PDB: 2049 件ウェブページステータス検索Chemie searchBIRD

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6IR1	Crystal structure of red fluorescent protein mCherry complexed with the nanobody LaM4 at 1.9 Angstron resolution 分子名称: MCherry fluorescent protein, mCherry's nanobody LaM4 著者 Ding, Y, Wang, Z.Y, Hu, R.T, Chen, X. 登録日 2018-11-09 公開日 2019-11-13 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (1.919 Å) 主引用文献 Structural insights into the binding of nanobodies LaM2 and LaM4 to the red fluorescent protein mCherry. Protein Sci., 30, 2021
1AK2	ADENYLATE KINASE ISOENZYME-2 分子名称: ADENYLATE KINASE ISOENZYME-2, SULFATE ION 著者 Schlauderer, G.J, Schulz, G.E. 登録日 1995-12-29 公開日 1996-06-10 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 The structure of bovine mitochondrial adenylate kinase: comparison with isoenzymes in other compartments. Protein Sci., 5, 1996
6UHN	Crystal Structure of C148 mGFP-cDNA-1 分子名称: C148 mGFP-cDNA-1, UNKNOWN LIGAND 著者 Winegar, P.W, Hayes, O.G, McMillan, J.R, Figg, C.A, Focia, P.J, Mirkin, C.A. 登録日 2019-09-27 公開日 2020-03-18 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 DNA-Directed Protein Packing within Single Crystals. Chem, 6, 2020
5OOZ	XFEL structure of the on state of a reversibly photoswitching fluorescent protein determined using the grease injection method 分子名称: Green to red photoconvertible GFP-like protein EosFP 著者 Hutchison, C.D.M, Cordon-Preciado, V, Morgan, R.M.L, van Thor, J.J. 登録日 2017-08-09 公開日 2017-12-06 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 X-ray Free Electron Laser Determination of Crystal Structures of Dark and Light States of a Reversibly Photoswitching Fluorescent Protein at Room Temperature. Int J Mol Sci, 18, 2017
7RRK	Crystal structure of fast switching M159E mutant of fluorescent protein Dronpa (Dronpa2) 分子名称: Fluorescent protein Dronpa 著者 Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G. 登録日 2021-08-09 公開日 2021-10-13 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.929 Å) 主引用文献 Energetic Basis and Design of Enzyme Function Demonstrated Using GFP, an Excited-State Enzyme. J.Am.Chem.Soc., 144, 2022
7SAL	Crystal Structure of LaM6 Nanobody bound to mCherry 分子名称: GLYCEROL, LaM6, mCherry 著者 Cong, A.T.Q, Schellenberg, M.J. 登録日 2021-09-22 公開日 2022-09-14 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 High-efficiency recombinant protein purification using mCherry and YFP nanobody affinity matrices. Protein Sci., 31, 2022
6TA7	CRYSTAL STRUCTURE OF HUMAN G3BP1-NTF2 IN COMPLEX WITH HUMAN CAPRIN1-DERIVED SOLOMON MOTIF 分子名称: CHLORIDE ION, Caprin-1, Ras GTPase-activating protein-binding protein 1, ... 著者 Schulte, T, Achour, A, Panas, M.D, McInerney, G.M. 登録日 2019-10-29 公開日 2021-05-12 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 Caprin-1 binding to the critical stress granule protein G3BP1 is regulated by pH Biorxiv, 2021
7A8A	rsGreen0.7-K206A-F145Q partially in the green-off state 分子名称: Green fluorescent protein 著者 De Zitter, E, Dedecker, P, Van Meervelt, L. 登録日 2020-08-30 公開日 2021-02-17 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 Structure-Function Dataset Reveals Environment Effects within a Fluorescent Protein Model System*. Angew.Chem.Int.Ed.Engl., 60, 2021
6QUI	GHK tagged GFP variant at 17Kev 分子名称: COPPER (II) ION, GLYCEROL, Green fluorescent protein, ... 著者 Huyton, T, Gorlich, D. 登録日 2019-02-27 公開日 2020-05-27 最終更新日 2022-12-07 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 The copper(II)-binding tripeptide GHK, a valuable crystallization and phasing tag for macromolecular crystallography. Acta Crystallogr D Struct Biol, 76, 2020
2O2B	Spectroscopic and Structural Study of the Heterotropic Linkage between Halide and Proton Ion Binding to Gfp Proteins: E2(GFP)-I Complex 分子名称: Green fluorescent protein, IODIDE ION 著者 Garau, G. 登録日 2006-11-29 公開日 2007-05-15 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 Spectroscopic and Structural Study of Proton and Halide Ion Cooperative Binding to GFP. Biophys.J., 93, 2007
7UK4	KS-AT di-domain of mycobacterial Pks13 with endogenous KS ligand bound 分子名称: Polyketide synthase PKS13, UNKNOWN LIGAND 著者 Kim, S.K, Dickinson, M.S, Finer-Moore, J.S, Rosenberg, O.S, Stroud, R.M. 登録日 2022-03-31 公開日 2023-02-15 最終更新日 2023-03-29 実験手法 ELECTRON MICROSCOPY (1.94 Å) 主引用文献 Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13. Nat.Struct.Mol.Biol., 30, 2023
3EEO	M. HhaI co-crystallized with synthetic dsDNA containing a propane diol in place of the deoxycytidine residue targeted for methylation. 分子名称: 5'-D(P*DCP*DCP*DAP*DTP*DGP*DCP*DGP*DCP*DTP*DGP*DAP*DC)-3', 5'-D(P*DGP*DTP*DCP*DAP*DGP*(PDI)P*DGP*DCP*DAP*DTP*DGP*DG)-3', Modification methylase HhaI, ... 著者 Porta, J.C, Christman, J.K, Borgstahl, G.E.O. 登録日 2008-09-05 公開日 2010-03-02 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 M. HhaI co-crystallized with synthetic dsDNA containing a propane diol in place of the deoxycytidine residue targeted for methylation. To be Published
4JGE	Crystal structure of red fluorescent gene-engineered variant with improved folding - lanRFP_delS83 (Branchiostoma lanceolatum) 分子名称: GLYCEROL, Red fluorescent protein blFP-R5 著者 Pletnev, V.Z, Pletneva, N.V, Pletnev, S.V. 登録日 2013-03-01 公開日 2013-09-18 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 Structure of the red fluorescent protein from a lancelet (Branchiostoma lanceolatum): a novel GYG chromophore covalently bound to a nearby tyrosine. Acta Crystallogr.,Sect.D, 69, 2013
2POX	Dark state structure of the reversibly switchable fluorescent protein Dronpa 分子名称: Fluorescent protein Dronpa 著者 Trowitzsch, S, Weber, G, Wahl, M.C. 登録日 2007-04-27 公開日 2007-07-17 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.946 Å) 主引用文献 Structural basis for reversible photoswitching in Dronpa Proc.Natl.Acad.Sci.Usa, 104, 2007
8EYU	Structure of Beetroot dimer bound to DFAME 分子名称: POTASSIUM ION, RNA (49-MER), methyl (2E)-3-{(4Z)-4-[(3,5-difluoro-4-hydroxyphenyl)methylidene]-1-methyl-5-oxo-4,5-dihydro-1H-imidazol-2-yl}prop-2-enoate 著者 Passalacqua, L.F.M, Ferre-D'Amare, A.R. 登録日 2022-10-28 公開日 2023-05-31 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Co-crystal structures of the fluorogenic aptamer Beetroot show that close homology may not predict similar RNA architecture. Nat Commun, 14, 2023
5DMY	Beta-galactosidase - construct 33-930 分子名称: 1,2-ETHANEDIOL, Beta-galactosidase, MAGNESIUM ION, ... 著者 Watson, K.A, Lazidou, A. 登録日 2015-09-09 公開日 2016-10-05 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Rational protein engineering toward the development of a beta-galactosidase with improved functional properties To Be Published
8SFX	High Affinity nanobodies against GFP 分子名称: D-MALATE, GLYCEROL, Green fluorescent protein, ... 著者 Ketaren, N.E, Rout, M.P, Bonanno, J.B, Almo, S.C. 登録日 2023-04-11 公開日 2024-05-22 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 High Affinity nanobodies against GFP To Be Published
8HGI	Crystal structure of VNAR aGFP14 in complex with GFP 分子名称: GFP, VNAR aGFP14 著者 Zheng, P, Zhu, C, Jin, T. 登録日 2022-11-14 公開日 2023-09-27 最終更新日 2024-10-02 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Selection, identification and crystal structure of shark-derived single-domain antibodies against a green fluorescent protein. Int.J.Biol.Macromol., 247, 2023
2VMB	The three-dimensional structure of the cytoplasmic domains of EpsF from the Type 2 Secretion System of Vibrio cholerae 分子名称: CALCIUM ION, GENERAL SECRETION PATHWAY PROTEIN F 著者 Abendroth, J, Korotkov, K.V, Mitchell, D.D, Kreger, A, Hol, W.G.J. 登録日 2008-01-25 公開日 2009-02-10 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 The Three-Dimensional Structure of the Cytoplasmic Domains of Epsf from the Type 2 Secretion System of Vibrio Cholerae. J.Struct.Biol., 166, 2009
7O7X	Crystal structure of rsEGFP2 mutant V151A in the non-fluorescent off-state determined by serial femtosecond crystallography at room temperature 分子名称: Green fluorescent protein 著者 Hadjidemetriou, K, Coquelle, N, Barends, T.R.M, Schlichting, I, Colletier, J.-P, Weik, M. 登録日 2021-04-13 公開日 2022-07-27 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Rational Control of Off-State Heterogeneity in a Photoswitchable Fluorescent Protein Provides Switching Contrast Enhancement. Chemphyschem, 23, 2022
4PQI	Crystal structure of glutathione transferase lambda3 from Populus trichocarpa 分子名称: CALCIUM ION, GLUTATHIONE, In2-1 family protein, ... 著者 Lallement, P.A, Meux, E, Gualberto, J.M, Prosper, P, Didierjean, C, Haouz, A, Saul, F, Rouhier, N, Hecker, A. 登録日 2014-03-03 公開日 2014-06-25 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Structural and enzymatic insights into Lambda glutathione transferases from Populus trichocarpa, monomeric enzymes constituting an early divergent class specific to terrestrial plants. Biochem.J., 462, 2014
7A88	rsGreen0.7-K206A-F145M in the green-off state 分子名称: Green fluorescent protein, TRIETHYLENE GLYCOL 著者 De Zitter, E, Dedecker, P, Van Meervelt, L. 登録日 2020-08-30 公開日 2021-02-17 最終更新日 2021-05-05 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Structure-Function Dataset Reveals Environment Effects within a Fluorescent Protein Model System*. Angew.Chem.Int.Ed.Engl., 60, 2021
4DXQ	Crystal Structure of a reconstructed Kaede-type Red Fluorescent Protein, LEA Q38A 分子名称: LEA Q38A GFP-LIKE PROTEINS 著者 Kim, H, Wachter, R.M. 登録日 2012-02-27 公開日 2013-02-27 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Acid-Base Catalysis and Crystal Structures of a Least Evolved Ancestral GFP-like Protein Undergoing Green-to-Red Photoconversion. Biochemistry, 52, 2013
3URN	Crystal Structure of PTE mutant H254G/H257W/L303T/K185R/I274N/A80V/S61T with cyclohexyl methylphosphonate inhibitor 分子名称: COBALT (II) ION, IMIDAZOLE, Parathion hydrolase, ... 著者 Tsai, P, Fox, N.G, Li, Y, Barondeau, D.P, Raushel, F.M. 登録日 2011-11-22 公開日 2012-08-01 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Enzymes for the homeland defense: optimizing phosphotriesterase for the hydrolysis of organophosphate nerve agents. Biochemistry, 51, 2012
6ZSM	Crystal structure of rsGCaMP double mutant Ile80His/Val116Ile in the ON state (non-illuminated) 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, FORMIC ACID, ... 著者 Janowski, R, Fuenzalida-Werner, J.P, Mishra, K, Stiel, A.C, Niessing, D. 登録日 2020-07-16 公開日 2021-10-27 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Genetically encoded photo-switchable molecular sensors for optoacoustic and super-resolution imaging. Nat.Biotechnol., 40, 2022

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