PDB: 2561 件ウェブページステータス検索Chemie searchBIRD

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3VR3	Crystal structure of AMP-PNP bound A3B3 complex from Enterococcus hirae V-ATPase [bA3B3] 分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, V-type sodium ATPase catalytic subunit A, ... 著者 Arai, S, Saijo, S, Suzuki, K, Mizutani, K, Kakinuma, Y, Ishizuka-Katsura, Y, Ohsawa, N, Terada, T, Shirouzu, M, Yokoyama, S, Iwata, S, Yamato, I, Murata, T. 登録日 2012-04-03 公開日 2013-01-16 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures Nature, 493, 2013
3VR5	Crystal structure of nucleotide-free Enterococcus hirae V1-ATPase [eV1(L)] 分子名称: V-type sodium ATPase catalytic subunit A, V-type sodium ATPase subunit B, V-type sodium ATPase subunit D, ... 著者 Saijo, S, Arai, S, Suzuki, K, Mizutani, K, Kakinuma, Y, Ishizuka-Katsura, Y, Ohsawa, N, Terada, T, Shirouzu, M, Yokoyama, S, Iwata, S, Yamato, I, Murata, T. 登録日 2012-04-03 公開日 2013-01-16 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (3.9 Å) 主引用文献 Rotation mechanism of Enterococcus hirae V(1)-ATPase based on asymmetric crystal structures Nature, 493, 2013
5VOX	Yeast V-ATPase in complex with Legionella pneumophila effector SidK (rotational state 1) 分子名称: V-type proton ATPase catalytic subunit A,V-type proton ATPase catalytic subunit A, V-type proton ATPase subunit B, V-type proton ATPase subunit C, ... 著者 Zhao, J. 登録日 2017-05-03 公開日 2017-06-21 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (6.8 Å) 主引用文献 Molecular basis for the binding and modulation of V-ATPase by a bacterial effector protein. PLoS Pathog., 13, 2017
5VOY	Yeast V-ATPase in complex with Legionella pneumophila effector SidK (rotational state 2) 分子名称: V-type proton ATPase catalytic subunit A,V-type proton ATPase catalytic subunit A, V-type proton ATPase subunit B, V-type proton ATPase subunit C, ... 著者 Zhao, J. 登録日 2017-05-03 公開日 2017-06-21 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (7.9 Å) 主引用文献 Molecular basis for the binding and modulation of V-ATPase by a bacterial effector protein. PLoS Pathog., 13, 2017
5VOZ	Yeast V-ATPase in complex with Legionella pneumophila effector SidK (rotational state 3) 分子名称: Uncharacterized protein, V-type proton ATPase catalytic subunit A,V-type proton ATPase catalytic subunit A, V-type proton ATPase subunit B, ... 著者 Zhao, J. 登録日 2017-05-03 公開日 2017-06-28 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (7.6 Å) 主引用文献 Molecular basis for the binding and modulation of V-ATPase by a bacterial effector protein. PLoS Pathog., 13, 2017
4RND	Crystal Structure of the subunit DF-assembly of the eukaryotic V-ATPase. 分子名称: GLYCEROL, V-type proton ATPase subunit D, V-type proton ATPase subunit F 著者 Balakrishna, A.M, Basak, S, Gruber, G. 登録日 2014-10-24 公開日 2014-12-10 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.18 Å) 主引用文献 Crystal Structure of Subunits D and F in Complex Gives Insight into Energy Transmission of the Eukaryotic V-ATPase from Saccharomyces cerevisiae. J.Biol.Chem., 290, 2015
1YCE	Structure of the rotor ring of F-type Na+-ATPase from Ilyobacter tartaricus 分子名称: NONAN-1-OL, SODIUM ION, subunit c 著者 Meier, T, Polzer, P, Diederichs, K, Welte, W, Dimroth, P. 登録日 2004-12-22 公開日 2005-04-12 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structure of the rotor ring of F-Type Na+-ATPase from Ilyobacter tartaricus. Science, 308, 2005
3V4S	Crystal Structure of ADP-ATP complex of purK: N5-carboxyaminoimidazole ribonucleotide synthetase 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, CARBONATE ION, ... 著者 Fung, L.W, Tuntland, M.L, Santarsiero, B.D, Johnson, M.E. 登録日 2011-12-15 公開日 2013-02-13 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.02 Å) 主引用文献 Elucidation of the bicarbonate binding site and insights into the carboxylation mechanism of (N(5))-carboxyaminoimidazole ribonucleotide synthase (PurK) from Bacillus anthracis. Acta Crystallogr.,Sect.D, 70, 2014
3MWD	Truncated Human ATP-Citrate Lyase with Citrate Bound 分子名称: ATP-citrate synthase, CITRIC ACID 著者 Fraser, M.E, Sun, T. 登録日 2010-05-05 公開日 2010-06-16 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Identification of the citrate-binding site of human ATP-citrate lyase using X-ray crystallography. J.Biol.Chem., 285, 2010
3MWE	Truncated Human ATP-Citrate Lyase with Tartrate Bound 分子名称: ATP-citrate synthase, L(+)-TARTARIC ACID, MAGNESIUM ION 著者 Fraser, M.E, Sun, T. 登録日 2010-05-05 公開日 2010-06-16 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Identification of the citrate-binding site of human ATP-citrate lyase using X-ray crystallography. J.Biol.Chem., 285, 2010
1D8S	ESCHERICHIA COLI F1 ATPASE 分子名称: F1 ATPASE (ALPHA SUBUNIT), F1 ATPASE (BETA SUBUNIT), F1 ATPASE (GAMMA SUBUNIT) 著者 Hausrath, A.C, Gruber, G, Matthews, B.W, Capaldi, R.A. 登録日 1999-10-25 公開日 1999-12-03 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (4.4 Å) 主引用文献 Structural features of the gamma subunit of the Escherichia coli F(1) ATPase revealed by a 4.4-A resolution map obtained by x-ray crystallography. Proc.Natl.Acad.Sci.USA, 96, 1999
7WJ4	Structural basis for ligand binding modes of CTP synthase 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CTP synthase, GAMMA-L-GLUTAMIC ACID, ... 著者 Liu, J.L, Guo, C.J. 登録日 2022-01-05 公開日 2023-01-11 実験手法 ELECTRON MICROSCOPY (3.15 Å) 主引用文献 Structural basis for ligand binding modes of CTP synthase. Proc.Natl.Acad.Sci.USA, 118, 2021
9BRU	Intact V-ATPase State 1 in synaptophysin knock-out isolated synaptic vesicles 分子名称: Renin receptor cytoplasmic fragment, Ribonuclease kappa, V-type proton ATPase 116 kDa subunit a 1, ... 著者 Wang, C, Jiang, W, Yang, K, Wang, X, Guo, Q, Brunger, A.T. 登録日 2024-05-11 公開日 2024-06-19 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 Structure and topography of the synaptic V-ATPase-synaptophysin complex. Nature, 2024
9BRT	Intact V-ATPase State 1 and synaptophysin complex in mouse brain isolated synaptic vesicles 分子名称: Renin receptor cytoplasmic fragment, Ribonuclease kappa, Synaptophysin, ... 著者 Wang, C, Jiang, W, Yang, K, Wang, X, Guo, Q, Brunger, A.T. 登録日 2024-05-11 公開日 2024-06-19 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 Structure and topography of the synaptic V-ATPase-synaptophysin complex. Nature, 2024
9BRS	Intact V-ATPase State 2 in synaptophysin knock-out isolated synaptic vesicles 分子名称: Renin receptor cytoplasmic fragment, Ribonuclease kappa, V-type proton ATPase 116 kDa subunit a 1, ... 著者 Wang, C, Jiang, W, Yang, K, Wang, X, Guo, Q, Brunger, A.T. 登録日 2024-05-11 公開日 2024-06-19 実験手法 ELECTRON MICROSCOPY (4.4 Å) 主引用文献 Structure and topography of the synaptic V-ATPase-synaptophysin complex. Nature, 2024
9BRA	Intact V-ATPase State 2 and synaptophysin complex in mouse brain isolated synaptic vesicles 分子名称: Renin receptor cytoplasmic fragment, Ribonuclease kappa, Synaptophysin, ... 著者 Wang, C, Jiang, W, Yang, K, Wang, X, Guo, Q, Brunger, A.T. 登録日 2024-05-11 公開日 2024-06-19 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 Structure and topography of the synaptic V-ATPase-synaptophysin complex. Nature, 2024
9BRR	Intact V-ATPase State 3 in synaptophysin knock-out isolated synaptic vesicles 分子名称: Renin receptor cytoplasmic fragment, Ribonuclease kappa, V-type proton ATPase 116 kDa subunit a 1, ... 著者 Wang, C, Jiang, W, Yang, K, Wang, X, Guo, Q, Brunger, A.T. 登録日 2024-05-11 公開日 2024-06-19 実験手法 ELECTRON MICROSCOPY (4.5 Å) 主引用文献 Structure and topography of the synaptic V-ATPase-synaptophysin complex. Nature, 2024
9BRQ	Intact V-ATPase State 3 and synaptophysin complex in mouse brain isolated synaptic vesicles 分子名称: Renin receptor cytoplasmic fragment, Ribonuclease kappa, Synaptophysin, ... 著者 Wang, C, Jiang, W, Yang, K, Wang, X, Guo, Q, Brunger, A.T. 登録日 2024-05-11 公開日 2024-06-19 実験手法 ELECTRON MICROSCOPY (4.3 Å) 主引用文献 Structure and topography of the synaptic V-ATPase-synaptophysin complex. Nature, 2024
4WKY	Streptomcyes albus JA3453 oxazolomycin ketosynthase domain OzmN KS2 分子名称: 1,2-ETHANEDIOL, Beta-ketoacyl synthase, GLYCEROL, ... 著者 Cuff, M.E, Mack, J.C, Endres, M, Babnigg, G, Bingman, C.A, Yennamalli, R, Lohman, J.R, Ma, M, Shen, B, Phillips Jr, G.N, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Enzyme Discovery for Natural Product Biosynthesis (NatPro) 登録日 2014-10-03 公開日 2014-10-29 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural and evolutionary relationships of "AT-less" type I polyketide synthase ketosynthases. Proc.Natl.Acad.Sci.USA, 112, 2015
9B8P	Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3, V1 分子名称: ADENOSINE-5'-DIPHOSPHATE, ATPase H+-transporting V1 subunit D, H(+)-transporting two-sector ATPase, ... 著者 Coupland, E.M, Rubinstein, J.L. 登録日 2024-03-31 公開日 2024-07-03 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 High-resolution electron cryomicroscopy of V-ATPase in native synaptic vesicles. Science, 385, 2024
9BRD	Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3 分子名称: (7R)-4,7-DIHYDROXY-N,N,N-TRIMETHYL-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOSAN-1-AMINIUM 4-OXIDE, 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Coupland, C.E, Rubinstein, J.L. 登録日 2024-05-11 公開日 2024-06-26 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 High-resolution electron cryomicroscopy of V-ATPase in native synaptic vesicles. Science, 385, 2024
1PYV	NMR solution structure of the mitochondrial F1b presequence peptide from Nicotiana plumbaginifolia 分子名称: ATP synthase beta chain, mitochondrial precursor 著者 Moberg, P, Nilsson, S, Stahl, A, Eriksson, A.C, Glaser, E, Maler, L. 登録日 2003-07-09 公開日 2004-04-06 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 NMR solution structure of the mitochondrial F1beta presequence from Nicotiana plumbaginifolia J.Mol.Biol., 336, 2004
2HS0	T. maritima PurL complexed with ATP 分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Phosphoribosylformylglycinamidine synthase II 著者 Ealick, S.E, Morar, M. 登録日 2006-07-20 公開日 2007-01-09 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.52 Å) 主引用文献 Complexed Structures of Formylglycinamide Ribonucleotide Amidotransferase from Thermotoga maritima Describe a Novel ATP Binding Protein Superfamily Biochemistry, 45, 2006
8FV7	E coli. CTP synthase in complex with dF-dCTP + ATP 分子名称: 2'-deoxy-2',2'-difluorocytidine 5'-(tetrahydrogen triphosphate), ADENOSINE-5'-TRIPHOSPHATE, CTP synthase, ... 著者 Holyoak, T, McLeod, M.J, Tran, N. 登録日 2023-01-18 公開日 2023-05-24 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.08 Å) 主引用文献 A metal-dependent conformational change provides a structural basis for the inhibition of CTP synthase by gemcitabine-5'-triphosphate. Protein Sci., 32, 2023
4DLK	Crystal Structure of ATP-Ca++ complex of purK: N5-carboxyaminoimidazole ribonucleotide synthetase 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, PHOSPHATE ION, ... 著者 Fung, L.W, Tuntland, M.L, Santarsiero, B.D, Johnson, M.E. 登録日 2012-02-06 公開日 2013-02-06 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.02 Å) 主引用文献 Elucidation of the bicarbonate binding site and insights into the carboxylation mechanism of (N(5))-carboxyaminoimidazole ribonucleotide synthase (PurK) from Bacillus anthracis. Acta Crystallogr.,Sect.D, 70, 2014

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