PDB: 42250 件ウェブページステータス検索Chemie searchBIRD

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1OV6	M64V PNP + ALLO 分子名称: 9-(6-DEOXY-BETA-D-ALLOFURANOSYL)-6-METHYLPURINE, PHOSPHATE ION, Purine nucleoside phosphorylase 著者 Ealick, S.E, Bennett, E.M, Anand, R, Secrist, J.A, Parker, P.W, Hassan, A.E, Allan, P.W, McPherson, D.T, Sorscher, E.J. 登録日 2003-03-25 公開日 2004-02-17 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Designer gene therapy using an Escherichia coli purine nucleoside phosphorylase/prodrug system. Chem.Biol., 10, 2003
5B32	The crystal structure of the heterotypic H2AZ/H2A nucleosome with H3.3. 分子名称: CHLORIDE ION, DNA (146-MER), Histone H2A type 1-B/E, ... 著者 Horikoshi, N, Taguchi, H, Arimura, Y, Kurumizaka, H. 登録日 2016-02-08 公開日 2016-08-03 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Crystal structures of heterotypic nucleosomes containing histones H2A.Z and H2A. Open Biology, 6, 2016
5B33	The crystal structure of the H2AZ nucleosome with H3.3. 分子名称: DNA (146-MER), Histone H2A.Z, Histone H2B type 1-J, ... 著者 Horikoshi, N, Taguchi, H, Arimura, Y, Kurumizaka, H. 登録日 2016-02-08 公開日 2016-08-03 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.925 Å) 主引用文献 Crystal structures of heterotypic nucleosomes containing histones H2A.Z and H2A. Open Biology, 6, 2016
6L49	H3-CA-H3 tri-nucleosome with the 22 base-pair linker DNA 分子名称: DNA (485-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Takizawa, Y, Ho, C.-H, Tachiwana, H, Matsunami, H, Ohi, M, Wolf, M, Kurumizaka, H. 登録日 2019-10-16 公開日 2019-12-04 最終更新日 2025-07-02 実験手法 ELECTRON MICROSCOPY (18.9 Å) 主引用文献 Cryo-EM Structures of Centromeric Tri-nucleosomes Containing a Central CENP-A Nucleosome. Structure, 28, 2020
4QFZ	Crystal structure of the tetrameric dGTP/dTTP-bound SAMHD1 (RN206) mutant catalytic core 分子名称: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, MAGNESIUM ION, ... 著者 Koharudin, L.M.I, Wu, Y, DeLucia, M, Mehrens, J, Gronenborn, A.M, Ahn, J. 登録日 2014-05-22 公開日 2014-10-15 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural Basis of Allosteric Activation of Sterile alpha Motif and Histidine-Aspartate Domain-containing Protein 1 (SAMHD1) by Nucleoside Triphosphates. J.Biol.Chem., 289, 2014
4QG0	Crystal structure of the tetrameric dGTP/dUTP-bound SAMHD1 (RN206) mutant catalytic core 分子名称: 1,2-ETHANEDIOL, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DEOXYURIDINE-5'-TRIPHOSPHATE, ... 著者 Koharudin, L.M.I, Wu, Y, DeLucia, M, Mehrens, J, Gronenborn, A.M, Ahn, J. 登録日 2014-05-22 公開日 2014-10-15 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural Basis of Allosteric Activation of Sterile alpha Motif and Histidine-Aspartate Domain-containing Protein 1 (SAMHD1) by Nucleoside Triphosphates. J.Biol.Chem., 289, 2014
4QG4	Crystal structure of the tetrameric GTP/dATP/ATP-bound SAMHD1 (H210A) mutant catalytic core 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, GUANOSINE-5'-TRIPHOSPHATE, ... 著者 Koharudin, L.M.I, Wu, Y, DeLucia, M, Mehrens, J, Gronenborn, A.M, Ahn, J. 登録日 2014-05-22 公開日 2014-10-15 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural Basis of Allosteric Activation of Sterile alpha Motif and Histidine-Aspartate Domain-containing Protein 1 (SAMHD1) by Nucleoside Triphosphates. J.Biol.Chem., 289, 2014
7PET	The 4x177 nucleosome array containing H1 分子名称: DNA (702-MER), Histone H1.4, Histone H2A type 1-B/E, ... 著者 Dombrowski, M, Cramer, P. 登録日 2021-08-11 公開日 2022-08-03 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (9.5 Å) 主引用文献 Histone H1 binding to nucleosome arrays depends on linker DNA length and trajectory. Nat.Struct.Mol.Biol., 29, 2022
4QG1	Crystal structure of the tetrameric GTP/dATP-bound SAMHD1 (RN206) mutant catalytic core 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, GUANOSINE-5'-TRIPHOSPHATE, ... 著者 Koharudin, L.M.I, Wu, Y, DeLucia, M, Mehrens, J, Gronenborn, A.M, Ahn, J. 登録日 2014-05-22 公開日 2014-10-15 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural Basis of Allosteric Activation of Sterile alpha Motif and Histidine-Aspartate Domain-containing Protein 1 (SAMHD1) by Nucleoside Triphosphates. J.Biol.Chem., 289, 2014
4QFX	Crystal structure of the tetrameric dGTP/dATP-bound SAMHD1 (RN206) mutant catalytic core 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, ... 著者 Koharudin, L.M.I, Wu, Y, DeLucia, M, Mehrens, J, Gronenborn, A.M, Ahn, J. 登録日 2014-05-21 公開日 2014-10-15 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural Basis of Allosteric Activation of Sterile alpha Motif and Histidine-Aspartate Domain-containing Protein 1 (SAMHD1) by Nucleoside Triphosphates. J.Biol.Chem., 289, 2014
4QG2	Crystal structure of the tetrameric GTP/dATP/ATP-bound SAMHD1 (RN206) mutant catalytic core 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, GUANOSINE-5'-TRIPHOSPHATE, ... 著者 Koharudin, L.M.I, Wu, Y, DeLucia, M, Mehrens, J, Gronenborn, A.M, Ahn, J. 登録日 2014-05-22 公開日 2014-10-15 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Structural Basis of Allosteric Activation of Sterile alpha Motif and Histidine-Aspartate Domain-containing Protein 1 (SAMHD1) by Nucleoside Triphosphates. J.Biol.Chem., 289, 2014
4QFY	Crystal structure of the tetrameric dGTP/dCTP-bound SAMHD1 (RN206) mutant catalytic core 分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, ... 著者 Koharudin, L.M.I, Wu, Y, DeLucia, M, Mehrens, J, Gronenborn, A.M, Ahn, J. 登録日 2014-05-22 公開日 2014-10-15 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structural Basis of Allosteric Activation of Sterile alpha Motif and Histidine-Aspartate Domain-containing Protein 1 (SAMHD1) by Nucleoside Triphosphates. J.Biol.Chem., 289, 2014
5KB3	1.4 A resolution structure of Helicobacter Pylori MTAN in complexed with p-ClPh-DADMe-ImmA 分子名称: (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-{[(4-chlorophenyl)sulfanyl]methyl}pyrrolidin-3-ol, Aminodeoxyfutalosine nucleosidase, MAGNESIUM ION 著者 Banco, M.T, Ronning, D.R. 登録日 2016-06-02 公開日 2016-11-16 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.399 Å) 主引用文献 Neutron structures of the Helicobacter pylori 5'-methylthioadenosine nucleosidase highlight proton sharing and protonation states. Proc. Natl. Acad. Sci. U.S.A., 113, 2016
6R0C	Human-D02 Nucleosome Core Particle with biotin-streptavidin label 分子名称: DNA (142-MER), Histone H2A type 1, Histone H2B type 1-C/E/F/G/I, ... 著者 Pye, V.E, Wilson, M.D, Cherepanov, P, Costa, A. 登録日 2019-03-12 公開日 2019-09-25 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.2 Å) 主引用文献 Retroviral integration into nucleosomes through DNA looping and sliding along the histone octamer. Nat Commun, 10, 2019
6S01	Structure of LEDGF PWWP domain bound H3K36 methylated nucleosome 分子名称: Histone H2A, Histone H2B 1.1, Histone H3, ... 著者 Wang, H, Farnung, L, Dienemann, C, Cramer, P. 登録日 2019-06-13 公開日 2019-12-18 最終更新日 2024-10-16 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structure of H3K36-methylated nucleosome-PWWP complex reveals multivalent cross-gyre binding. Nat.Struct.Mol.Biol., 27, 2020
6RNY	PFV intasome - nucleosome strand transfer complex 分子名称: DNA (108-MER), DNA (128-MER), DNA (33-MER), ... 著者 Pye, V.E, Renault, L, Maskell, D.P, Cherepanov, P, Costa, A. 登録日 2019-05-09 公開日 2019-09-25 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Retroviral integration into nucleosomes through DNA looping and sliding along the histone octamer. Nat Commun, 10, 2019
5AV6	human nucleosome core particle 分子名称: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Wakamori, M, Fujii, Y, Umehara, T, Yokoyama, S. 登録日 2015-06-12 公開日 2015-12-23 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Intra- and inter-nucleosomal interactions of the histone H4 tail revealed with a human nucleosome core particle with genetically-incorporated H4 tetra-acetylation Sci Rep, 5, 2015
2QPL	Crystal structure of calf spleen purine nucleoside phosphorylase complexed to a novel purine analogue 分子名称: 4-amino-7-methylpyrazolo[1,5-a][1,3,5]triazin-2(1H)-one, MAGNESIUM ION, Purine nucleoside phosphorylase, ... 著者 Pereira, H.M, Berdini, V, Cleasby, A, Garratt, R.C. 登録日 2007-07-24 公開日 2007-12-18 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of calf spleen purine nucleoside phosphorylase complexed to a novel purine analogue. Febs Lett., 581, 2007
5AV9	human nucleosome core particle 分子名称: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Wakamori, M, Fujii, Y, Umehara, T, Yokoyama, S. 登録日 2015-06-12 公開日 2015-12-23 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Intra- and inter-nucleosomal interactions of the histone H4 tail revealed with a human nucleosome core particle with genetically-incorporated H4 tetra-acetylation Sci Rep, 5, 2015
5AV8	human nucleosome core particle 分子名称: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Wakamori, M, Fujii, Y, Umehara, T, Yokoyama, S. 登録日 2015-06-12 公開日 2015-12-23 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Intra- and inter-nucleosomal interactions of the histone H4 tail revealed with a human nucleosome core particle with genetically-incorporated H4 tetra-acetylation Sci Rep, 5, 2015
6HTS	Cryo-EM structure of the human INO80 complex bound to nucleosome 分子名称: ADENOSINE-5'-DIPHOSPHATE, Actin-related protein 5, Chromatin-remodeling ATPase INO80, ... 著者 Ayala, R, Willhoft, O, Aramayo, R.J, Wilkinson, M, McCormack, E.A, Ocloo, L, Wigley, D.B, Zhang, X. 登録日 2018-10-04 公開日 2018-11-07 最終更新日 2025-07-09 実験手法 ELECTRON MICROSCOPY (4.8 Å) 主引用文献 Structure and regulation of the human INO80-nucleosome complex. Nature, 556, 2018
5AV5	human nucleosome core particle 分子名称: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Wakamori, M, Fujii, Y, Umehara, T, Yokoyama, S. 登録日 2015-06-11 公開日 2015-12-23 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Intra- and inter-nucleosomal interactions of the histone H4 tail revealed with a human nucleosome core particle with genetically-incorporated H4 tetra-acetylation Sci Rep, 5, 2015
6J4X	RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-1) of the nucleosome (+1A) 分子名称: DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ... 著者 Ehara, H, Kujirai, T, Fujino, Y, Shirouzu, M, Kurumizaka, H, Sekine, S. 登録日 2019-01-10 公開日 2019-02-20 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 Structural insight into nucleosome transcription by RNA polymerase II with elongation factors. Science, 363, 2019
5AVC	human nucleosome core particle 分子名称: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Wakamori, M, Fujii, Y, Umehara, T, Yokoyama, S. 登録日 2015-06-12 公開日 2015-12-23 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Intra- and inter-nucleosomal interactions of the histone H4 tail revealed with a human nucleosome core particle with genetically-incorporated H4 tetra-acetylation Sci Rep, 5, 2015
5AVB	human nucleosome core particle 分子名称: DNA (147-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Wakamori, M, Fujii, Y, Umehara, T, Yokoyama, S. 登録日 2015-06-12 公開日 2015-12-23 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Intra- and inter-nucleosomal interactions of the histone H4 tail revealed with a human nucleosome core particle with genetically-incorporated H4 tetra-acetylation Sci Rep, 5, 2015

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