PDB: 78 件ウェブページステータス検索Chemie searchBIRD

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5YKI	Crystal structure of the engineered nine-repeat PUF domain in complex with cognate 9nt-RNA 分子名称: Pumilio homolog 1, RNA (5'-R(*UP*GP*UP*UP*GP*UP*AP*UP*A)-3') 著者 Zhao, Y.Y, Wang, J, Li, H.T, Wang, Z.X, Wu, J.W. 登録日 2017-10-14 公開日 2018-03-14 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Expanding RNA binding specificity and affinity of engineered PUF domains. Nucleic Acids Res., 46, 2018
5WZG	Structure of APUM23-GAAUUGACGG 分子名称: Pumilio homolog 23, RNA (5'-R(*GP*AP*AP*UP*UP*GP*AP*CP*GP*G)-3') 著者 Bao, H, Wang, N, Wang, C, Jiang, Y, Wu, J, Shi, Y. 登録日 2017-01-18 公開日 2017-09-27 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Structural basis for the specific recognition of 18S rRNA by APUM23. Nucleic Acids Res., 45, 2017
5WZJ	Structure of APUM23-GGAUUUGACGG 分子名称: Pumilio homolog 23, RNA (5'-R(*GP*GP*AP*UP*UP*UP*GP*AP*CP*GP*G)-3') 著者 Bao, H, Wang, N, Wang, C, Jiang, Y, Wu, J, Shi, Y. 登録日 2017-01-18 公開日 2017-09-27 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.101 Å) 主引用文献 Structural basis for the specific recognition of 18S rRNA by APUM23. Nucleic Acids Res., 45, 2017
5WZH	Structure of APUM23-GGAAUUGACGG 分子名称: Pumilio homolog 23, RNA (5'-R(*GP*GP*AP*AP*UP*UP*GP*AP*CP*GP*G)-3') 著者 Bao, H, Wang, N, Wang, C, Jiang, Y, Wu, J, Shi, Y. 登録日 2017-01-18 公開日 2017-09-27 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.509 Å) 主引用文献 Structural basis for the specific recognition of 18S rRNA by APUM23. Nucleic Acids Res., 45, 2017
5WZK	Structure of APUM23-deletion-of-insert-region-GGAAUUGACGG 分子名称: Pumilio homolog 23, RNA (5'-R(*GP*GP*AP*AP*UP*UP*GP*AP*CP*GP*G)-3') 著者 Bao, H, Wang, N, Wang, C, Jiang, Y, Wu, J, Shi, Y. 登録日 2017-01-18 公開日 2017-09-27 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural basis for the specific recognition of 18S rRNA by APUM23. Nucleic Acids Res., 45, 2017
5WZI	Structure of APUM23-GGAGUUGACGG 分子名称: Pumilio homolog 23, RNA (5'-R(*GP*GP*AP*GP*UP*UP*GP*AP*CP*GP*G)-3') 著者 Bao, H, Wang, N, Wang, C, Jiang, Y, Wu, J, Shi, Y. 登録日 2017-01-18 公開日 2017-09-27 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 Structural basis for the specific recognition of 18S rRNA by APUM23. Nucleic Acids Res., 45, 2017
5YKH	Crystal structure of the engineered nine-repeat PUF domain 分子名称: PHOSPHATE ION, Pumilio homolog 1 著者 Zhao, Y.Y, Wang, J, Li, H.T, Wang, Z.X, Wu, J.W. 登録日 2017-10-14 公開日 2018-03-14 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.457 Å) 主引用文献 Expanding RNA binding specificity and affinity of engineered PUF domains. Nucleic Acids Res., 46, 2018
4DZS	Crystal structure of yeast Puf4p RNA binding domain in complex with HO-4BE mutant RNA 分子名称: 5'-R(*UP*GP*UP*AP*UP*CP*AP*UP*A)-3', Pumilio homology domain family member 4 著者 Qiu, C, Hall, T.M.T. 登録日 2012-03-01 公開日 2012-04-25 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.14 Å) 主引用文献 Patterns and plasticity in RNA-protein interactions enable recruitment of multiple proteins through a single site. Proc.Natl.Acad.Sci.USA, 109, 2012
6NY5	Crystal structure of the PUM-HD domain of S. pombe Puf1 in complex with RNA 分子名称: MAGNESIUM ION, Pumilio domain-containing protein C56F2.08c, RNA (5'-R(P*UP*UP*AP*AP*UP*AP*AP*CP*UP*UP*AP*AP*U)-3'), ... 著者 Qiu, C, Hall, T.M.T. 登録日 2019-02-11 公開日 2019-07-03 最終更新日 2020-01-15 実験手法 X-RAY DIFFRACTION (3.002 Å) 主引用文献 Distinct RNA-binding modules in a single PUF protein cooperate to determine RNA specificity. Nucleic Acids Res., 47, 2019
6NWW	Crystal structure of the RRM domain of S. pombe Puf1 in the P212121 space group 分子名称: CHLORIDE ION, Pumilio domain-containing protein C56F2.08c 著者 Qiu, C, Hall, T.M.T. 登録日 2019-02-07 公開日 2019-07-03 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.06 Å) 主引用文献 Distinct RNA-binding modules in a single PUF protein cooperate to determine RNA specificity. Nucleic Acids Res., 47, 2019
6NX5	Crystal structure of the RRM domain of S. pombe Puf1 in the P21 space group 分子名称: 1,2-ETHANEDIOL, Pumilio domain-containing protein C56F2.08c 著者 Qiu, C, Hall, T.M.T. 登録日 2019-02-08 公開日 2019-07-03 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.554 Å) 主引用文献 Distinct RNA-binding modules in a single PUF protein cooperate to determine RNA specificity. Nucleic Acids Res., 47, 2019
3BWT	Crystal structure of the RNA binding domain of Puf4 from Saccharomyces cerevisiae 分子名称: Protein PUF4 著者 Miller, M.T, Higgin, J.J, Hall, T.M.T. 登録日 2008-01-10 公開日 2008-03-11 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.69 Å) 主引用文献 Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p Nat.Struct.Mol.Biol., 15, 2008
3BX2	Puf4 RNA binding domain bound to HO endonuclease RNA 3' UTR recognition sequence 分子名称: HO endonuclease 3' UTR binding sequence, Protein PUF4, SODIUM ION, ... 著者 Miller, M.T, Higgin, J.J, Hall, T.M.T. 登録日 2008-01-11 公開日 2008-03-11 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.84 Å) 主引用文献 Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p Nat.Struct.Mol.Biol., 15, 2008
3BX3	Puf4 T650C/C724R Mutant bound to Cox17 RNA 3' UTR recognition sequence 分子名称: COX17 RNA target sequence, Protein PUF4, SULFATE ION 著者 Miller, M.T, Higgin, J.J, Hall, T.M.T. 登録日 2008-01-11 公開日 2008-03-11 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p Nat.Struct.Mol.Biol., 15, 2008
5SVD	Nop9, a new PUF-like protein, prevents premature pre-rRNA cleavage to correctly process mature 18S rRNA 分子名称: Nucleolar protein 9 著者 Zhang, J, Qiu, C, Hall, T. 登録日 2016-08-05 公開日 2016-10-26 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Nop9 is a PUF-like protein that prevents premature cleavage to correctly process pre-18S rRNA. Nat Commun, 7, 2016
5WTX	Structure of Nop9 分子名称: Nucleolar protein 9 著者 Ye, K, Wang, B. 登録日 2016-12-15 公開日 2017-01-25 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (3.074 Å) 主引用文献 Nop9 binds the central pseudoknot region of 18S rRNA Nucleic Acids Res., 45, 2017
5WTY	Structure of Nop9 RNA complex 分子名称: Nucleolar protein 9, RNA (5'-R(*AP*AP*AP*GP*GP*AP*AP*UP*UP*GP*AP*CP*GP*GP*AP*AP*GP*G)-3') 著者 Ye, K, Wang, B. 登録日 2016-12-15 公開日 2017-01-25 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.785 Å) 主引用文献 Nop9 binds the central pseudoknot region of 18S rRNA Nucleic Acids Res., 45, 2017
3V71	Crystal structure of PUF-6 in complex with 5BE13 RNA 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Puf (Pumilio/fbf) domain-containing protein 7, confirmed by transcript evidence, ... 著者 Qiu, C, Kershner, A, Wang, Y, Holley, C.H, Wilinski, D, Keles, S, Kimble, J, Wickens, M, Hall, T.M.T. 登録日 2011-12-20 公開日 2012-01-04 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.902 Å) 主引用文献 Divergence of PUF protein specificity through variations in an RNA-binding pocket J.Biol.Chem., 2012
6NOD	Crystal structure of C. elegans PUF-8 in complex with RNA 分子名称: PUF (Pumilio/FBF) domain-containing, RNA (5'-R(P*UP*GP*UP*AP*UP*AP*UP*A)-3') 著者 Wang, Y, McCann, K.L, Qiu, C, Hall, T.M.T. 登録日 2019-01-16 公開日 2019-01-30 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.547 Å) 主引用文献 Engineering a conserved RNA regulatory protein repurposes its biological function in vivo . Elife, 8, 2019
3K4E	Puf3 RNA binding domain bound to Cox17 RNA 3' UTR recognition sequence site A 分子名称: RNA (5'-R(P*CP*UP*UP*GP*UP*AP*UP*AP*UP*A)-3'), mRNA-binding protein PUF3 著者 Zhu, D, Stumpf, C.R, Krahn, J.M, Wickens, M, Hall, T.M.T. 登録日 2009-10-05 公開日 2009-10-27 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 A 5' cytosine binding pocket in Puf3p specifies regulation of mitochondrial mRNAs. Proc.Natl.Acad.Sci.USA, 106, 2009
3K49	Puf3 RNA binding domain bound to Cox17 RNA 3' UTR recognition sequence site B 分子名称: CITRIC ACID, RNA (5'-R(*CP*CP*UP*GP*UP*AP*AP*AP*UP*A)-3'), mRNA-binding protein PUF3 著者 Zhu, D, Stumpf, C.R, Krahn, J.M, Wickens, M, Hall, T.M.T. 登録日 2009-10-05 公開日 2009-10-27 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 A 5' cytosine binding pocket in Puf3p specifies regulation of mitochondrial mRNAs. Proc.Natl.Acad.Sci.USA, 106, 2009
6WPI	Crystal structure of Nop9 in complex with ITS1 RNA 分子名称: 3,3',3''-phosphanetriyltripropanoic acid, GLYCEROL, Nucleolar protein 9, ... 著者 Zhang, J, Qiu, C, Hall, T.M.T. 登録日 2020-04-27 公開日 2020-05-20 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.02 Å) 主引用文献 Nop9 recognizes structured and single-stranded RNA elements of preribosomal RNA. Rna, 26, 2020
7RZZ	Crystal structure of FBF-2 in complex with LST-1 site A peptide and compact FBE RNA 分子名称: Fem-3 mRNA-binding factor 2, Lateral Signaling Target, RNA 著者 Qiu, C, Hall, T.M.T. 登録日 2021-08-28 公開日 2022-04-13 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.39 Å) 主引用文献 Bipartite interaction sites differentially modulate RNA-binding affinity of a protein complex essential for germline stem cell self-renewal. Nucleic Acids Res., 50, 2022
7S02	Crystal structure of FBF-2 in complex with LST-1 site A peptide and FBE RNA 分子名称: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, FBE RNA, ... 著者 Qiu, C, Hall, T.M.T. 登録日 2021-08-28 公開日 2021-12-29 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.34 Å) 主引用文献 Bipartite interaction sites differentially modulate RNA-binding affinity of a protein complex essential for germline stem cell self-renewal. Nucleic Acids Res., 50, 2022
5BZU	Crystal structure of the RNA-binding domain of yeast Puf5p bound to AAT2 RNA 分子名称: Suppressor protein MPT5, UGUAAUA 著者 Qiu, C, Hall, T.M.T. 登録日 2015-06-11 公開日 2015-09-23 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.501 Å) 主引用文献 RNA regulatory networks diversified through curvature of the PUF protein scaffold. Nat Commun, 6, 2015

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