oxidanyl-1-benzofuran-3-one, NITRATE ION, Peregrin 著者 Zhu, J, Spiliotopoulos, D, Caflisch, A. 登録日 2017-08-31 公開日 2018-07-18 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Crystal structure of the human BRPF1 bromodomain in complex with DSPBP1004 To Be Published
5OWE	Crystal structure of the human BRPF1 bromodomain in complex with DSPBP1010 分子名称: 1,3-bis(oxidanyl)benzo[c]chromen-6-one, NITRATE ION, Peregrin 著者 Zhu, J, Spiliotopoulos, D, Caflisch, A. 登録日 2017-08-31 公開日 2018-10-10 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Crystal structure of the human BRPF1 bromodomain in complex with DSPBP1010 To Be Published
5OWK	Crystal structure of CREBBP bromodomain complexed with DSPB2A002 分子名称: CREB-binding protein, ethyl 4-chloranyl-1-methyl-6-oxidanylidene-pyridine-3-carboxylate 著者 Zhu, J, Spiliotopoulos, D, Caflisch, A. 登録日 2017-09-01 公開日 2018-08-29 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 Binding Motifs in the CBP Bromodomain: An Analysis of 20 Crystal Structures of Complexes with Small Molecules. ACS Med Chem Lett, 9, 2018
7PNB	Sulfolobus acidocaldarius 0406 filament. 分子名称: 6-deoxy-6-sulfo-beta-D-glucopyranose-(1-3)-[alpha-D-mannopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Sulfolobus acidocaldarius 0406 filament., beta-D-glucopyranose-(1-4)-6-deoxy-6-sulfo-beta-D-glucopyranose-(1-3)-[alpha-D-mannopyranose-(1-4)][alpha-D-mannopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 著者 Isupov, M.N, Gaines, M, Daum, B. 登録日 2021-09-06 公開日 2022-09-14 最終更新日 2023-03-29 実験手法 ELECTRON MICROSCOPY (3.46 Å) 主引用文献 Electron cryo-microscopy reveals the structure of the archaeal thread filament. Nat Commun, 13, 2022
7D6P	X-ray structure of the intermolecular complex of Clostridium perfringens sortase C with the C-terminal cell wall sorting signal motif. 分子名称: GLYCEROL, SULFATE ION, Sortase family protein 著者 Kamitori, S, Tamai, E. 登録日 2020-10-01 公開日 2021-06-02 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.38 Å) 主引用文献 X-ray structures of Clostridium perfringens sortase C with C-terminal cell wall sorting motif of LPST demonstrate role of subsite for substrate-binding and structural variations of catalytic site. Biochem.Biophys.Res.Commun., 554, 2021
7D6T	X-ray structure of Clostridium perfringens sortase C with the C-terminal cell wall sorting motif. 分子名称: Sortase family protein 著者 Kamitori, S, Tamai, E. 登録日 2020-10-01 公開日 2021-06-02 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.68 Å) 主引用文献 X-ray structures of Clostridium perfringens sortase C with C-terminal cell wall sorting motif of LPST demonstrate role of subsite for substrate-binding and structural variations of catalytic site. Biochem.Biophys.Res.Commun., 554, 2021
5NWP	Crystal Structure of the Lectin Domain From the F17-like Adhesin, UclD 分子名称: Adhesin, SULFATE ION 著者 Ruer, S, Remaut, H. 登録日 2017-05-08 公開日 2017-06-21 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.05 Å) 主引用文献 Selective depletion of uropathogenic E. coli from the gut by a FimH antagonist. Nature, 546, 2017
5VQ5	Crystal Structure of the Lectin Domain From the F17-like Adhesin, UclD 分子名称: Adhesin, IODIDE ION 著者 Klein, R.D, Spaulding, C.N, Dodson, K.W, Pinkner, J.S, Hultgren, S.J, Fremont, D. 登録日 2017-05-08 公開日 2017-05-24 最終更新日 2019-12-11 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Selective depletion of uropathogenic E. coli from the gut by a FimH antagonist. Nature, 546, 2017
7Q1V	Arches protomer (trimer of TrwG/VirB8peri) structure from the fully-assembled R388 type IV secretion system determined by cryo-EM. 分子名称: TrwG protein 著者 Mace, K, Vadakkepat, A.K, Lukoyanova, N, Waksman, G. 登録日 2021-10-21 公開日 2022-06-22 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (6.18 Å) 主引用文献 Cryo-EM structure of a type IV secretion system. Nature, 607, 2022
4DJM	Crystal structure of the E. coli chaperone DraB 分子名称: DraB 著者 Dauter, Z, Piatek, R, Dauter, M, Brzuszkiewicz, A. 登録日 2012-02-02 公開日 2013-01-16 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (2.52 Å) 主引用文献 Crystal structure of the uropathogenic Escherichia coli chaperone DraB To be Published
1Z9S	Crystal Structure of the native chaperone:subunit:subunit Caf1M:Caf1:Caf1 complex 分子名称: Chaperone protein Caf1M, F1 capsule antigen 著者 Zavialov, A.V, Tischenko, V.M, Fooks, L.J, Brandsdal, B.O, Aqvist, J, Zav'yalov, V.P, Macintyre, S, Knight, S.D. 登録日 2005-04-04 公開日 2005-06-21 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Resolving the energy paradox of chaperone/usher-mediated fibre assembly Biochem.J., 389, 2005
3DSN	Crystal structure of the complex of the Caf1M chaperone with the mini-fiber of two Caf1 subunits (Caf1:Caf1), carrying the Thr7Phe mutation in the Gd donor strand 分子名称: Chaperone protein caf1M, F1 capsule antigen 著者 Fooks, L.J, Yu, X, Moslehi-Mohebi, E, Tischenko, V, Knight, S.D, MacIntyre, S, Zavialov, A.V. 登録日 2008-07-13 公開日 2009-07-14 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Hydrophobicity and rigidity of binding segments enable CAF1M chaperone to act as assembly catalyst To be Published
3DOS	Crystal structure of the complex of the Caf1M chaperone with the mini-fiber of two Caf1 subunits (Caf1:Caf1), carrying the Thr7Phe and Ala9Val mutations in the Gd donor strand 分子名称: Chaperone protein caf1M, F1 capsule antigen 著者 Fooks, L.J, Yu, X, Moslehi-Mohebi, E, Tischenko, V, Knight, S.D, MacIntyre, S, Zavialov, A.V. 登録日 2008-07-06 公開日 2009-07-14 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Hydrophobicity and rigidity of binding segments enable CAF1M chaperone to act as assembly catalyst TO BE PUBLISHED
3DPB	Crystal structure of the complex of the Caf1M chaperone with the mini-fiber of two Caf1 subunits (Caf1:Caf1), carrying the Ala9Val, Ala11Val, and Leu13Val mutations in the Gd donor strand 分子名称: Chaperone protein caf1M, F1 capsule antigen 著者 Fooks, L.J, Yu, X, Moslehi-Mohebi, E, Tischenko, V, Knight, S.D, MacIntyre, S, Zavialov, A.V. 登録日 2008-07-07 公開日 2009-07-14 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Hydrophobicity and rigidity of binding segments enable CAF1M chaperone to act as assembly catalyst To be published
4B0M	Complex of the Caf1AN usher domain, Caf1M chaperone and Caf1 subunit from Yersinia pestis 分子名称: CHAPERONE PROTEIN CAF1M, F1 CAPSULE ANTIGEN, F1 CAPSULE-ANCHORING PROTEIN 著者 Dubnovitsky, A, Yu, X.D, Pudney, A.F, MacIntyre, S, Knight, S.D, Zavialov, A.V. 登録日 2012-07-03 公開日 2012-09-26 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Allosteric Mechanism Controls Traffic in the Chaperone/Usher Pathway. Structure, 20, 2012
7O43	TrwK/VirB4unbound dimer complex from R388 type IV secretion system determined by cryo-EM. 分子名称: TrwK protein 著者 Vadakkepat, A.K, Mace, K, Lukoyanova, N, Waksman, G. 登録日 2021-04-04 公開日 2022-06-22 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Cryo-EM structure of a type IV secretion system. Nature, 607, 2022
7O3J	O-layer structure (TrwH/VirB7, TrwF/VirB9CTD, TrwE/VirB10CTD) of the outer membrane core complex from the fully-assembled R388 type IV secretion system determined by cryo-EM. 分子名称: TrwE protein, TrwF protein, TrwH protein 著者 Mace, K, Vadakkepat, A.K, Lukoyanova, N, Waksman, G. 登録日 2021-04-01 公開日 2022-06-22 最終更新日 2022-07-20 実験手法 ELECTRON MICROSCOPY (2.6 Å) 主引用文献 Cryo-EM structure of a type IV secretion system. Nature, 607, 2022
7O3V	Stalk complex structure (TrwJ/VirB5-TrwI/VirB6) from the fully-assembled R388 type IV secretion system determined by cryo-EM. 分子名称: TrwI protein, TrwJ protein 著者 Mace, K, Vadakkepat, A.K, Lukoyanova, N, Waksman, G. 登録日 2021-04-03 公開日 2022-06-22 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Cryo-EM structure of a type IV secretion system. Nature, 607, 2022
7O3T	I-layer structure (TrwF/VirB9NTD, TrwE/VirB10NTD) of the outer membrane core complex from the fully-assembled R388 type IV secretion system determined by cryo-EM. 分子名称: TrwE protein, TrwF protein 著者 Mace, K, Vadakkepat, A.K, Lukoyanova, N, Waksman, G. 登録日 2021-04-03 公開日 2022-06-22 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Cryo-EM structure of a type IV secretion system. Nature, 607, 2022

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