PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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3FIS	THE MOLECULAR STRUCTURE OF WILD-TYPE AND A MUTANT FIS PROTEIN: RELATIONSHIP BETWEEN MUTATIONAL CHANGES AND RECOMBINATIONAL ENHANCER FUNCTION OR DNA BINDING 分子名称: FACTOR FOR INVERSION STIMULATION (FIS) 著者 Yuan, H.S, Finkel, S.E, Feng, J-A, Johnson, R.C, Dickerson, R.E. 登録日 1991-08-12 公開日 1993-10-31 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 The molecular structure of wild-type and a mutant Fis protein: relationship between mutational changes and recombinational enhancer function or DNA binding. Proc.Natl.Acad.Sci.USA, 88, 1991
7A8P	Structure of human mitochondrial RNA polymerase in complex with IMT inhibitor. 分子名称: (3~{R})-1-[(2~{R})-2-[4-(2-chloranyl-4-fluoranyl-phenyl)-2-oxidanylidene-chromen-7-yl]oxypropanoyl]piperidine-3-carboxylic acid, DNA-directed RNA polymerase, mitochondrial 著者 Hillen, H.S, Bonekamp, N, Peter, B, Felser, A, Bergbrede, T, Choidas, A, Horn, M, Unger, A, di Lucrezia, R, Atanassov, I, Li, X, Koch, U, Menninger, S, Boros, J, Habenberger, P, Giavalisco, P, Cramer, P, Denzel, M, Nussbaumer, P, Klebl, B, Falkenberg, M, Gustafsson, C.M, Larsson, N.G. 登録日 2020-08-30 公開日 2020-12-30 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Small-molecule inhibitors of human mitochondrial DNA transcription. Nature, 588, 2020
6BM4	Pol II elongation complex with an abasic lesion at i-1 position,soaking UMPNPP 分子名称: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine, DNA (5'-D(P*CP*AP*(3DR)P*CP*TP*CP*TP*TP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, ... 著者 Wang, W, Wang, D. 登録日 2017-11-13 公開日 2018-02-28 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.951 Å) 主引用文献 Structural basis of transcriptional stalling and bypass of abasic DNA lesion by RNA polymerase II. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6BLP	Pol II elongation complex with an abasic lesion at i+1 position, soaking AMPCPP 分子名称: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, DNA (5'-D(P*AP*(3DR)P*CP*TP*CP*TP*CP*GP*AP*TP*G)-3'), DNA-directed RNA polymerase II subunit RPB1, ... 著者 Wang, W, Wang, D. 登録日 2017-11-11 公開日 2018-02-28 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (3.203 Å) 主引用文献 Structural basis of transcriptional stalling and bypass of abasic DNA lesion by RNA polymerase II. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
8VAT	Structure of the E. coli clamp loader bound to the beta clamp in a Open-RNAp/t conformation 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... 著者 Landeck, J.T, Kelch, B.A. 登録日 2023-12-11 公開日 2024-03-27 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
8VAS	Structure of the E. coli clamp loader bound to the beta clamp in an Altered-Collar conformation 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... 著者 Landeck, J.T, Kelch, B.A. 登録日 2023-12-11 公開日 2024-03-27 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
7KC0	Structure of the Saccharomyces cerevisiae replicative polymerase delta in complex with a primer/template and the PCNA clamp 分子名称: 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE, DNA (25-MER), DNA (5'-D(P*AP*TP*GP*AP*CP*CP*AP*TP*GP*AP*TP*TP*AP*CP*GP*AP*AP*TP*TP*GP*C)-3'), ... 著者 Zheng, F, Georgescu, R, Li, H, O'Donnell, M.E. 登録日 2020-10-04 公開日 2020-12-02 最終更新日 2020-12-16 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structure of eukaryotic DNA polymerase delta bound to the PCNA clamp while encircling DNA. Proc.Natl.Acad.Sci.USA, 117, 2020
8VAN	Structure of the E. coli clamp loader bound to the beta clamp in an Initial-Binding conformation 分子名称: Beta sliding clamp, DNA polymerase III subunit delta, DNA polymerase III subunit delta', ... 著者 Landeck, J.T, Pajak, J, Kelch, B.A. 登録日 2023-12-11 公開日 2024-03-27 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (7.7 Å) 主引用文献 Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
8VAP	Structure of the E. coli clamp loader bound to the beta clamp in a Fully-Open conformation 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... 著者 Landeck, J.T, Kelch, B.A. 登録日 2023-12-11 公開日 2024-03-27 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
8VAM	Structure of the E. coli clamp loader bound to the beta clamp in a Semi-Open conformation 分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Beta sliding clamp, ... 著者 Landeck, J.T, Kelch, B.A. 登録日 2023-12-11 公開日 2024-03-27 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem., 300, 2024
6UPY	RNA polymerase II elongation complex with 5-guanidinohydantoin lesion in state 2E 分子名称: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... 著者 Oh, J, Wang, D. 登録日 2019-10-18 公開日 2020-06-10 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 RNA polymerase II stalls on oxidative DNA damage via a torsion-latch mechanism involving lone pair-pi and CH-pi interactions. Proc.Natl.Acad.Sci.USA, 117, 2020
5YHU	Crystal structure of the DNA-binding domain of human myelin-gene regulatory factor 分子名称: Myelin regulatory factor 著者 Chen, B, Zhu, Y, Ye, S, Zhang, R. 登録日 2017-09-30 公開日 2018-05-23 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Structure of the DNA-binding domain of human myelin-gene regulatory factor reveals its potential protein-DNA recognition mode. J. Struct. Biol., 203, 2018
1FYM	SERENDIPITOUS CRYSTAL STRUCTURE CONTAINING THE HEAT SHOCK TRANSCRIPTION FACTOR'S DNA BINDING DOMAIN AND COGNATE DNA IN A TAIL-TO-TAIL ORIENTATION 分子名称: HEAT SHOCK TRANSCRIPTION PROTEIN, TAIL-TO-TAIL HSE 著者 Littlefield, O, Nelson, H.C.M. 登録日 2000-10-02 公開日 2001-09-28 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal packing interaction that blocks crystallization of a site-specific DNA binding protein-DNA complex. Proteins, 45, 2001
1FYL	SERENDIPITOUS CRYSTAL STRUCTURE CONTAINING THE HEAT SHOCK TRANSCRIPTION FACTOR'S DNA BINDING DOMAIN AND COGNATE DNA IN A HEAD-TO-HEAD ORIENTATION 分子名称: HEAD-TO-HEAD HSE, HEAT SHOCK FACTOR PROTEIN 著者 Littlefield, O, Nelson, H.C.M. 登録日 2000-10-02 公開日 2001-09-28 最終更新日 2021-11-03 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal packing interaction that blocks crystallization of a site-specific DNA binding protein-DNA complex. Proteins, 45, 2001
5ZHU	Crystal structure of the DNA-binding domain of human myelin-gene regulatory factor 分子名称: Myelin regulatory factor 著者 Chen, B, Zhu, Y, Ye, S, Zhang, R. 登録日 2018-03-13 公開日 2018-05-23 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.202 Å) 主引用文献 Structure of the DNA-binding domain of human myelin-gene regulatory factor reveals its potential protein-DNA recognition mode. J. Struct. Biol., 203, 2018
8G2N	Crystal structure of Tetrahymena thermophila G-rich DNA with novel ligand PyDH2 分子名称: 4,4'-{pyridine-2,6-diylbis[carbonyl-(1E)-hydrazin-2-yl-1-ylidene-(E)-methanylylidene]}bis(1-methylquinolin-1-ium), G-rich DNA, MAGNESIUM ION, ... 著者 Martin, K.N, Yatsunyk, L.A. 登録日 2023-02-06 公開日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.33 Å) 主引用文献 Crystal structure of Tetrahymena thermophila G-rich DNA with novel ligand PyDH2 To be published
7RTE	X-ray structure of wild type RBPJ-L3MBTL3-DNA complex 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*GP*GP*T)-3'), DNA (5'-D(*TP*TP*AP*CP*CP*GP*TP*GP*GP*GP*AP*AP*AP*GP*A)-3'), ... 著者 Hall, D.P, Kovall, R.A, Yuan, Z. 登録日 2021-08-13 公開日 2022-08-24 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.06 Å) 主引用文献 The structure, binding and function of a Notch transcription complex involving RBPJ and the epigenetic reader protein L3MBTL3. Nucleic Acids Res., 50, 2022
7RTI	X-ray structure of RBPJ-L3MBTL3(dT62)-DNA complex 分子名称: 1,2-ETHANEDIOL, DNA (5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*GP*GP*T)-3'), DNA (5'-D(*TP*TP*AP*CP*CP*GP*TP*GP*GP*GP*AP*AP*AP*GP*A)-3'), ... 著者 Hall, D.P, Kovall, R.A, Yuan, Z. 登録日 2021-08-13 公開日 2022-08-24 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 The structure, binding and function of a Notch transcription complex involving RBPJ and the epigenetic reader protein L3MBTL3. Nucleic Acids Res., 50, 2022
5CIZ	E. coli RNA polymerase alpha subunit CTD in complex with CAP and DNA: A(5)-tract binding site for alpha CTD 分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, DNA (5'-D(*CP*TP*AP*GP*AP*TP*CP*AP*CP*AP*TP*TP*TP*TP*AP*GP*GP*CP*AP*AP*AP*AP*AP*G)-3'), DNA (5'-D(*CP*TP*TP*TP*TP*TP*GP*CP*CP*TP*AP*AP*AP*AP*TP*GP*TP*GP*AP*T)-3'), ... 著者 Napoli, A.A, Lawson, C.L. 登録日 2015-07-13 公開日 2016-06-29 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (5.0098 Å) 主引用文献 The RNA Polymerase alpha Subunit Recognizes the DNA Shape of the Upstream Promoter Element Biochemistry, 2020
2HT0	IHF bound to doubly nicked DNA 分子名称: 5'-D(*CP*GP*GP*TP*GP*CP*AP*AP*CP*AP*AP*AP*T)-3', 5'-D(*GP*CP*TP*TP*AP*TP*CP*AP*AP*TP*TP*TP*GP*TP*TP*GP*CP*AP*CP*C)-3', 5'-D(*GP*GP*CP*CP*AP*AP*AP*AP*AP*AP*GP*CP*AP*TP*T)-3', ... 著者 Swinger, K.K, Rice, P.A. 登録日 2006-07-24 公開日 2006-11-28 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure-based Analysis of HU-DNA Binding. J.Mol.Biol., 365, 2007
1L3L	Crystal structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA 分子名称: 3-OXO-OCTANOIC ACID (2-OXO-TETRAHYDRO-FURAN-3-YL)-AMIDE, 5'-D(*GP*AP*TP*GP*TP*GP*CP*AP*GP*AP*TP*CP*TP*GP*CP*AP*CP*AP*TP*C)-3', Transcriptional activator protein traR 著者 Zhang, R, Pappas, T, Brace, J.L, Miller, P.C, Oulmassov, T, Molyneaux, J.M, Anderson, J.C, Bashkin, J.K, Winans, S.C, Joachimiak, A. 登録日 2002-02-27 公開日 2002-07-03 最終更新日 2017-10-11 実験手法 X-RAY DIFFRACTION (1.66 Å) 主引用文献 Structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA. Nature, 417, 2002
8KG8	Yeast replisome in state II 分子名称: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 45, DNA (61-mer), ... 著者 Dang, S, Zhai, Y, Feng, J, Yu, D, Xu, Z. 登録日 2023-08-17 公開日 2023-12-06 実験手法 ELECTRON MICROSCOPY (4.23 Å) 主引用文献 Synergism between CMG helicase and leading strand DNA polymerase at replication fork. Nat Commun, 14, 2023
8KG9	Yeast replisome in state III 分子名称: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 45, DNA (61-mer), ... 著者 Dang, S, Zhai, Y, Feng, J, Yu, D, Xu, Z. 登録日 2023-08-17 公開日 2023-12-06 実験手法 ELECTRON MICROSCOPY (4.52 Å) 主引用文献 Synergism between CMG helicase and leading strand DNA polymerase at replication fork. Nat Commun, 14, 2023
8KG6	Yeast replisome in state I 分子名称: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 45, Chromosome segregation in meiosis protein 3, ... 著者 Dang, S, Zhai, Y, Feng, J, Yu, D, Xu, Z. 登録日 2023-08-17 公開日 2023-12-06 実験手法 ELECTRON MICROSCOPY (3.07 Å) 主引用文献 Synergism between CMG helicase and leading strand DNA polymerase at replication fork. Nat Commun, 14, 2023
1HU8	CRYSTAL STRUCTURE OF THE MOUSE P53 CORE DNA-BINDING DOMAIN AT 2.7A RESOLUTION 分子名称: CELLULAR TUMOR ANTIGEN P53, ZINC ION 著者 Zhao, K, Chai, X, Johnston, K, Clements, A, Marmorstein, R. 登録日 2001-01-04 公開日 2001-07-04 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal structure of the mouse p53 core DNA-binding domain at 2.7 A resolution. J.Biol.Chem., 276, 2001

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