PDB: 238582 件ウェブページステータス検索Chemie searchBIRD

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9BJY	Crystal structure of RidA family protein PA5083 from Pseudomonas aeruginosa with TMAO bound 分子名称: RidA family protein, SULFATE ION, trimethylamine oxide 著者 Zhou, D, Chen, L, Rose, J.P, Wang, B.C. 登録日 2024-04-26 公開日 2024-09-04 実験手法 X-RAY DIFFRACTION (1.58 Å) 主引用文献 Structure of the RidA protein PA5083 from Pseudomonas aeruginosa with TMAO bound To Be Published
8HLC	S protein of SARS-CoV-2 in complex with 3711 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... 著者 Zhang, Y.Y, Guo, Y.Y, Zhou, Q. 登録日 2022-11-29 公開日 2024-06-05 最終更新日 2025-04-16 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Defining the features and structure of neutralizing antibody targeting the silent face of the SARS-CoV-2 spike N-terminal domain. MedComm (2020), 5, 2024
9BEL	Tungstate binding protein (Tungbindin) from Eubacterium limosum with five Tungstates bound 分子名称: Molybdenum-pterin binding domain-containing protein, SULFATE ION, TUNGSTATE(VI)ION 著者 Zhou, D, Rose, J.P, Chen, L, Wang, B.C. 登録日 2024-04-15 公開日 2024-09-04 最終更新日 2025-04-23 実験手法 X-RAY DIFFRACTION (2.68 Å) 主引用文献 Storage of the vital metal tungsten in a dominant SCFA-producing human gut microbe Eubacterium limosum and implications for other gut microbes. Mbio, 16, 2025
5KB1	Crystal Structure of a Tris-thiolate Hg(II) Complex in a de Novo Three Stranded Coiled Coil Peptide 分子名称: CHLORIDE ION, Hg(II)Zn(II)(GRAND Coil Ser-L16CL30H)3+, MERCURY (II) ION, ... 著者 Ruckcthong, L, Zastrow, M.L, Stuckey, J.A, Pecoraro, V.L. 登録日 2016-06-02 公開日 2016-08-31 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.09 Å) 主引用文献 A Crystallographic Examination of Predisposition versus Preorganization in de Novo Designed Metalloproteins. J.Am.Chem.Soc., 138, 2016
8HW7	Crystal structure of Heterodera glycines chitinase 2 D129A/E131A mutant in complex with chitopentaose 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitinase 著者 Chen, W, Chen, Q, Wang, D, Yang, Q. 登録日 2022-12-29 公開日 2024-06-05 最終更新日 2024-12-18 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 A soybean cyst nematode suppresses microbial plant symbionts using a lipochitooligosaccharide-hydrolysing enzyme. Nat Microbiol, 9, 2024
2IHY	Structure of the Staphylococcus aureus putative ATPase subunit of an ATP-binding cassette (ABC) transporter 分子名称: ABC transporter, ATP-binding protein, SULFATE ION 著者 McGrath, T.E, Yu, C.S, Romanov, V, Lam, R, Dharamsi, A, Virag, C, Mansoury, K, Thambipillai, D, Richards, D, Guthrie, J, Edwards, A.M, Pai, E.F, Chirgadze, N.Y. 登録日 2006-09-27 公開日 2007-09-18 最終更新日 2024-10-09 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure of the Staphylococcus aureus putative ATPase subunit of an ATP-binding cassette (ABC) transporter To be Published
9BQ4	YTP-E E148D, a weakly yellow thermostable protein 分子名称: Weakly yellow thermostable protein YTP-E 著者 Padgett, C, Ogbeifun, V, DeVore, N.M. 登録日 2024-05-09 公開日 2024-09-04 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 The Crystal Structure of Thermal Green Protein Q66E (TGP-E) and Yellow Thermostable Protein (YTP-E) E148D SynBio, 2, 2024
8HLD	S protein of SARS-CoV-2 in complex with 26434 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ... 著者 Zhang, Y.Y, Guo, Y.Y, Zhou, Q. 登録日 2022-11-29 公開日 2024-06-05 最終更新日 2025-04-16 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Defining the features and structure of neutralizing antibody targeting the silent face of the SARS-CoV-2 spike N-terminal domain. MedComm (2020), 5, 2024
5KDZ	The crystal structure of the T252A mutant of CYP199A4 in complex with 4-methoxybenzoate 分子名称: 4-METHOXYBENZOIC ACID, CHLORIDE ION, Cytochrome P450, ... 著者 Coleman, T, Bruning, J.B, Bell, S.G. 登録日 2016-06-08 公開日 2018-02-07 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (1.424 Å) 主引用文献 The crystal structure of the T252A mutant of CYP199A4 in complex with 4-methoxybenzoate To Be Published
9BDD	Cryo-EM Structure of Non-Cognate Substrate Bound in the Entry Site (ES) of Human Mitochondrial Transcription Elongation Complex 分子名称: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, DNA-directed RNA polymerase, mitochondrial, ... 著者 Herbine, K.H, Nayak, A.R, Temiakov, D. 登録日 2024-04-11 公開日 2024-09-04 実験手法 ELECTRON MICROSCOPY (2.86 Å) 主引用文献 Structural basis for substrate binding and selection by human mitochondrial RNA polymerase. Nat Commun, 15, 2024
2ID0	Escherichia coli RNase II 分子名称: Exoribonuclease 2, MANGANESE (II) ION 著者 Zuo, Y, Zhang, J, Wang, Y, Malhotra, A. 登録日 2006-09-13 公開日 2006-10-03 最終更新日 2024-11-13 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Structural Basis for Processivity and Single-Strand Specificity of RNase II. Mol.Cell, 24, 2006
8HW8	Crystal structure of Heterodera glycines chitinase 2 D129A/E131A mutant in complex with nodulation factor SmNF-V (C16:2, S) 分子名称: (2~{Z},9~{E})-~{N}-[(2~{R},3~{S},4~{R},5~{S},6~{S})-6-(hydroxymethyl)-2,4,5-tris(oxidanyl)oxan-3-yl]hexadeca-2,9-dienamide, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-6-O-sulfo-beta-D-glucopyranose, ... 著者 Chen, W, Chen, Q, Wang, D, Yang, Q. 登録日 2022-12-29 公開日 2024-06-05 最終更新日 2024-12-18 実験手法 X-RAY DIFFRACTION (1.57 Å) 主引用文献 A soybean cyst nematode suppresses microbial plant symbionts using a lipochitooligosaccharide-hydrolysing enzyme. Nat Microbiol, 9, 2024
9BLN	The structure of human Pdcd4 bound to the 40S-eIF4A-eIF3-eIF1 complex 分子名称: 40S ribosomal protein S14, ACETIC ACID, Eukaryotic initiation factor 4A-I, ... 著者 Brito Querido, J, Sokabe, M, Diaz-Lopez, I, Gordiyenko, Y, Zuber, P, Yifei, D, Albacete-Albacete, L, Ramakrishnan, V, S Fraser, C. 登録日 2024-04-30 公開日 2024-09-04 最終更新日 2024-10-09 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Human tumor suppressor protein Pdcd4 binds at the mRNA entry channel in the 40S small ribosomal subunit. Nat Commun, 15, 2024
9BKE	STRUCTURE OF 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE (HPAB), OXYGENASE COMPONENT FROM ESCHERICHIA COLI MUTANT XS6 WITH AMP BOUND 分子名称: 4-hydroxyphenylacetate 3-monooxygenase oxygenase component, ADENOSINE MONOPHOSPHATE 著者 Zhou, D, Chen, L, Rose, J.P, Wang, B.C. 登録日 2024-04-27 公開日 2024-09-04 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 STRUCTURE OF 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE (HPAB), OXYGENASE COMPONENT FROM ESCHERICHIA COLI MUTANT XS6 WITH AMP BOUND To Be Published
9BWT	human sodium chloride cotransporter NCC S344E in the phosphorylation state and in complex with hydrochlorothiazide 分子名称: 6-chloro-3,4-dihydro-2H-1,2,4-benzothiadiazine-7-sulfonamide 1,1-dioxide, ADENOSINE-5'-TRIPHOSPHATE, Solute carrier family 12 member 3 著者 Cao, E.H, Zhao, Y.X. 登録日 2024-05-21 公開日 2024-09-04 最終更新日 2025-05-21 実験手法 ELECTRON MICROSCOPY (2.5 Å) 主引用文献 Structural bases for Na + -Cl - cotransporter inhibition by thiazide diuretic drugs and activation by kinases. Nat Commun, 15, 2024
2II7	Anabaena sensory rhodopsin transducer 分子名称: Anabaena sensory rhodopsin transducer protein 著者 Vogeley, L. 登録日 2006-09-27 公開日 2007-03-20 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal structure of the anabaena sensory rhodopsin transducer. J.Mol.Biol., 367, 2007
5KEU	Crystal Structure of a Taurine Dioxygenase from Burkholderia xenovorans 分子名称: 1,2-ETHANEDIOL, FORMIC ACID, MAGNESIUM ION, ... 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2016-06-10 公開日 2016-06-22 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Crystal Structure of a Taurine Dioxygenase from Burkholderia xenovorans to be published
5KF8	X-ray structure of a glucosamine N-Acetyltransferase from Clostridium acetobutylicum in complex with glucosamine 分子名称: 1,2-ETHANEDIOL, 2-amino-2-deoxy-beta-D-glucopyranose, 3-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]PROPANE-1-SULFONIC ACID, ... 著者 Holden, H.M, Thoden, J.B, Dopkins, B.J, Tipton, P.A. 登録日 2016-06-12 公開日 2016-07-06 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural Studies on a Glucosamine/Glucosaminide N-Acetyltransferase. Biochemistry, 55, 2016
2IFC	The Structure of the Binary Complex of Oxalateacetate with Citrate Synthase from the Thermophilic Archaeon Thermolasma acidophilum 分子名称: Citrate Synthase, OXALOACETATE ION 著者 Lehmann, C. 登録日 2006-09-20 公開日 2007-10-02 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 To be anounced To be Published
1KZC	Complex of MBP-C and high-affinity linear trimannose 分子名称: CALCIUM ION, CHLORIDE ION, MANNOSE-BINDING PROTEIN C, ... 著者 Ng, K.K, Kolatkar, A.R, Park-Snyder, S, Feinberg, H, Clark, D.A, Drickamer, K, Weis, W.I. 登録日 2002-02-06 公開日 2002-07-05 最終更新日 2024-10-30 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Orientation of bound ligands in mannose-binding proteins. Implications for multivalent ligand recognition. J.Biol.Chem., 277, 2002
5KD2	BT_4244 metallopeptidase from Bacteroides thetaiotaomicron 分子名称: 1,2-ETHANEDIOL, ZINC ION, metallopeptidase 著者 Noach, I, Boraston, A.B. 登録日 2016-06-07 公開日 2017-01-11 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Recognition of protein-linked glycans as a determinant of peptidase activity. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
8HUE	Crystal structure of FGF2-M2 mutant - D28E/C78I/C96I/S137P 分子名称: 1,3,4,6-tetra-O-sulfo-beta-D-fructofuranose-(2-1)-2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose, Fibroblast growth factor 2 著者 Jung, Y.E, Cha, S.S, An, Y.J. 登録日 2022-12-23 公開日 2024-06-26 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (1.48 Å) 主引用文献 Structural and biochemical investigation into stable FGF2 mutants with novel mutation sites and hydrophobic replacements for surface-exposed cysteines. Plos One, 19, 2024
5KFE	Human DNA polymerase eta-DNA ternary complex: reaction with 1 mM Mn2+ for 600s 分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ... 著者 Gao, Y, Yang, W. 登録日 2016-06-12 公開日 2016-06-22 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Capture of a third Mg2+ is essential for catalyzing DNA synthesis. Science, 352, 2016
5KFO	Human DNA polymerase eta-DNA ternary complex with Sp-dATP-alpha-S: reaction with 1 mM Mn2+ for 1800s 分子名称: 2'-DEOXYADENOSINE 5'-O-(1-THIOTRIPHOSPHATE), CALCIUM ION, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), ... 著者 Gao, Y, Yang, W. 登録日 2016-06-12 公開日 2016-06-22 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.52 Å) 主引用文献 Capture of a third Mg2+ is essential for catalyzing DNA synthesis. Science, 352, 2016
5KET	Structure of the aldo-keto reductase from Coptotermes gestroi 分子名称: Aldo-keto reductase 1, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE 著者 Liberato, M.L, Campos, B.M, Tramontina, R, Squina, F.M. 登録日 2016-06-10 公開日 2017-01-18 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.85 Å) 主引用文献 The Coptotermes gestroi aldo-keto reductase: a multipurpose enzyme for biorefinery applications. Biotechnol Biofuels, 10, 2017

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