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2YYR
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BU of 2yyr by Molmil
Structural analysis of PHD domain of Pygopus complexed with trimethylated histone H3 peptide
分子名称: H3K4Me3 peptide, Pygopus homolog 1, ZINC ION
著者Nakamura, Y, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-01
公開日2008-05-06
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural analysis of PHD domain of Pygopus complexed with trimethylated histone H3 peptide
To be Published
5TDR
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BU of 5tdr by Molmil
Set3 PHD finger in complex with histone H3K4me2
分子名称: Histone H3, SET domain-containing protein 3, SODIUM ION, ...
著者Andrews, F.H, Ali, M, Kutateladze, T.G.
登録日2016-09-19
公開日2016-11-02
最終更新日2017-06-28
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献Structural Insight into Recognition of Methylated Histone H3K4 by Set3.
J. Mol. Biol., 429, 2017
3LQH
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BU of 3lqh by Molmil
Crystal structure of MLL1 PHD3-Bromo in the free form
分子名称: Histone-lysine N-methyltransferase MLL, ZINC ION
著者Wang, Z, Patel, D.J.
登録日2010-02-09
公開日2010-07-07
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献Pro isomerization in MLL1 PHD3-bromo cassette connects H3K4me readout to CyP33 and HDAC-mediated repression.
Cell(Cambridge,Mass.), 141, 2010
3LQJ
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BU of 3lqj by Molmil
Crystal structure of MLL1 PHD3-Bromo complexed with H3(1-9)K4me3 peptide
分子名称: Histone H3, MLL1 PHD3-Bromo, ZINC ION
著者Wang, Z, Patel, D.J.
登録日2010-02-09
公開日2010-07-07
最終更新日2017-07-26
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Pro isomerization in MLL1 PHD3-bromo cassette connects H3K4me readout to CyP33 and HDAC-mediated repression.
Cell(Cambridge,Mass.), 141, 2010
3LQI
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BU of 3lqi by Molmil
Crystal structure of MLL1 PHD3-Bromo complexed with H3(1-9)K4me2 peptide
分子名称: Histone H3, MLL1 PHD3-Bromo, ZINC ION
著者Wang, Z, Patel, D.J.
登録日2010-02-09
公開日2010-07-07
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献Pro isomerization in MLL1 PHD3-bromo cassette connects H3K4me readout to CyP33 and HDAC-mediated repression.
Cell(Cambridge,Mass.), 141, 2010
5U2J
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BU of 5u2j by Molmil
MORF double PHD finger (DPF) in complex with histone H3K14bu
分子名称: Histone H3K14bu, Histone acetyltransferase KAT6B, ZINC ION
著者Andrews, F.H, Klein, B.J, Kutateladze, T.G.
登録日2016-11-30
公開日2017-04-12
最終更新日2017-04-19
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Recognition of Histone H3K14 Acylation by MORF.
Structure, 25, 2017
6FAP
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BU of 6fap by Molmil
Crystal structure of human BAZ2A PHD zinc finger in complex with Fr23
分子名称: Bromodomain adjacent to zinc finger domain protein 2A, GLYCEROL, PHOSPHATE ION, ...
著者Amato, A, Lucas, X, Bortoluzzi, A, Wright, D, Ciulli, A.
登録日2017-12-16
公開日2018-03-21
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Targeting Ligandable Pockets on Plant Homeodomain (PHD) Zinc Finger Domains by a Fragment-Based Approach.
ACS Chem. Biol., 13, 2018
6FKP
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BU of 6fkp by Molmil
Crystal structure of BAZ2A PHD zinc finger in complex with H3 10-mer AA mutant peptide
分子名称: ALA-ARG-THR-ALA-ALA-THR-ALA-ARG, Bromodomain adjacent to zinc finger domain protein 2A, GLYCEROL, ...
著者Amato, A, Lucas, X, Bortoluzzi, A, Wright, D, Ciulli, A.
登録日2018-01-24
公開日2018-03-21
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Targeting Ligandable Pockets on Plant Homeodomain (PHD) Zinc Finger Domains by a Fragment-Based Approach.
ACS Chem. Biol., 13, 2018
6FI0
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BU of 6fi0 by Molmil
Crystal structure of BAZ2A PHD zinc finger in complex with Fr 19
分子名称: 2-azanyl-1-(6,7-dihydro-4~{H}-thieno[3,2-c]pyridin-5-yl)ethanone, Bromodomain adjacent to zinc finger domain protein 2A, GLYCEROL, ...
著者Amato, A, Lucas, X, Bortoluzzi, A, Wright, D, Ciulli, A.
登録日2018-01-16
公開日2018-03-21
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Targeting Ligandable Pockets on Plant Homeodomain (PHD) Zinc Finger Domains by a Fragment-Based Approach.
ACS Chem. Biol., 13, 2018
6FI1
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BU of 6fi1 by Molmil
Crystal structure of human BAZ2B PHD zinc finger in complex with Fr23
分子名称: Bromodomain adjacent to zinc finger domain protein 2B, ZINC ION, ~{N}-(4-aminophenyl)-2-azanyl-ethanamide
著者Amato, A, Lucas, X, Bortoluzzi, A, Wright, D, Ciulli, A.
登録日2018-01-16
公開日2018-03-21
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Targeting Ligandable Pockets on Plant Homeodomain (PHD) Zinc Finger Domains by a Fragment-Based Approach.
ACS Chem. Biol., 13, 2018
6FHU
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BU of 6fhu by Molmil
Crystal structure of BAZ2A PHD zinc finger in complex with H3 3-mer peptide
分子名称: ALA-ARG-TAM, Bromodomain adjacent to zinc finger domain protein 2A, GLYCEROL, ...
著者Amato, A, Lucas, X, Bortoluzzi, A, Wright, D, Ciulli, A.
登録日2018-01-15
公開日2018-03-21
最終更新日2018-05-02
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Targeting Ligandable Pockets on Plant Homeodomain (PHD) Zinc Finger Domains by a Fragment-Based Approach.
ACS Chem. Biol., 13, 2018
6FHQ
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BU of 6fhq by Molmil
Crystal structure of human BAZ2B PHD zinc finger in complex with Fr 21
分子名称: 2-azanyl-~{N}-(1,3-thiazol-2-yl)ethanamide, Bromodomain adjacent to zinc finger domain protein 2B, ZINC ION
著者Amato, A, Lucas, X, Bortoluzzi, A, Wright, D, Ciulli, A.
登録日2018-01-15
公開日2018-03-21
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Targeting Ligandable Pockets on Plant Homeodomain (PHD) Zinc Finger Domains by a Fragment-Based Approach.
ACS Chem. Biol., 13, 2018
5VAB
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BU of 5vab by Molmil
Crystal structure of ATXR5 PHD domain in complex with histone H3
分子名称: ATXR5 PHD domain, Histone H3 peptide, ZINC ION
著者Bergamin, E, Sarvan, S, Malette, J, Eram, M, Yeung, S, Mongeon, V, Joshi, M, Brunzelle, J.S, Michaels, S.D, Blais, A, Vedadi, M, Couture, J.-F.
登録日2017-03-24
公開日2017-04-19
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.702 Å)
主引用文献Molecular basis for the methylation specificity of ATXR5 for histone H3.
Nucleic Acids Res., 45, 2017
5VDC
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BU of 5vdc by Molmil
Crystal structure of the human DPF2 tandem PHD finger domain
分子名称: 1,2-ETHANEDIOL, GLYCEROL, ZINC ION, ...
著者Huber, F.M, Davenport, A.M, Hoelz, A.
登録日2017-04-01
公開日2017-05-24
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Histone-binding of DPF2 mediates its repressive role in myeloid differentiation.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5WLE
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BU of 5wle by Molmil
Crystal structure of the PPS PHD finger in complex with H3K4me3
分子名称: H3K4me3 Peptide, Protein partner of snf, isoform A, ...
著者Klein, B.J, Kutateladze, T.G.
登録日2017-07-26
公開日2017-10-04
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.952 Å)
主引用文献A Unique pH-Dependent Recognition of Methylated Histone H3K4 by PPS and DIDO.
Structure, 25, 2017
5WLF
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BU of 5wlf by Molmil
Crystal structure of the apo PPS PHD finger
分子名称: GLYCEROL, Protein partner of snf, isoform A, ...
著者Klein, B.J, Kutateladze, T.G.
登録日2017-07-26
公開日2017-10-04
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献A Unique pH-Dependent Recognition of Methylated Histone H3K4 by PPS and DIDO.
Structure, 25, 2017
3T6R
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BU of 3t6r by Molmil
Structure of UHRF1 in complex with unmodified H3 N-terminal tail
分子名称: E3 ubiquitin-protein ligase UHRF1, Histone H3.1t N-terminal peptide, MAGNESIUM ION, ...
著者Xie, S, Jakoncic, J, Qian, C.M.
登録日2011-07-29
公開日2011-11-23
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献UHRF1 double tudor domain and the adjacent PHD finger act together to recognize K9me3-containing histone H3 tail
J.Mol.Biol., 415, 2012
3SOU
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BU of 3sou by Molmil
Structure of UHRF1 PHD finger in complex with histone H3 1-9 peptide
分子名称: E3 ubiquitin-protein ligase UHRF1, Histone H3, ZINC ION
著者Rajakumara, E, Patel, D.J.
登録日2011-06-30
公開日2011-08-03
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.8001 Å)
主引用文献PHD Finger Recognition of Unmodified Histone H3R2 Links UHRF1 to Regulation of Euchromatic Gene Expression.
Mol.Cell, 43, 2011
3SOW
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BU of 3sow by Molmil
Structure of UHRF1 PHD finger in complex with histone H3K4me3 1-9 peptide
分子名称: E3 ubiquitin-protein ligase UHRF1, Histone H3, ZINC ION
著者Rajakumara, E, Patel, D.J.
登録日2011-06-30
公開日2011-08-03
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.9501 Å)
主引用文献PHD Finger Recognition of Unmodified Histone H3R2 Links UHRF1 to Regulation of Euchromatic Gene Expression.
Mol.Cell, 43, 2011
3SOX
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BU of 3sox by Molmil
Structure of UHRF1 PHD finger in the free form
分子名称: E3 ubiquitin-protein ligase UHRF1, ZINC ION
著者Rajakumara, E, Patel, D.J.
登録日2011-06-30
公開日2011-08-03
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.6501 Å)
主引用文献PHD Finger Recognition of Unmodified Histone H3R2 Links UHRF1 to Regulation of Euchromatic Gene Expression.
Mol.Cell, 43, 2011
3SHB
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BU of 3shb by Molmil
Crystal Structure of PHD Domain of UHRF1
分子名称: E3 ubiquitin-protein ligase UHRF1, Histone H3 peptide, ZINC ION
著者Hu, L, Li, Z, Wang, P, Lin, Y, Xu, Y.
登録日2011-06-16
公開日2011-08-24
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of PHD domain of UHRF1 and insights into recognition of unmodified histone H3 arginine residue 2.
Cell Res., 2011
2RO1
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BU of 2ro1 by Molmil
NMR Solution Structures of Human KAP1 PHD finger-bromodomain
分子名称: Transcription intermediary factor 1-beta, ZINC ION
著者Zeng, L, Yap, K.L, Ivanov, A.V, Wang, X, Mujtaba, S, Plotnikova, O, Rauscher, F.J.
登録日2008-03-04
公開日2008-05-20
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural insights into human KAP1 PHD finger-bromodomain and its role in gene silencing
Nat.Struct.Mol.Biol., 15, 2008
2RSD
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BU of 2rsd by Molmil
Solution structure of the plant homeodomain (PHD) of the E3 SUMO ligase Siz1 from rice
分子名称: E3 SUMO-protein ligase SIZ1, ZINC ION
著者Shindo, H, Tsuchiya, W, Suzuki, R, Yamazaki, T.
登録日2012-01-12
公開日2012-08-15
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献PHD finger of the SUMO ligase Siz/PIAS family in rice reveals specific binding for methylated histone H3 at lysine 4 and arginine 2
Febs Lett., 586, 2012
2VPG
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BU of 2vpg by Molmil
Decoding of methylated histone H3 tail by the Pygo-BCL9 Wnt signaling complex
分子名称: B-CELL CLL/LYMPHOMA 9 PROTEIN, GLYCEROL, HISTONE H3 TAIL, ...
著者Fiedler, M, Sanchez-Barrena, M.J, Nekrasov, M, Mieszczanek, J, Rybin, V, Muller, J, Bienz, M, Evans, P.
登録日2008-02-27
公開日2008-06-17
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Decoding of Methylated Histone H3 Tail by the Pygo- Bcl9 Wnt Signaling Complex.
Mol.Cell, 30, 2008
2VPB
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BU of 2vpb by Molmil
Decoding of methylated histone H3 tail by the Pygo-BCL9 Wnt signaling complex
分子名称: B-CELL CLL/LYMPHOMA 9 PROTEIN, PYGOPUS HOMOLOG 1, SODIUM ION, ...
著者Fiedler, M, Sanchez-Barrena, M.J, Nekrasov, M, Mieszczanek, J, Rybin, V, Muller, J, Evans, P, Bienz, M.
登録日2008-02-27
公開日2008-06-17
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Decoding of Methylated Histone H3 Tail by the Pygo- Bcl9 Wnt Signaling Complex.
Mol.Cell, 30, 2008

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