PDB: 238582 件ウェブページステータス検索Chemie searchBIRD

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5KG1	Human DNA polymerase eta-DNA ternary complex: reaction first with 1 mM Mn2+ for 1800s then with 5 mM Mn2+ for 60s at 30 degree 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DIPHOSPHATE, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*TP*A)-3'), ... 著者 Gao, Y, Yang, W. 登録日 2016-06-12 公開日 2016-06-22 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.62 Å) 主引用文献 Capture of a third Mg2+ is essential for catalyzing DNA synthesis. Science, 352, 2016
2IHU	Carboxyethylarginine synthase from Streptomyces clavuligerus: putative reaction intermediate complex 分子名称: (3Z)-4-{[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]AMINO}-3-MERCAPTOPENT-3-EN-1-YL TRIHYDROGEN DIPHOSPHATE, 5-(2-{[HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}ETHYL)-2-[(1Z)-1-HYDROXY-3-(PHOSPHONOOXY)PROP-1-EN-1-YL]-3-{[(4Z)-4-IMINO-2- METHYL-4,5-DIHYDROPYRIMIDIN-5-YL]METHYL}-4-METHYL-1,3-THIAZOL-3-IUM, Carboxyethylarginine synthase, ... 著者 Caines, M.E, Schofield, C.J. 登録日 2006-09-27 公開日 2007-11-27 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Structural and mechanistic studies on N(2)-(2-carboxyethyl)arginine synthase. Biochem.Biophys.Res.Commun., 385, 2009
2INV	Crystal structure of Inulin fructotransferase in the presence of di-fructose 分子名称: Inulin fructotransferase, PHOSPHONATE, beta-D-fructofuranose-(2-1)-beta-D-fructofuranose 著者 Rhee, S, Jung, W.S. 登録日 2006-10-09 公開日 2006-12-26 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural and functional insights into intramolecular fructosyl transfer by inulin fructotransferase J.Biol.Chem., 282, 2007
2IOH	Crystal structure of phosphonoacetaldehyde hydrolase with a K53R mutation 分子名称: MAGNESIUM ION, PHOSPHATE ION, Phosphonoacetaldehyde hydrolase 著者 Allen, K.A, Lahiri, S.D, Zhang, G, Dunaway-Mariano, D, Peisach, E. 登録日 2006-10-10 公開日 2007-08-07 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Diversification of function in the haloacid dehalogenase enzyme superfamily: The role of the cap domain in hydrolytic phosphoruscarbon bond cleavage. Bioorg.Chem., 34, 2006
5KF4	Crystal structure of FN3 domain (Residues P368-P466) of Human collagen XX 分子名称: Collagen alpha-1(XX) chain 著者 Xie, Y, Cheng, Z, Zhao, J. 登録日 2016-06-12 公開日 2016-07-06 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of the second fibronectin type III (FN3) domain from human collagen alpha 1 type XX Acta Crystallogr F Struct Biol Commun, 73, 2017
2IIF	single chain Integration Host Factor mutant protein (scIHF2-K45aE) in complex with DNA 分子名称: DNA (5'-D(*DGP*DCP*DTP*DTP*DAP*DTP*DCP*DAP*DAP*DTP*DTP*DTP*DGP*DTP*DTP*DGP*DCP*DAP*DCP*DC)-3'), DNA (5'-D(*DGP*DGP*DCP*DCP*DAP*DAP*DAP*DAP*DAP*DAP*DGP*DCP*DAP*DTP*DT)-3'), Integration host factor, ... 著者 Bao, Q, Droege, P, Davey, C.A. 登録日 2006-09-28 公開日 2007-02-20 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.72 Å) 主引用文献 A Divalent Metal-mediated Switch Controlling Protein-induced DNA Bending J.Mol.Biol., 367, 2007
5KFC	Human DNA polymerase eta-DNA ternary complex: reaction with 1 mM Mn2+ for 180s 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ... 著者 Gao, Y, Yang, W. 登録日 2016-06-12 公開日 2016-06-22 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Capture of a third Mg2+ is essential for catalyzing DNA synthesis. Science, 352, 2016
2IIR	Acetate kinase from a hypothermophile Thermotoga maritima 分子名称: Acetate kinase 著者 Mukhopadhyay, S, Hasson, M.S, Sanders, D.A. 登録日 2006-09-28 公開日 2007-09-11 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Acetate kinase from a hypothermophile Thermotoga maritima To be Published
5KFL	Human DNA polymerase eta-DNA ternary complex: reaction with 10 mM Mn2+ for 600s 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DIPHOSPHATE, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*TP*A)-3'), ... 著者 Gao, Y, Yang, W. 登録日 2016-06-12 公開日 2016-06-22 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Capture of a third Mg2+ is essential for catalyzing DNA synthesis. Science, 352, 2016
5KFX	Human DNA polymerase eta R61A-DNA ternary complex: reaction with 1 mM Mg2+ for 300s 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ... 著者 Gao, Y, Yang, W. 登録日 2016-06-12 公開日 2016-06-22 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.52 Å) 主引用文献 Capture of a third Mg2+ is essential for catalyzing DNA synthesis. Science, 352, 2016
2IL1	Crystal structure of a predicted human GTPase in complex with GDP 分子名称: CALCIUM ION, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... 著者 Wang, J, Shen, Y, Tempel, W, Landry, R, Arrowsmith, C.H, Edwards, A.M, Sundstrom, M, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC) 登録日 2006-10-02 公開日 2006-10-10 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structure of a predicted human GTPase in complex with GDP To be Published
5KI9	Crystal structure of human beta-defensin 4 (HBD4) 分子名称: Beta-defensin 104, SULFATE ION, trifluoroacetic acid 著者 Jacek, L, Adam, P, Marzenam, P. 登録日 2016-06-16 公開日 2017-06-28 最終更新日 2025-04-02 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Human beta-Defensin 4: defensin without the "twist" To Be Published
2IRW	Human 11-beta-Hydroxysteroid Dehydrogenase (HSD1) with NADP and Adamantane Ether Inhibitor 分子名称: (1S,3R,4S,5S,7S)-4-{[2-(4-METHOXYPHENOXY)-2-METHYLPROPANOYL]AMINO}ADAMANTANE-1-CARBOXAMIDE, Corticosteroid 11-beta-dehydrogenase isozyme 1, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE 著者 Longenecker, K.L, Patel, J.R, Russell, J, Qin, W. 登録日 2006-10-16 公開日 2007-01-23 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Discovery of adamantane ethers as inhibitors of 11beta-HSD-1: Synthesis and biological evaluation. Bioorg.Med.Chem.Lett., 17, 2007
5KII	PSEUDO T4 LYSOZYME MUTANT - Y88PHE-METHYL 分子名称: 2-HYDROXYETHYL DISULFIDE, Endolysin, PHOSPHATE ION 著者 Scholfield, M.R. 登録日 2016-06-16 公開日 2017-04-12 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (1.56 Å) 主引用文献 Structure-Energy Relationships of Halogen Bonds in Proteins. Biochemistry, 56, 2017
5JP6	Bdellovibrio bacteriovorus peptidoglycan deacetylase Bd3279 分子名称: MAGNESIUM ION, Putative polysaccharide deacetylase, ZINC ION 著者 Lovering, A.L. 登録日 2016-05-03 公開日 2016-06-01 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Interrupting peptidoglycan deacetylation during Bdellovibrio predator-prey interaction prevents ultimate destruction of prey wall, liberating bacterial-ghosts. Sci Rep, 6, 2016
5KIS	YenB/RHS2 complex 分子名称: CALCIUM ION, CHLORIDE ION, RHS2, ... 著者 Busby, J.N, Hurst, M.R.H, Lott, J.S. 登録日 2016-06-16 公開日 2017-08-09 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structure of a new BC complex from Yersinia entomophaga To Be Published
6LH4	Crystal structural of MacroD1-ADPr complex 分子名称: ADP-ribose glycohydrolase MACROD1, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE 著者 Yang, X, Ma, Y, Li, Y. 登録日 2019-12-06 公開日 2020-12-09 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.999 Å) 主引用文献 Molecular basis for the MacroD1-mediated hydrolysis of ADP-ribosylation. DNA Repair (Amst), 94, 2020
5JQ0	Crystal structure of human carbonic anhydrase II in complex with Benzoxaborole at pH=8.7 分子名称: 1,1-dihydroxy-1,3-dihydro-2,1-benzoxaborol-1-ium, Carbonic anhydrase 2, ZINC ION 著者 Alterio, V, Esposito, D, Di Fiore, A, De Simone, G. 登録日 2016-05-04 公開日 2016-10-19 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Benzoxaborole as a new chemotype for carbonic anhydrase inhibition. Chem.Commun.(Camb.), 52, 2016
2ITC	Potassium Channel KcsA-Fab complex in Sodium Chloride 分子名称: Antibody Fab fragment heavy chain, Antibody Fab fragment light chain, SODIUM ION, ... 著者 Lockless, S.W, Zhou, M, MacKinnon, R. 登録日 2006-10-19 公開日 2007-05-15 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structural and Thermodynamic Properties of Selective Ion Binding in a K(+) Channel. Plos Biol., 5, 2007
5JQL	Crystal Structure of Phosphatidic acid Transporter Ups1/Mdm35 Void of Bound Phospholipid from Saccharomyces Cerevisiae at 2.9 Angstroms Resolution 分子名称: Mitochondrial distribution and morphology protein 35, Protein UPS1, mitochondrial 著者 Lu, J, Chan, K.C, Zhai, Y, Fan, J, Sun, F. 登録日 2016-05-05 公開日 2017-07-12 最終更新日 2024-11-20 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Molecular mechanism of mitochondrial phosphatidate transfer by Ups1 Commun Biol, 2020
5JRL	Crystal Structure of the Sphingopyxin I Lasso Peptide Isopeptidase SpI-IsoP (Native) 分子名称: Dipeptidyl aminopeptidases/acylaminoacyl-peptidases-like protein 著者 Fage, C.D, Hegemann, J.D, Bange, G, Marahiel, M.A. 登録日 2016-05-06 公開日 2016-09-14 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structure and Mechanism of the Sphingopyxin I Lasso Peptide Isopeptidase. Angew.Chem.Int.Ed.Engl., 55, 2016
5JS5	Nitric oxide complex of the L16F mutant of cytochrome c prime from Alcaligenes xylosoxidans 分子名称: ASCORBIC ACID, Cytochrome c', HEME C, ... 著者 Kekilli, D, Strange, R.W, Hough, M.A. 登録日 2016-05-07 公開日 2017-03-08 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Engineering proximal vs. distal heme-NO coordination via dinitrosyl dynamics: implications for NO sensor design. Chem Sci, 8, 2017
5JSJ	Crystal structure of Spindlin1 bound to compound EML631 分子名称: CHLORIDE ION, MAGNESIUM ION, Spindlin-1, ... 著者 Su, X, Li, H. 登録日 2016-05-08 公開日 2017-05-24 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.348 Å) 主引用文献 Developing Spindlin1 small-molecule inhibitors by using protein microarrays Nat. Chem. Biol., 13, 2017
5JSM	BRAFV600E Kinase Domain In Complex with Chemically Linked Vemurafenib Inhibitor VEM-3-VEM 分子名称: BENZAMIDINE, CHLORIDE ION, DIMETHYL SULFOXIDE, ... 著者 Grasso, M.J, Marmorstein, R. 登録日 2016-05-08 公開日 2016-09-14 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.19 Å) 主引用文献 Chemically Linked Vemurafenib Inhibitors Promote an Inactive BRAF(V600E) Conformation. Acs Chem.Biol., 11, 2016
1L3W	C-cadherin Ectodomain 分子名称: 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... 著者 Boggon, T.J, Murray, J, Chappuis-Flament, S, Wong, E, Gumbiner, B.M, Shapiro, L. 登録日 2002-03-01 公開日 2002-04-26 最終更新日 2024-12-25 実験手法 X-RAY DIFFRACTION (3.08 Å) 主引用文献 C-cadherin ectodomain structure and implications for cell adhesion mechanisms Science, 296, 2002

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