PDB: 63 件ウェブページステータス検索Chemie searchBIRD

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1EHI	D-ALANINE:D-LACTATE LIGASE (LMDDL2) OF VANCOMYCIN-RESISTANT LEUCONOSTOC MESENTEROIDES 分子名称: 1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID, ADENOSINE-5'-DIPHOSPHATE, D-ALANINE:D-LACTATE LIGASE, ... 著者 Kuzin, A.P, Sun, T, Jorczak-Baillass, J, Healy, V.L, Walsh, C.T, Knox, J.R. 登録日 2000-02-21 公開日 2000-05-23 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.38 Å) 主引用文献 Enzymes of vancomycin resistance: the structure of D-alanine-D-lactate ligase of naturally resistant Leuconostoc mesenteroides. Structure Fold.Des., 8, 2000
5C1P	Crystal structure of ADP and D-alanyl-D-alanine complexed D-alanine-D-alanine ligase(DDL) from Yersinia pestis 分子名称: ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, D-ALANINE, ... 著者 Tran, H.T, Kang, L.W, Hong, M.K, Ngo, H.P.T. 登録日 2015-06-15 公開日 2016-03-02 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structure of D-alanine-D-alanine ligase from Yersinia pestis: nucleotide phosphate recognition by the serine loop. Acta Crystallogr D Struct Biol, 72, 2016
6U1G	Thermus thermophilus D-alanine-D-alanine ligase in complex with ATP, D-alanine-D-alanine, Mg2+ and Cs+ 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CESIUM ION, D-ALANINE, ... 著者 Pederick, J.L, Bruning, J.B. 登録日 2019-08-15 公開日 2020-05-06 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 d-Alanine-d-alanine ligase as a model for the activation of ATP-grasp enzymes by monovalent cations. J.Biol.Chem., 295, 2020
2PVP	Crystal structure of D-Alanine-D-Alanine Ligase from Helicobacter pylori 分子名称: D-alanine-D-alanine ligase 著者 Wu, D, Zhang, L, Jiang, H, Shen, X. 登録日 2007-05-10 公開日 2008-04-01 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Enzymatic characterization and crystal structure analysis of the D-alanine-D-alanine ligase from Helicobacter pylori. Proteins, 72, 2008
8EVZ	DdlB from Pseudomonas aeruginosa PAO1 in complex with ADP and phosphorylated D-cycloserine 分子名称: ADENOSINE-5'-DIPHOSPHATE, D-alanine--D-alanine ligase B, MAGNESIUM ION, ... 著者 Pederick, J.L, Woolman, J.C, Bruning, J.B. 登録日 2022-10-21 公開日 2023-08-30 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Comparative functional and structural analysis of Pseudomonas aeruginosa d-alanine-d-alanine ligase isoforms as prospective antibiotic targets. Febs J., 290, 2023
2I8C	Allosteric inhibition of Staphylococcus aureus D-alanine:D-alanine ligase revealed by crystallographic studies 分子名称: ADENOSINE-5'-DIPHOSPHATE, D-alanine-D-alanine ligase, MAGNESIUM ION, ... 著者 Liu, S, Chang, J.S, Herberg, J.T, Horng, M, Tomich, P.K, Lin, A.H, Marotti, K.R. 登録日 2006-09-01 公開日 2006-09-26 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.46 Å) 主引用文献 Allosteric inhibition of Staphylococcus aureus D-alanine:D-alanine ligase revealed by crystallographic studies. Proc.Natl.Acad.Sci.Usa, 103, 2006
3R23	Crystal Structure of D-alanine--D-Alanine Ligase from Bacillus anthracis 分子名称: 1,2-ETHANEDIOL, D-alanine--D-alanine ligase 著者 Kim, Y, Mulligan, R, Hasseman, J, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) 登録日 2011-03-12 公開日 2011-03-30 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal Structure of D-alanine--D-Alanine Ligase from Bacillus anthracis To be Published
1E4E	D-alanyl-D-lacate ligase 分子名称: 1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID, ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, ... 著者 Roper, D.I. 登録日 2000-07-03 公開日 2001-06-28 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 The molecular basis of vancomycin resistance in clinically relevant Enterococci: crystal structure of D-alanyl-D-lactate ligase (VanA). Proc. Natl. Acad. Sci. U.S.A., 97, 2000
5C1O	Crystal structure of AMP-PNP complexed D-alanine-D-alanine ligase(DDL) from Yersinia pestis 分子名称: D-alanine--D-alanine ligase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... 著者 Tran, H.T, Kang, L.W, Hong, M.K. 登録日 2015-06-15 公開日 2016-03-02 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structure of D-alanine-D-alanine ligase from Yersinia pestis: nucleotide phosphate recognition by the serine loop. Acta Crystallogr D Struct Biol, 72, 2016
2YZN	Crystal structure of D-alanine:D-Alanine Ligase with AMPPNP from Thermus thermophilus HB8. 分子名称: D-alanine-D-alanine ligase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER 著者 Kitamuta, Y, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-05-06 公開日 2007-11-06 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Crystal structure of D-alanine:D-Alanine Ligase with AMPPNP from Thermus thermophilus HB8 To be Published
3V4Z	D-alanine--D-alanine ligase from Yersinia pestis 分子名称: D-alanine--D-alanine ligase, DI(HYDROXYETHYL)ETHER, TRIETHYLENE GLYCOL 著者 Osipiuk, J, Nocek, B, Mulligan, R, Papazisi, L, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) 登録日 2011-12-15 公開日 2011-12-28 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.69 Å) 主引用文献 D-alanine--D-alanine ligase from Yersinia pestis. To be Published
6LL9	Crystal structure of D-alanine-D-alanine ligase from Aeromonas hydrophila 分子名称: D-ALANINE, D-alanine--D-alanine ligase 著者 Zhang, H. 登録日 2019-12-22 公開日 2020-07-15 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Insights into the Inhibition ofAeromonas hydrophilad-Alanine-d-Alanine Ligase by Integration of Kinetics and Structural Analysis. J.Agric.Food Chem., 68, 2020
5DMX	Crystal structure of D-alanine-D-alanine ligase from Acinetobacter baumannii, space group p212121 分子名称: D-alanine--D-alanine ligase 著者 Huynh, K.H, Hong, M.K, Kang, L.W. 登録日 2015-09-09 公開日 2016-08-17 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.81 Å) 主引用文献 The crystal structure of the D-alanine-D-alanine ligase from Acinetobacter baumannii suggests a flexible conformational change in the central domain before nucleotide binding J. Microbiol., 53, 2015

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