PDB: 97814 件ウェブページステータス検索Chemie searchBIRD

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5CR0	Human DNA polymerase lambda L431A mutant- MgdCTP binary and complex with 6 paired DNA 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(P*GP*TP*AP*CP*TP*G)-3'), ... 著者 Liu, M.S, Tsai, M.D. 登録日 2015-07-22 公開日 2016-02-24 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda J.Am.Chem.Soc., 138, 2016
8ST7	Structure of E3 ligase VsHECT bound to ubiquitin 分子名称: E3 ubiquitin-protein ligase SopA-like catalytic domain-containing protein, Ubiquitin, prop-2-en-1-amine 著者 Franklin, T.G, Pruneda, J.N. 登録日 2023-05-09 公開日 2023-07-12 最終更新日 2024-01-03 実験手法 X-RAY DIFFRACTION (1.44 Å) 主引用文献 Bacterial ligases reveal fundamental principles of polyubiquitin specificity. Mol.Cell, 83, 2023
8ST9	Structure of E3 ligase NleL bound to ubiquitin 分子名称: E3 ubiquitin-protein ligase SopA, Ubiquitin, prop-2-en-1-amine 著者 Franklin, T.G, Pruneda, J.N. 登録日 2023-05-09 公開日 2023-07-12 最終更新日 2024-01-03 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Bacterial ligases reveal fundamental principles of polyubiquitin specificity. Mol.Cell, 83, 2023
8ST8	Structure of E3 ligase SopA bound to ubiquitin 分子名称: E3 ubiquitin-protein ligase SopA, Ubiquitin, prop-2-en-1-amine 著者 Franklin, T.G, Pruneda, J.N. 登録日 2023-05-09 公開日 2023-07-12 最終更新日 2024-01-03 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Bacterial ligases reveal fundamental principles of polyubiquitin specificity. Mol.Cell, 83, 2023
1EYV	THE CRYSTAL STRUCTURE OF NUSB FROM MYCOBACTERIUM TUBERCULOSIS 分子名称: N-UTILIZING SUBSTANCE PROTEIN B HOMOLOG, PHOSPHATE ION 著者 Gopal, B, Haire, L.F, Cox, R.A, Colston, M.J, Major, S, Brannigan, J.A, Smerdon, S.J, Dodson, G.G, TB Structural Genomics Consortium (TBSGC) 登録日 2000-05-09 公開日 2000-05-18 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 The crystal structure of NusB from Mycobacterium tuberculosis. Nat.Struct.Biol., 7, 2000
4D61	Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state 分子名称: 18S RRNA, 40S RIBOSOMAL PROTEIN S10, 40S RIBOSOMAL PROTEIN S11, ... 著者 Muhs, M, Hilal, T, Mielke, T, Skabkin, M.A, Sanbonmatsu, K.Y, Pestova, T.V, Spahn, C.M.T. 登録日 2014-11-07 公開日 2015-03-04 最終更新日 2017-08-30 実験手法 ELECTRON MICROSCOPY (9 Å) 主引用文献 Cryo-Em of Ribosomal 80S Complexes with Termination Factors Reveals the Translocated Cricket Paralysis Virus Ires. Mol.Cell, 57, 2015
2CWG	CRYSTALLOGRAPHIC REFINEMENT AND STRUCTURE ANALYSIS OF THE COMPLEX OF WHEAT GERM AGGLUTININ WITH A BIVALENT SIALOGLYCOPEPTIDE FROM GLYCOPHORIN A 分子名称: AGGLUTININ ISOLECTIN 1 (WGA1), N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)]2-acetamido-2-deoxy-alpha-D-glucopyranose, T5 SIALOGLYCOPEPTIDE OF GLYCOPHORIN A 著者 Wright, C.S. 登録日 1993-01-08 公開日 1994-01-31 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystallographic refinement and structure analysis of the complex of wheat germ agglutinin with a bivalent sialoglycopeptide from glycophorin A. J.Mol.Biol., 232, 1993
8Z8P	norbelladine 4'-O-methyltransferase S52M variant complexed with Mg and SAH 分子名称: GLYCEROL, MAGNESIUM ION, Norbelladine 4'-O-methyltransferase, ... 著者 Saw, Y.Y.H, Nakashima, Y, Morita, H. 登録日 2024-04-22 公開日 2024-08-07 実験手法 X-RAY DIFFRACTION (1.68 Å) 主引用文献 Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases Acs Catalysis, 2024
9FCF	Medicago truncatula 5'-ProFAR isomerase (HISN3) D57N mutant in complex with ProFAR 分子名称: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic, CHLORIDE ION, ... 著者 Witek, W, Imiolczyk, B, Ruszkowski, M. 登録日 2024-05-15 公開日 2024-09-04 実験手法 X-RAY DIFFRACTION (2.36 Å) 主引用文献 Structural, kinetic, and evolutionary peculiarities of HISN3, a plant 5'-ProFAR isomerase. Plant Physiol Biochem., 215, 2024
9FCG	Medicago truncatula 5'-ProFAR isomerase (HISN3) D57N mutant in complex with PrFAR 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic, ... 著者 Witek, W, Imiolczyk, B, Ruszkowski, M. 登録日 2024-05-15 公開日 2024-09-04 実験手法 X-RAY DIFFRACTION (1.54 Å) 主引用文献 Structural, kinetic, and evolutionary peculiarities of HISN3, a plant 5'-ProFAR isomerase. Plant Physiol Biochem., 215, 2024
8ZFW	norbelladine 4'-O-methyltransferase S52T Y186F complexed with Mg and SAH 分子名称: GLYCEROL, MAGNESIUM ION, Norbelladine, ... 著者 Saw, Y.Y.H, Nakashima, Y, Morita, H. 登録日 2024-05-08 公開日 2024-08-07 実験手法 X-RAY DIFFRACTION (2.18 Å) 主引用文献 Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases Acs Catalysis, 2024
9C84	X-ray crystal structure of AmpC beta-lactamase with inhibitor 分子名称: 3,5-dichloro-N-(8-fluoroisoquinolin-5-yl)-2-hydroxybenzene-1-sulfonamide, AmpC Beta-lactamase 著者 Liu, F, Shoichet, B.K. 登録日 2024-06-12 公開日 2024-06-19 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Improved correlations with score, hit-rate, and affinity as docking library and testing scale increase To Be Published
9C81	X-ray crystal structure of AmpC beta-lactamase with inhibitor 分子名称: (2R)-2-phenoxy-3-{[(1S,2S,4S)-spiro[bicyclo[2.2.1]heptane-7,1'-cyclopropane]-2-carbonyl]amino}propanoic acid, AmpC Beta-lactamase 著者 Liu, F, Shoichet, B.K, Bassim, V. 登録日 2024-06-11 公開日 2024-06-19 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Improved correlations with score, hit-rate, and affinity as docking library and testing scale increase To Be Published
9C83	X-ray crystal structure of AmpC beta-lactamase with inhibitor 分子名称: AmpC Beta-lactamase, N-[(3M)-3-(5-chloro-1,2,3-thiadiazol-4-yl)phenyl]-5-methyl-3-oxo-2,3-dihydro-1,2-oxazole-4-sulfonamide 著者 Liu, F, Shoichet, B.K. 登録日 2024-06-11 公開日 2024-06-19 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Improved correlations with score, hit-rate, and affinity as docking library and testing scale increase To Be Published
8Z8O	norbelladine 4'-O-methyltransferase Y186F complexed with Mg and SAH 分子名称: GLYCEROL, MAGNESIUM ION, Norbelladine 4'-O-methyltransferase, ... 著者 Saw, Y.Y.H, Nakashima, Y, Morita, H. 登録日 2024-04-22 公開日 2024-08-07 実験手法 X-RAY DIFFRACTION (1.71 Å) 主引用文献 Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases Acs Catalysis, 2024
6QI4	NCS-1 bound to a ligand 分子名称: 2-(1~{H}-indol-3-yl)-~{N}-[(~{E})-(4-nitro-3-oxidanyl-phenyl)methylideneamino]ethanamide, ACETATE ION, CALCIUM ION, ... 著者 Sanchez-Barrena, M.J, Blanco-Gabella, P. 登録日 2019-01-17 公開日 2019-07-17 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.78 Å) 主引用文献 Insights into real-time chemical processes in a calcium sensor protein-directed dynamic library. Nat Commun, 10, 2019
8Z8S	norbelladine 4'-O-methyltransferase S52M Y186F complexed with Mg and SAH 分子名称: GLYCEROL, MAGNESIUM ION, Norbelladine 4'-O-methyltransferase, ... 著者 Saw, Y.Y.H, Nakashima, Y, Morita, H. 登録日 2024-04-22 公開日 2024-08-07 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases Acs Catalysis, 2024
9RUB	CRYSTAL STRUCTURE OF ACTIVATED RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE COMPLEXED WITH ITS SUBSTRATE, RIBULOSE-1,5-BISPHOSPHATE 分子名称: FORMIC ACID, MAGNESIUM ION, RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE, ... 著者 Lundqvist, T, Schneider, G. 登録日 1990-11-28 公開日 1993-01-15 最終更新日 2021-02-24 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal structure of activated ribulose-1,5-bisphosphate carboxylase complexed with its substrate, ribulose-1,5-bisphosphate. J.Biol.Chem., 266, 1991
9END	Crystal structure of Methanopyrus kandleri malate dehydrogenase mutant 3 分子名称: CHLORIDE ION, Malate dehydrogenase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... 著者 Coquille, S, Roche, J, Girard, E, Madern, D. 登録日 2024-03-12 公開日 2024-07-10 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Navigating the conformational landscape of an enzyme. Stabilization of a low populated conformer by evolutionary mutations triggers Allostery into a non-allosteric enzyme. To be published
9C6P	X-ray crystal structure of AmpC beta-lactamase with inhibitor 分子名称: 3-chloro-N-(5-chloro-2-methyl-1,3-benzothiazol-6-yl)-2-hydroxybenzene-1-sulfonamide, AmpC Beta-lactamase 著者 Liu, F, Shoichet, B.K. 登録日 2024-06-08 公開日 2024-06-19 実験手法 X-RAY DIFFRACTION (1.663 Å) 主引用文献 Improved correlations with score, hit-rate, and affinity as docking library and testing scale increase To Be Published
8Z8R	norbelladine 4'-O-methyltransferase S52T complexed with Mg and SAH 分子名称: GLYCEROL, MAGNESIUM ION, Norbelladine 4'-O-methyltransferase, ... 著者 Saw, Y.Y.H, Nakashima, Y, Morita, H. 登録日 2024-04-22 公開日 2024-08-07 実験手法 X-RAY DIFFRACTION (1.79 Å) 主引用文献 Structure-Based Catalytic Mechanism of Amaryllidaceae O-Methyltransferases Acs Catalysis, 2024
9C8J	X-ray crystal structure of AmpC beta-lactamase with inhibitor 分子名称: AmpC Beta-lactamase, N-(1-acetyl-2,3-dihydro-1H-indol-4-yl)-3-chloro-2-hydroxybenzene-1-sulfonamide 著者 Liu, F, Shoichet, B.K. 登録日 2024-06-12 公開日 2024-06-19 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Improved correlations with score, hit-rate, and affinity as docking library and testing scale increase To Be Published
8PFC	Crystal structure of binary complex between Aster yellows witches'-broom phytoplasma effector SAP05 and the zinc finger domain of SPL5 from Arabidopsis thaliana 分子名称: Sequence-variable mosaic (SVM) signal sequence domain-containing protein, Squamosa promoter-binding-like protein 5, ZINC ION 著者 Huang, W, Liu, Q, Maqbool, A, Stevenson, C.E.M, Lawson, D.M, Kamoun, S, Hogenhout, S.A. 登録日 2023-06-15 公開日 2023-07-05 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Bimodular architecture of bacterial effector SAP05 that drives ubiquitin-independent targeted protein degradation. Proc.Natl.Acad.Sci.USA, 120, 2023
8PFD	Crystal structure of binary complex between Aster yellows witches'-broom phytoplasma effector SAP05 and the von Willebrand Factor Type A domain of the proteasomal ubiquitin receptor Rpn10 from Arabidopsis thaliana 分子名称: 26S proteasome non-ATPase regulatory subunit 4 homolog, Sequence-variable mosaic (SVM) signal sequence domain-containing protein 著者 Huang, W, Liu, Q, Maqbool, A, Stevenson, C.E.M, Lawson, D.M, Kamoun, S, Hogenhout, S.A. 登録日 2023-06-15 公開日 2023-07-05 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.17 Å) 主引用文献 Bimodular architecture of bacterial effector SAP05 that drives ubiquitin-independent targeted protein degradation. Proc.Natl.Acad.Sci.USA, 120, 2023
3A1N	Crystal structure of L-Threonine dehydrogenase from Hyperthermophilic Archaeon Thermoplasma volcanium 分子名称: NDP-sugar epimerase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE 著者 Yoneda, K, Sakuraba, H, Ohshima, T. 登録日 2009-04-18 公開日 2010-03-31 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.07 Å) 主引用文献 Crystal Structure of Binary and Ternary Complexes of Archaeal UDP-galactose 4-Epimerase-like L-Threonine Dehydrogenase from Thermoplasma volcanium. J.Biol.Chem., 287, 2012

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