PDB: 97138 件ウェブページステータス検索Chemie searchBIRD

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8JVV	Crystal structure of the chimeric protein mkaL2_v1.1 分子名称: mkaL2_v1.1 著者 Yagi, S, Tagami, S. 登録日 2023-06-28 公開日 2024-07-03 最終更新日 2024-08-07 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 An ancestral fold reveals the evolutionary link between RNA polymerase and ribosomal proteins. Nat Commun, 15, 2024
8JVX	Crystal structure of the dimeric DZBB fold protein mkaL2_v1.2_Z 分子名称: mkaL2_v1.2_Z 著者 Yagi, S, Tagami, S. 登録日 2023-06-28 公開日 2024-07-03 最終更新日 2024-08-07 実験手法 X-RAY DIFFRACTION (1.801 Å) 主引用文献 An ancestral fold reveals the evolutionary link between RNA polymerase and ribosomal proteins. Nat Commun, 15, 2024
8JVO	Crystal structure of the chemically synthesized mk2h_deltaMILPYS peptide homodimer, DZBB form 分子名称: SULFATE ION, mk2h_deltaMILPYS 著者 Yagi, S, Tagami, S. 登録日 2023-06-28 公開日 2024-07-03 最終更新日 2024-08-07 実験手法 X-RAY DIFFRACTION (1.701 Å) 主引用文献 An ancestral fold reveals the evolutionary link between RNA polymerase and ribosomal proteins. Nat Commun, 15, 2024
3L3Q	Mouse importin alpha-pepTM NLS peptide complex 分子名称: CITRATE ANION, Importin subunit alpha-2, pepTM 著者 Takeda, A.A.S, Kobe, B, Fontes, M.R.M. 登録日 2009-12-17 公開日 2010-04-07 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Probing the specificity of binding to the major nuclear localization sequence-binding site of importin-alpha using oriented peptide library screening. J.Biol.Chem., 285, 2010
1P7T	Structure of Escherichia coli malate synthase G:pyruvate:acetyl-Coenzyme A abortive ternary complex at 1.95 angstrom resolution 分子名称: ACETYL COENZYME *A, DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, ... 著者 Anstrom, D.M, Kallio, K, Remington, S.J. 登録日 2003-05-05 公開日 2003-09-09 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Structure of the Escherichia Coli Malate Synthase G:pyruvate:acetyl-coenzyme A Abortive Ternary Complex at 1.95 Angstrom Resolution Protein Sci., 12, 2003
5A0B	Crystal Structure of human neutrophil elastase in complex with a dihydropyrimidone inhibitor 分子名称: (4R)-4-(4-cyanophenyl)-6-methyl-2-oxidanylidene-3-[2-oxidanylidene-2-(4-propan-2-ylpiperazin-1-yl)ethyl]-1-[3-(trifluoromethyl)phenyl]-4H-pyrimidine-5-carbonitrile, 2-acetamido-2-deoxy-beta-D-glucopyranose, DIMETHYL SULFOXIDE, ... 著者 vonNussbaum, F, Li, V.M.-J, Allerheiligen, S, Anlauf, S, Baerfacker, L, Bechem, M, Delbeck, M, Fitzgerald, M.F, Gerisch, M, Gielen-Haertwig, H, Haning, H, Karthaus, D, Lang, D, Lustig, K, Meibom, D, Mittendorf, J, Rosentreter, U, Schaefer, M, Schaefer, S, Schamberger, J, Telan, L.A, Tersteegen, A. 登録日 2015-04-17 公開日 2015-08-19 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (2.23 Å) 主引用文献 Freezing the Bioactive Conformation to Boost Potency: The Identification of BAY 85-8501, a Selective and Potent Inhibitor of Human Neutrophil Elastase for Pulmonary Diseases. ChemMedChem, 10, 2015
4D4O	Crystal Structure of the Kti11 Kti13 heterodimer Spacegroup P64 分子名称: FE (III) ION, PROTEIN ATS1, DIPHTHAMIDE BIOSYNTHESIS PROTEIN 3, ... 著者 Glatt, S, Mueller, C.W. 登録日 2014-10-30 公開日 2015-01-14 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.897 Å) 主引用文献 Structure of the Kti11/Kti13 Heterodimer and its Double Role in Modifications of tRNA and Eukaryotic Elongation Factor 2. Structure, 23, 2015
4ITE	Crystal structure of the human vitamin D receptor ligand binding domain complexed with 1alpha,25-Dihydroxy-2alpha-[2-(2H-tetrazol-2-yl)ethyl]vitamin D3 分子名称: (1R,2S,3S,5Z)-5-[(2E)-2-[(1R,3aS,7aR)-7a-methyl-1-[(2R)-6-methyl-6-oxidanyl-heptan-2-yl]-2,3,3a,5,6,7-hexahydro-1H-inden-4-ylidene]ethylidene]-4-methylidene-2-[2-(1,2,3,4-tetrazol-2-yl)ethyl]cyclohexane-1,3-diol, Vitamin D3 receptor 著者 Kakuda, S, Takimoto-Kamimura, M. 登録日 2013-01-18 公開日 2014-01-22 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.49 Å) 主引用文献 Synthesis of 2 alpha-heteroarylalkyl active vitamin d3 with therapeutic effect on enhancing bone mineral density in vivo ACS MED.CHEM.LETT., 4, 2013
5A6S	Crystal structure of the CTP1L endolysin reveals how its activity is regulated by a secondary translation product 分子名称: ENDOLYSIN, GLYCEROL, PENTAETHYLENE GLYCOL, ... 著者 Dunne, M, Leicht, S, Krichel, B, Mertens, H.D.T, Thompson, A, Krijgsveld, J, Svergun, D.I, GomezTorres, N, Garde, S, Uetrecht, C, Narbad, A, Mayer, M.J, Meijers, R. 登録日 2015-07-01 公開日 2015-12-30 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal Structure of the Ctp1L Endolysin Reveals How its Activity is Regulated by a Secondary Translation Product. J.Biol.Chem., 291, 2016
4GY0	Round 18 Arylesterase Variant of Phosphotriesterase 分子名称: ZINC ION, arylesterase variant of phosphotriesterase 著者 Jackson, C.J, Tokuriki, N, Tawfik, D.S. 登録日 2012-09-05 公開日 2013-08-21 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Diminishing returns and tradeoffs constrain the laboratory optimization of an enzyme Nat Commun, 3, 2012
4D4P	Crystal Structure of the Kti11 Kti13 heterodimer Spacegroup P65 分子名称: FE (III) ION, PROTEIN ATS1, DIPHTHAMIDE BIOSYNTHESIS PROTEIN 3, ... 著者 Glatt, S, Mueller, C.W. 登録日 2014-10-30 公開日 2015-01-14 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.999 Å) 主引用文献 Structure of the Kti11/Kti13 Heterodimer and its Double Role in Modifications of tRNA and Eukaryotic Elongation Factor 2. Structure, 23, 2015
6SGK	Nek2 kinase bound to inhibitor 102 分子名称: 2-phenylazanyl-9~{H}-purine-6-carbonitrile, Serine/threonine-protein kinase Nek2 著者 Richards, M.W, Mas-Droux, C.P, Bayliss, R. 登録日 2019-08-05 公開日 2020-06-17 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 2-Arylamino-6-ethynylpurines are cysteine-targeting irreversible inhibitors of Nek2 kinase. Rsc Med Chem, 11, 2020
6K5P	Structure of mosquito-larvicidal Binary toxin receptor, Cqm1 分子名称: ACETATE ION, Binary toxin receptor protein, CADMIUM ION, ... 著者 Kumar, V, Sharma, M. 登録日 2019-05-30 公開日 2019-09-11 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.805 Å) 主引用文献 Crystal structure of BinAB toxin receptor (Cqm1) protein and molecular dynamics simulations reveal the role of unique Ca(II) ion. Int.J.Biol.Macromol., 140, 2019
4E60	Interactions of Ba2+ with a non-self-complementary Z-type DNA duplex 分子名称: BARIUM ION, DNA (5'-D(*CP*AP*CP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*GP*TP*G)-3'), ... 著者 Mandal, P.K, Venkadesh, S, Gautham, N. 登録日 2012-03-15 公開日 2013-03-20 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.86 Å) 主引用文献 Interactions of Ba2+ with a non-self-complementary Z-type DNA duplex To be Published
6SLF	Nalpha-acylglutamine aminoacylase from Corynebacterium sp.releasing human axilla odorants co-crystallised with high affinity inhibitor 分子名称: (2~{S})-5-azanyl-2-[[[(3~{S})-3-methyl-5-phenyl-pentyl]-oxidanyl-phosphoryl]methyl]-5-oxidanylidene-pentanoic acid, 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ... 著者 Natsch, A, Emter, R. 登録日 2019-08-19 公開日 2020-03-11 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 The specific biochemistry of human axilla odour formation viewed in an evolutionary context. Philos.Trans.R.Soc.Lond.B Biol.Sci., 375, 2020
6SOR	20 minute Fe2+ soaked structure of SynFtn variant E62A 分子名称: CHLORIDE ION, FE (III) ION, Ferritin 著者 Hemmings, A.M, Bradley, J.M. 登録日 2019-08-29 公開日 2020-01-29 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.74 Å) 主引用文献 Routes of iron entry into, and exit from, the catalytic ferroxidase sites of the prokaryotic ferritin SynFtn. Dalton Trans, 49, 2020
3HA8	THE COMPLEX STRUCTURE OF THE MAP KINASE P38/Compound 14b 分子名称: Mitogen-activated protein kinase 14, N~2~-{4-[6-(3,4-dihydroquinolin-1(2H)-ylcarbonyl)-1H-benzimidazol-1-yl]-6-ethoxy-1,3,5-triazin-2-yl}-3-(2,2-dimethyl-4H-1,3-benzodioxin-6-yl)-N-methyl-L-alaninamide 著者 Zhao, B, Clark, M.A. 登録日 2009-05-01 公開日 2009-08-04 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.48 Å) 主引用文献 Design, synthesis and selection of DNA-encoded small-molecule libraries. Nat.Chem.Biol., 5, 2009
2K43	Acidic fibroblast growth factor solution structure in the FGF-1-C2A binary complex: key component in the fibroblast growthfactor non-classical pathway 分子名称: Heparin-binding growth factor 1 著者 Mohan, S.K, Yu, C. 登録日 2008-05-28 公開日 2009-06-02 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 FGF-1-C2A binary complex structure: key component in the acidic fibroblast growth factor release To be Published
4E4O	Interactions of Ba2+ with a non-self-complementary Z-type DNA duplex 分子名称: BARIUM ION, DNA (5'-D(*CP*AP*CP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*GP*TP*G)-3') 著者 Mandal, P.K, Venkadesh, S, Gautham, N. 登録日 2012-03-13 公開日 2013-03-13 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.72 Å) 主引用文献 Interactions of Ba2+ with a non-self-complementary Z-type DNA duplex To be Published
2LHP	High resolution NMR solution structure of helix H1 of the chimpanzee HAR1 RNA 分子名称: RNA (37-MER) 著者 Cevec, M, Ziegeler, M, Richter, C, Schwalbe, H. 登録日 2011-08-12 公開日 2012-07-25 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 NMR Studies of HAR1 RNA Secondary Structures Reveal Conformational Dynamics in the Human RNA. Chembiochem, 13, 2012
2K45	C2A domain of synaptototagmin I solution structure in the FGF-1-C2A binary complex: key component in the fibroblast growthfactor non-classical pathway 分子名称: Synaptotagmin-1 著者 Mohan, S.K, Yu, C. 登録日 2008-05-28 公開日 2009-06-02 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 FGF-1-C2A binary complex structure: key component in the acidic fibroblast growth factor release To be Published
1ZRE	4 crystal structures of CAP-DNA with all base-pair substitutions at position 6, CAP-[6G;17C]ICAP38 DNA 分子名称: 5'-D(*AP*TP*TP*TP*CP*GP*AP*AP*AP*AP*AP*TP*GP*GP*GP*AP*T)-3', 5'-D(*CP*TP*AP*GP*AP*TP*CP*CP*CP*AP*TP*TP*TP*TP*TP*CP*GP*AP*AP*AP*T)-3', ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, ... 著者 Berman, H.M, Napoli, A.A. 登録日 2005-05-19 公開日 2006-03-21 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps. J.Mol.Biol., 357, 2006
1ZRC	4 Crystal structures of CAP-DNA with all base-pair substitutions at position 6, CAP-ICAP38 DNA 分子名称: 5'-D(*AP*TP*TP*TP*CP*GP*AP*AP*AP*AP*AP*TP*GP*TP*GP*AP*T)-3', 5'-D(*CP*TP*AP*GP*AP*TP*CP*AP*CP*AP*TP*TP*TP*TP*TP*CP*GP*AP*AP*AP*T)-3', ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, ... 著者 Berman, H.M, Napoli, A.A. 登録日 2005-05-19 公開日 2006-03-21 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps. J.Mol.Biol., 357, 2006
3WI3	Crystal Structure of the Sld3/Treslin domain from yeast Sld3 分子名称: 1,2-ETHANEDIOL, DNA replication regulator SLD3, SULFATE ION 著者 Itou, H, Araki, H, Shirakihara, Y. 登録日 2013-09-05 公開日 2014-08-20 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal structure of the homology domain of the eukaryotic DNA replication proteins sld3/treslin. Structure, 22, 2014
6Y2K	Crystal structure of beta-galactosidase from the psychrophilic Marinomonas ef1 分子名称: CHLORIDE ION, GLYCEROL, beta-galactosidase 著者 Mangiagalli, M, Lapi, M, Maione, S, Orlando, M, Brocca, S, Pesce, A, Barbiroli, A, Pucciarelli, S, Camilloni, C, Lotti, M. 登録日 2020-02-16 公開日 2020-05-20 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 The co-existence of cold activity and thermal stability in an Antarctic GH42 beta-galactosidase relies on its hexameric quaternary arrangement. Febs J., 288, 2021

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