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6VZ0
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BU of 6vz0 by Molmil
C-terminal domain of mouse surfactant protein B crystallized at high pH
分子名称: Pulmonary surfactant-associated protein B, ZINC ION
著者Rapoport, T.A, Bodnar, N.O.
登録日2020-02-27
公開日2020-11-25
最終更新日2021-01-20
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Mechanism of Lamellar Body Formation by Lung Surfactant Protein B.
Mol.Cell, 81, 2021
5YYA
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BU of 5yya by Molmil
Crystal structure of Tandem Tudor Domain of human UHRF1
分子名称: 1,2-ETHANEDIOL, E3 ubiquitin-protein ligase UHRF1, SULFATE ION
著者Kori, S, Defossez, P.A, Arita, K.
登録日2017-12-08
公開日2018-12-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structure of the UHRF1 Tandem Tudor Domain Bound to a Methylated Non-histone Protein, LIG1, Reveals Rules for Binding and Regulation.
Structure, 27, 2019
4ZYN
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BU of 4zyn by Molmil
Crystal Structure of Parkin E3 ubiquitin ligase (linker deletion; delta 86-130)
分子名称: E3 ubiquitin-protein ligase parkin, SULFATE ION, ZINC ION
著者Lilov, A, Sauve, V, Trempe, J.F, Rodionov, D, Wang, J, Gehring, K.
登録日2015-05-21
公開日2015-08-19
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.54 Å)
主引用文献A Ubl/ubiquitin switch in the activation of Parkin.
Embo J., 34, 2015
6EIH
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BU of 6eih by Molmil
The crystal structure of 14-3-3 epsilon in complex with the phosphorylated NELFE peptide
分子名称: 14-3-3 protein epsilon, SER-ILE-SEP-ARG
著者Akutsu, M, Wagner, S.A, Beli, P.
登録日2017-09-19
公開日2018-02-14
最終更新日2019-10-16
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献p38-MK2 signaling axis regulates RNA metabolism after UV-light-induced DNA damage.
Nat Commun, 9, 2018
6FLF
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BU of 6flf by Molmil
Deoxyguanylosuccinate synthase (DgsS) structure at 1.33 Angstrom resolution.
分子名称: Adenylosuccinate synthetase
著者Sleiman, D, Loc'h, J, Haouz, A, Kaminski, P.A.
登録日2018-01-25
公開日2019-06-12
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.33 Å)
主引用文献A third purine biosynthetic pathway encoded by aminoadenine-based viral DNA genomes.
Science, 372, 2021
6FM1
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BU of 6fm1 by Molmil
Deoxyguanylosuccinate synthase (DgsS) quaternary structure with ATPanddGMP at 2.3 Angstrom resolution
分子名称: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Adenylosuccinate synthetase, ...
著者Sleiman, D, Loc'h, J, Haouz, A, Kaminski, P.A.
登録日2018-01-29
公開日2019-06-12
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献A third purine biosynthetic pathway encoded by aminoadenine-based viral DNA genomes.
Science, 372, 2021
6TNH
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BU of 6tnh by Molmil
Deoxyguanylosuccinate synthase (DgsS) quaternary structure with AMPPcP, dGMP, Asp, Magnesium at 2.21 Angstrom resolution
分子名称: 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE, ASPARTIC ACID, Adenylosuccinate synthetase, ...
著者Sleiman, D, Loc'h, J, Haouz, A, Kaminski, P.A.
登録日2019-12-08
公開日2020-12-16
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.21 Å)
主引用文献A third purine biosynthetic pathway encoded by aminoadenine-based viral DNA genomes.
Science, 372, 2021
6BRP
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BU of 6brp by Molmil
F-box protein form 2
分子名称: F-box/LRR-repeat MAX2 homolog, SKP1-like protein 1A
著者Shabek, N, Zheng, N, Mao, H, Hinds, T.R, Ticchiarelli, F, Leyser, O.
登録日2017-11-30
公開日2018-11-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.39 Å)
主引用文献Structural plasticity of D3-D14 ubiquitin ligase in strigolactone signalling.
Nature, 563, 2018
6B40
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BU of 6b40 by Molmil
BbRAGL-3'TIR synaptic complex with nicked DNA refined with C2 symmetry
分子名称: 31TIR intact strand, 31TIR pre-nicked strand of flanking DNA, 31TIR pre-nicked strand of signal DNA, ...
著者Zhang, Y, Cheng, T.C, Xiong, Y, Schatz, D.G.
登録日2017-09-25
公開日2019-03-20
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献Transposon molecular domestication and the evolution of the RAG recombinase.
Nature, 569, 2019
2N9E
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BU of 2n9e by Molmil
Structure of SUMO-2 bound to phosphorylated RAP80 SIM
分子名称: BRCA1-A complex subunit RAP80, Small ubiquitin-related modifier 2
著者Anamika, A, Spyracopoulos, L.
登録日2015-11-15
公開日2016-01-20
最終更新日2016-03-23
実験手法SOLUTION NMR
主引用文献Molecular Basis for Phosphorylation-dependent SUMO Recognition by the DNA Repair Protein RAP80.
J.Biol.Chem., 291, 2016
2M6N
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BU of 2m6n by Molmil
3D solution structure of EMI1 (Early Mitotic Inhibitor 1)
分子名称: F-box only protein 5, ZINC ION
著者Frye, J.J, Brown, N.G, Petzold, G, Watson, E.R, Royappa, G.R, Nourse, A, Jarvis, M, Kriwacki, R.W, Peters, J, Stark, H, Schulman, B.A.
登録日2013-04-06
公開日2013-05-29
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Electron microscopy structure of human APC/C(CDH1)-EMI1 reveals multimodal mechanism of E3 ligase shutdown.
Nat.Struct.Mol.Biol., 20, 2013
6H09
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BU of 6h09 by Molmil
HIV capsid hexamer with IP6 ligand
分子名称: Gag polyprotein, INOSITOL HEXAKISPHOSPHATE
著者James, L.C.
登録日2018-07-06
公開日2018-08-15
最終更新日2020-10-07
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献IP6 is an HIV pocket factor that prevents capsid collapse and promotes DNA synthesis.
Elife, 7, 2018
6FM0
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BU of 6fm0 by Molmil
Deoxyguanylosuccinate synthase (DgsS) and ATP structure at 1.7 Angstrom resolution
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Adenylosuccinate synthetase
著者Sleiman, D, Loc'h, J, Haouz, A, Kaminski, P.A.
登録日2018-01-29
公開日2019-06-12
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献A third purine biosynthetic pathway encoded by aminoadenine-based viral DNA genomes.
Science, 372, 2021
3MUD
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BU of 3mud by Molmil
Structure of the Tropomyosin Overlap Complex from Chicken Smooth Muscle
分子名称: 1,2-ETHANEDIOL, DNA repair protein XRCC4,Tropomyosin alpha-1 chain, SULFATE ION, ...
著者Klenchin, V.A, Frye, J, Rayment, I.
登録日2010-05-02
公開日2010-06-23
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of the tropomyosin overlap complex from chicken smooth muscle: insight into the diversity of N-terminal recognition .
Biochemistry, 49, 2010
4WB7
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BU of 4wb7 by Molmil
Crystal structure of a chimeric fusion of human DnaJ (Hsp40) and cAMP-dependent protein kinase A (catalytic alpha subunit)
分子名称: ADENOSINE-5'-TRIPHOSPHATE, DnaJ homolog subfamily B member 1,cAMP-dependent protein kinase catalytic subunit alpha, PKI (5-24), ...
著者Cheung, J, Ginter, C, Cassidy, M, Franklin, M.C, Rudolph, M.J, Hendrickson, W.A.
登録日2014-09-02
公開日2015-01-21
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural insights into mis-regulation of protein kinase A in human tumors.
Proc.Natl.Acad.Sci.USA, 112, 2015
5YZ1
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BU of 5yz1 by Molmil
Crystal structure of human Archease
分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Protein archease
著者Duan, S.Y, Li, J.X.
登録日2017-12-11
公開日2019-01-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Crystal structure of human archease, a key cofactor of tRNA splicing ligase complex.
Int.J.Biochem.Cell Biol., 122, 2020
2KNB
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BU of 2knb by Molmil
Solution NMR structure of the parkin Ubl domain in complex with the endophilin-A1 SH3 domain
分子名称: E3 ubiquitin-protein ligase parkin, Endophilin-A1
著者Trempe, J, Guennadi, K, Edna, C.M, Kalle, G.
登録日2009-08-20
公開日2009-12-22
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献SH3 domains from a subset of BAR proteins define a Ubl-binding domain and implicate parkin in synaptic ubiquitination.
Mol.Cell, 36, 2009
6VZE
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BU of 6vze by Molmil
C-terminal domain of mouse surfactant protein B crystallized at low pH
分子名称: Pulmonary surfactant-associated protein B, SULFATE ION
著者Rapoport, T.A, Bodnar, N.O.
登録日2020-02-28
公開日2020-11-25
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Mechanism of Lamellar Body Formation by Lung Surfactant Protein B.
Mol.Cell, 81, 2021
8IEJ
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BU of 8iej by Molmil
RNF20-RNF40/hRad6A-Ub/nucleosome complex
分子名称: DNA (147-MER), E3 ubiquitin-protein ligase BRE1A, E3 ubiquitin-protein ligase BRE1B, ...
著者Ai, H, Deng, Z, Sun, M, Du, Y, Pan, M, Liu, L.
登録日2023-02-15
公開日2023-09-06
最終更新日2023-09-20
実験手法ELECTRON MICROSCOPY (3.12 Å)
主引用文献Mechanistic insights into nucleosomal H2B monoubiquitylation mediated by yeast Bre1-Rad6 and its human homolog RNF20/RNF40-hRAD6A.
Mol.Cell, 83, 2023
7ZSA
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BU of 7zsa by Molmil
Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome and NTP (complex B)
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Wang, H, Cramer, P.
登録日2022-05-06
公開日2022-11-16
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structures of transcription preinitiation complex engaged with the +1 nucleosome.
Nat.Struct.Mol.Biol., 30, 2023
7ZS9
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BU of 7zs9 by Molmil
Yeast RNA polymerase II transcription pre-initiation complex with the +1 nucleosome (complex A)
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ...
著者Wang, H, Cramer, P.
登録日2022-05-06
公開日2022-11-16
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structures of transcription preinitiation complex engaged with the +1 nucleosome.
Nat.Struct.Mol.Biol., 30, 2023
8IEG
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BU of 8ieg by Molmil
Bre1(mRBD-RING)/Rad6-Ub/nucleosome complex
分子名称: DNA (147-MER), E3 ubiquitin-protein ligase BRE1, Histone H2A type 1-B/E, ...
著者Ai, H, Deng, Z, Pan, M, Liu, L.
登録日2023-02-15
公開日2023-09-06
最終更新日2023-09-20
実験手法ELECTRON MICROSCOPY (3.44 Å)
主引用文献Mechanistic insights into nucleosomal H2B monoubiquitylation mediated by yeast Bre1-Rad6 and its human homolog RNF20/RNF40-hRAD6A.
Mol.Cell, 83, 2023
8IUE
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BU of 8iue by Molmil
RNA polymerase III pre-initiation complex melting complex 1
分子名称: DNA (74-MER), DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, ...
著者Hou, H, Jin, Q, Ren, Y, Wang, Q, Xu, Y.
登録日2023-03-24
公開日2023-05-24
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献Structure of the SNAPc-bound RNA polymerase III preinitiation complex.
Cell Res., 33, 2023
8IUH
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BU of 8iuh by Molmil
RNA polymerase III pre-initiation complex open complex 1
分子名称: DNA (81-MER), DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, ...
著者Hou, H, Jin, Q, Ren, Y, Wang, Q, Xu, Y.
登録日2023-03-24
公開日2023-05-24
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structure of the SNAPc-bound RNA polymerase III preinitiation complex.
Cell Res., 33, 2023
5IYA
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BU of 5iya by Molmil
Human core-PIC in the closed state
分子名称: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB10, DNA-directed RNA polymerase II subunit RPB11-a, ...
著者He, Y, Yan, C, Fang, J, Inouye, C, Tjian, R, Ivanov, I, Nogales, E.
登録日2016-03-24
公開日2016-05-18
最終更新日2019-11-20
実験手法ELECTRON MICROSCOPY (5.4 Å)
主引用文献Near-atomic resolution visualization of human transcription promoter opening.
Nature, 533, 2016

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