Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6BGY
DownloadVisualize
BU of 6bgy by Molmil
LINKED KDM5A JMJ DOMAIN BOUND TO THE INHIBITOR 2-((2-chlorophenyl)(2-(1-methylpyrrolidin-2-yl)ethoxy)methyl)-1H-pyrrolo[3,2-b]pyridine-7-carboxylic acid(Compound 46)
分子名称: 1,2-ETHANEDIOL, 2-[(S)-(2-chlorophenyl){2-[(2R)-1-methylpyrrolidin-2-yl]ethoxy}methyl]-1H-pyrrolo[3,2-b]pyridine-7-carboxylic acid, DIMETHYL SULFOXIDE, ...
著者Horton, J.R, Cheng, X.
登録日2017-10-29
公開日2018-03-28
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.22 Å)
主引用文献Insights into the Action of Inhibitor Enantiomers against Histone Lysine Demethylase 5A.
J. Med. Chem., 61, 2018
8W5L
DownloadVisualize
BU of 8w5l by Molmil
Cryo-EM structure of Qb-Ab16
分子名称: Heavy chain of Ab16, Light chain of Ab16, Minor capsid protein A1
著者Bao, K.Y, Li, R.H, Hua, Z.L, Hou, B.D, Zhu, P.
登録日2023-08-27
公開日2025-02-26
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Competition propels, rather than limits, the success of low-affinity B cells in the germinal center response.
Cell Rep, 44, 2025
8W5R
DownloadVisualize
BU of 8w5r by Molmil
Cryo-EM structure of Qb-Ab53
分子名称: Heavy chain of Ab53, Light chain of Ab53, Minor capsid protein A1
著者Bao, K.Y, Li, R.H, Hua, Z.L, Hou, B.D, Zhu, P.
登録日2023-08-27
公開日2025-02-26
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Competition propels, rather than limits, the success of low-affinity B cells in the germinal center response.
Cell Rep, 44, 2025
8W5G
DownloadVisualize
BU of 8w5g by Molmil
Cryo-EM structure of Qb-Ab7
分子名称: Heavy chain of Ab7, Light chain of Ab7, Minor capsid protein A1
著者Bao, K.Y, Li, R.H, Hua, Z.L, Hou, B.D, Zhu, P.
登録日2023-08-26
公開日2025-02-26
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Competition propels, rather than limits, the success of low-affinity B cells in the germinal center response.
Cell Rep, 44, 2025
8W5H
DownloadVisualize
BU of 8w5h by Molmil
Cryo-EM structure of Qb-Ab10
分子名称: Heavy chain of Ab10, Light chain of Ab10, Minor capsid protein A1
著者Bao, K.Y, Li, R.H, Hua, Z.L, Hou, B.D, Zhu, P.
登録日2023-08-26
公開日2025-02-26
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Competition propels, rather than limits, the success of low-affinity B cells in the germinal center response.
Cell Rep, 44, 2025
8W5W
DownloadVisualize
BU of 8w5w by Molmil
Cryo-EM structure of Qb-Ab8
分子名称: Heavy chain of Ab8, Light chain of Ab8, Minor capsid protein A1
著者Bao, K.Y, Li, R.H, Hua, Z.L, Hou, B.D, Zhu, P.
登録日2023-08-27
公開日2025-02-26
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Competition propels, rather than limits, the success of low-affinity B cells in the germinal center response.
Cell Rep, 44, 2025
8W5M
DownloadVisualize
BU of 8w5m by Molmil
Cryo-EM structure of Qb-Ab17
分子名称: Heavy chain of Ab17, Light chain of Ab17, Minor capsid protein A1
著者Bao, K.Y, Li, R.H, Hua, Z.L, Hou, B.D, Zhu, P.
登録日2023-08-27
公開日2025-02-26
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Competition propels, rather than limits, the success of low-affinity B cells in the germinal center response.
Cell Rep, 44, 2025
5LHI
DownloadVisualize
BU of 5lhi by Molmil
Structure of the KDM1A/CoREST complex with the inhibitor N-[3-(ethoxymethyl)-2-[[4-[[(3R)-pyrrolidin-3-yl]methoxy]phenoxy]methyl]phenyl]-4-methylthieno[3,2-b]pyrrole-5-carboxamide
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, LYSINE-SPECIFIC HISTONE DEMETHYLASE 1, ...
著者Cecatiello, V, Pasqualato, S.
登録日2016-07-12
公開日2017-02-22
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Thieno[3,2-b]pyrrole-5-carboxamides as New Reversible Inhibitors of Histone Lysine Demethylase KDM1A/LSD1. Part 2: Structure-Based Drug Design and Structure-Activity Relationship.
J. Med. Chem., 60, 2017
8W5O
DownloadVisualize
BU of 8w5o by Molmil
Cryo-EM structure of Qb-Ab31
分子名称: Heavy chain of Ab31, Light chain of Ab31, Minor capsid protein A1
著者Bao, K.Y, Li, R.H, Hua, Z.L, Hou, B.D, Zhu, P.
登録日2023-08-27
公開日2025-02-26
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Competition propels, rather than limits, the success of low-affinity B cells in the germinal center response.
Cell Rep, 44, 2025
8W5N
DownloadVisualize
BU of 8w5n by Molmil
Cryo-EM structure of Qb-Ab21
分子名称: Heavy chain of Ab21, Light chain of Ab21, Minor capsid protein A1
著者Bao, K.Y, Li, R.H, Hua, Z.L, Hou, B.D, Zhu, P.
登録日2023-08-27
公開日2025-02-26
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Competition propels, rather than limits, the success of low-affinity B cells in the germinal center response.
Cell Rep, 44, 2025
8W5I
DownloadVisualize
BU of 8w5i by Molmil
Cryo-EM structure of Qb-Ab14
分子名称: Heavy chain of Ab14, Light chain of Ab14, Minor capsid protein A1
著者Bao, K.Y, Li, R.H, Hua, Z.L, Hou, B.D, Zhu, P.
登録日2023-08-26
公開日2025-02-26
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Competition propels, rather than limits, the success of low-affinity B cells in the germinal center response.
Cell Rep, 44, 2025
6E0R
DownloadVisualize
BU of 6e0r by Molmil
hALK in complex with compound 7 N-((1S)-1-(5-fluoropyridin-2-yl)ethyl)-1-(5-methyl-1H-pyrazol-3-yl)-3-(oxetan-3-ylsulfonyl)-1H-pyrrolo[2,3-b]pyridin-6-amine
分子名称: ALK tyrosine kinase receptor, N-[(1S)-1-(5-fluoropyridin-2-yl)ethyl]-1-(5-methyl-1H-pyrazol-3-yl)-3-[(oxetan-3-yl)sulfonyl]-1H-pyrrolo[2,3-b]pyridin-6-amine
著者Lane, W, Saikatendu, K.
登録日2018-07-06
公開日2019-05-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.303 Å)
主引用文献Discovery of Potent, Selective, and Brain-Penetrant 1 H-Pyrazol-5-yl-1 H-pyrrolo[2,3- b]pyridines as Anaplastic Lymphoma Kinase (ALK) Inhibitors.
J.Med.Chem., 62, 2019
6EDL
DownloadVisualize
BU of 6edl by Molmil
hALK in complex with compound 1 (S)-N-(1-(2,4-difluorophenyl)ethyl)-3-(3-methyl-1H-pyrazol-5-yl)imidazo[1,2-b]pyridazin-6-amine
分子名称: ALK tyrosine kinase receptor, N-[(1S)-1-(2,4-difluorophenyl)ethyl]-3-(5-methyl-1H-pyrazol-3-yl)imidazo[1,2-b]pyridazin-6-amine
著者Lane, W, Saikatendu, K.
登録日2018-08-09
公開日2019-05-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.799 Å)
主引用文献Discovery of Potent, Selective, and Brain-Penetrant 1 H-Pyrazol-5-yl-1 H-pyrrolo[2,3- b]pyridines as Anaplastic Lymphoma Kinase (ALK) Inhibitors.
J.Med.Chem., 62, 2019
9DFD
DownloadVisualize
BU of 9dfd by Molmil
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin B, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.60A resolution
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Aleksandrova, E.V, Travin, D.Y, Jangra, M, Kaur, M, Darwish, L, Koteva, K, Klepacki, D, Wang, W, Tiffany, M, Sokaribo, A, Coombes, B.K, Vazquez-Laslop, N, Wright, G.D, Mankin, A.S, Polikanov, Y.S.
登録日2024-08-29
公開日2024-11-20
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献A Broad Spectrum Lasso Peptide Antibiotic Targeting the Bacterial Ribosome.
Res Sq, 2024
6OQ5
DownloadVisualize
BU of 6oq5 by Molmil
Structure of the full-length Clostridium difficile toxin B in complex with 3 VHHs
分子名称: 5D, 7F, E3, ...
著者Chen, P, Lam, K, Jin, R.
登録日2019-04-25
公開日2019-07-10
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (3.87 Å)
主引用文献Structure of the full-length Clostridium difficile toxin B.
Nat.Struct.Mol.Biol., 26, 2019
6EBW
DownloadVisualize
BU of 6ebw by Molmil
hALK in complex with compound 9 (6-(((1S)-1-(5-Fluoropyridin-2-yl)ethyl)amino)-1-(3-methyl-1H-pyrazol-5-yl)-1H-pyrrolo[2,3-b]pyridin-3-yl)(morpholin-4-yl)methanone
分子名称: ALK tyrosine kinase receptor, [6-{[(1S)-1-(5-fluoropyridin-2-yl)ethyl]amino}-1-(5-methyl-1H-pyrazol-3-yl)-1H-pyrrolo[2,3-b]pyridin-3-yl](morpholin-4-yl)methanone
著者Lane, W, Saikatendu, K.
登録日2018-08-07
公開日2019-05-01
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.455 Å)
主引用文献Discovery of Potent, Selective, and Brain-Penetrant 1 H-Pyrazol-5-yl-1 H-pyrrolo[2,3- b]pyridines as Anaplastic Lymphoma Kinase (ALK) Inhibitors.
J.Med.Chem., 62, 2019
5MNS
DownloadVisualize
BU of 5mns by Molmil
Structural and functional characterization of OleP in complex with 6DEB in sodium formate
分子名称: 6-DEOXYERYTHRONOLIDE B, Cytochrome P-450, PROTOPORPHYRIN IX CONTAINING FE
著者Parisi, G, Savino, C, Montemiglio, L.C, Vallone, B.
登録日2016-12-13
公開日2018-02-28
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.62 Å)
主引用文献Substrate-induced conformational change in cytochrome P450 OleP.
FASEB J., 33, 2019
2N96
DownloadVisualize
BU of 2n96 by Molmil
An unexpected mode of small molecule DNA binding provides the structural basis for DNA cleavage by the potent antiproliferative agent (-)-lomaiviticin A
分子名称: (1R,1'R,2S,2'S,3R,3'R,5aR,10aR,11a'S)-2'-[(2,6-dideoxy-3-O-methyl-alpha-L-arabino-hexopyranosyl)oxy]-2,2'-diethyl-11,11 '-dihydrazinyl-6,6',9,9'-tetrahydroxy-4,4',5,5',10,10'-hexaoxo-1,1'-bis{[2,4,6-trideoxy-4-(dimethylamino)-beta-L-arabino -hexopyranosyl]oxy}[2,2',3,3',4,4',5,5',5a,8,10,10',10a,11a'-tetradecahydro-1H,1'H-[3,3'-bibenzo[b]fluorene]]-2-yl 2,6-dideoxy-3-O-methyl-alpha-L-arabino-hexopyranoside, DNA (5'-D(*GP*CP*TP*AP*TP*AP*GP*C)-3')
著者Woo, C.M, Li, Z, Paulson, E, Herzon, S.B.
登録日2015-11-07
公開日2016-06-01
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural basis for DNA cleavage by the potent antiproliferative agent (-)-lomaiviticin A.
Proc.Natl.Acad.Sci.USA, 113, 2016
5DLX
DownloadVisualize
BU of 5dlx by Molmil
FIRST DOMAIN OF HUMAN BROMODOMAIN BRD4 IN COMPLEX WITH INHIBITOR N-{3-[4-(3-chlorophenyl)piperazin-1-yl]propyl}-1-{3-methyl-[1,2,4]triazolo[4,3-b]pyridazin-6-yl}piperidine-4-carboxamide
分子名称: Bromodomain-containing protein 4, N-{3-[4-(3-chlorophenyl)piperazin-1-yl]propyl}-1-(3-methyl[1,2,4]triazolo[4,3-b]pyridazin-6-yl)piperidine-4-carboxamide
著者Raux, B, Rebuffet, E, Betzi, S, Morelli, X.
登録日2015-09-07
公開日2016-06-01
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Protein-Protein Interaction Inhibition (2P2I)-Oriented Chemical Library Accelerates Hit Discovery.
Acs Chem.Biol., 11, 2016
3I0C
DownloadVisualize
BU of 3i0c by Molmil
Crystal structure of GTB C80S/C196S unliganded
分子名称: ABO glycosyltransferase
著者Schuman, B, Persson, M, Landry, R.C, Polakowski, R, Weadge, J.T, Seto, N.O.L, Borisova, S, Palcic, M.M, Evans, S.V.
登録日2009-06-25
公開日2010-08-11
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Cysteine-to-serine mutants dramatically reorder the active site of human ABO(H) blood group B glycosyltransferase without affecting activity: structural insights into cooperative substrate binding
J.Mol.Biol., 402, 2010
3I0H
DownloadVisualize
BU of 3i0h by Molmil
Crystal structure of GTB C80S/C196S/C209S unliganded
分子名称: ABO glycosyltransferase
著者Schuman, B, Persson, M, Landry, R.C, Polakowski, R, Weadge, J.T, Seto, N.O.L, Borisova, S, Palcic, M.M, Evans, S.V.
登録日2009-06-25
公開日2010-08-11
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Cysteine-to-serine mutants dramatically reorder the active site of human ABO(H) blood group B glycosyltransferase without affecting activity: structural insights into cooperative substrate binding
J.Mol.Biol., 402, 2010
3I0K
DownloadVisualize
BU of 3i0k by Molmil
Crystal structure of GTB C80S/C196S/C209S + UDP + H antigen
分子名称: ABO glycosyltransferase, URIDINE-5'-DIPHOSPHATE, alpha-L-fucopyranose-(1-2)-hexyl beta-D-galactopyranoside
著者Schuman, B, Persson, M, Landry, R.C, Polakowski, R, Weadge, J.T, Seto, N.O.L, Borisova, S, Palcic, M.M, Evans, S.V.
登録日2009-06-25
公開日2010-08-11
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Cysteine-to-serine mutants dramatically reorder the active site of human ABO(H) blood group B glycosyltransferase without affecting activity: structural insights into cooperative substrate binding
J.Mol.Biol., 402, 2010
5KQY
DownloadVisualize
BU of 5kqy by Molmil
Protease E35D-DRV
分子名称: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE, Protease E35D-DRV
著者Liu, Z, Poole, K.M, Mahon, B.P, McKenna, R, Fanucci, G.E.
登録日2016-07-06
公開日2016-09-21
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Effects of Hinge-region Natural Polymorphisms on Human Immunodeficiency Virus-Type 1 Protease Structure, Dynamics, and Drug Pressure Evolution.
J.Biol.Chem., 291, 2016
3I0F
DownloadVisualize
BU of 3i0f by Molmil
Crystal structure of GTB C80S/C196S + UDP + H antigen
分子名称: ABO glycosyltransferase, MANGANESE (II) ION, URIDINE-5'-DIPHOSPHATE, ...
著者Schuman, B, Persson, M, Landry, R.C, Polakowski, R, Weadge, J.T, Seto, N.O.L, Borisova, S, Palcic, M.M, Evans, S.V.
登録日2009-06-25
公開日2010-08-11
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Cysteine-to-serine mutants dramatically reorder the active site of human ABO(H) blood group B glycosyltransferase without affecting activity: structural insights into cooperative substrate binding
J.Mol.Biol., 402, 2010
3I0J
DownloadVisualize
BU of 3i0j by Molmil
Crystal structure of GTB C80S/C196S/C209S + H antigen
分子名称: ABO glycosyltransferase, alpha-L-fucopyranose-(1-2)-hexyl beta-D-galactopyranoside
著者Schuman, B, Persson, M, Landry, R.C, Polakowski, R, Weadge, J.T, Seto, N.O.L, Borisova, S, Palcic, M.M, Evans, S.V.
登録日2009-06-25
公開日2010-08-11
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Cysteine-to-serine mutants dramatically reorder the active site of human ABO(H) blood group B glycosyltransferase without affecting activity: structural insights into cooperative substrate binding.
J.Mol.Biol., 402, 2010

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon