PDB: 63 件ウェブページステータス検索Chemie searchBIRD

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5D8D	Crystal structure of D-alanine-D-alanine ligase from Acinetobacter baumannii 分子名称: D-alanine--D-alanine ligase 著者 Huynh, K.H, Hong, M.K, Kang, L.W. 登録日 2015-08-17 公開日 2016-08-17 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.19 Å) 主引用文献 The crystal structure of the D-alanine-D-alanine ligase from Acinetobacter baumannii suggests a flexible conformational change in the central domain before nucleotide binding J. Microbiol., 53, 2015
2I80	Allosteric inhibition of Staphylococcus aureus D-alanine:D-alanine ligase revealed by crystallographic studies 分子名称: 3-CHLORO-2,2-DIMETHYL-N-[4-(TRIFLUOROMETHYL)PHENYL]PROPANAMIDE, D-alanine-D-alanine ligase 著者 Liu, S, Chang, J.S, Herberg, J.T, Horng, M.-M, Tomich, P.K, Lin, A.H, Marotti, K.R. 登録日 2006-08-31 公開日 2006-09-26 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.19 Å) 主引用文献 Allosteric inhibition of Staphylococcus aureus D-alanine:D-alanine ligase revealed by crystallographic studies. Proc.Natl.Acad.Sci.Usa, 103, 2006
6U1C	Apo form of Thermus thermophilus D-alanine-D-alanine ligase 分子名称: D-alanine--D-alanine ligase 著者 Pederick, J.L, Bruning, J.B. 登録日 2019-08-15 公開日 2020-05-06 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 d-Alanine-d-alanine ligase as a model for the activation of ATP-grasp enzymes by monovalent cations. J.Biol.Chem., 295, 2020
6U1J	Thermus thermophilus D-alanine-D-alanine ligase in complex with ADP, phosphate, D-ala-D-ala, Mg2+ and K+ 分子名称: ADENOSINE-5'-DIPHOSPHATE, D-ALANINE, D-alanine--D-alanine ligase, ... 著者 Pederick, J.L, Bruning, J.B, Thompson, A.P. 登録日 2019-08-15 公開日 2020-05-06 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 d-Alanine-d-alanine ligase as a model for the activation of ATP-grasp enzymes by monovalent cations. J.Biol.Chem., 295, 2020
4EGQ	Crystal structure of D-alanine-D-alanine ligase B from Burkholderia pseudomallei 分子名称: D-alanine--D-alanine ligase 著者 Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2012-03-31 公開日 2012-04-11 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of D-alanine-D-alanine ligase B from Burkholderia pseudomallei To be Published
3I12	The crystal structure of the D-alanyl-alanine synthetase A from Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 分子名称: ADENOSINE-5'-DIPHOSPHATE, D-alanine-D-alanine ligase A 著者 Zhang, R, Maltseva, N, Papazisi, L, Anderson, W, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) 登録日 2009-06-25 公開日 2009-08-18 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The crystal structure of the D-alanyl-alanine synthetase A from Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 To be Published
6U1H	Thermus thermophilus D-alanine-D-alanine ligase in complex with ADP, phosphate, Mg2+ and K+ 分子名称: ADENOSINE-5'-DIPHOSPHATE, D-alanine--D-alanine ligase, MAGNESIUM ION, ... 著者 Pederick, J.L, Bruning, J.B. 登録日 2019-08-15 公開日 2020-05-06 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 d-Alanine-d-alanine ligase as a model for the activation of ATP-grasp enzymes by monovalent cations. J.Biol.Chem., 295, 2020
2ZDG	Crystal structure of D-Alanine:D-Alanine Ligase with ADP from Thermus thermophius HB8 分子名称: ADENOSINE-5'-DIPHOSPHATE, D-alanine--D-alanine ligase, MAGNESIUM ION 著者 Kitamura, Y, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-11-22 公開日 2008-05-27 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structure of D-Alanine:D-Alanine Ligase with ADP from Thermus thermophius HB8 To be Published
1IOV	COMPLEX OF D-ALA:D-ALA LIGASE WITH ADP AND A PHOSPHORYL PHOSPHONATE 分子名称: 2-[(1-AMINO-ETHYL)-PHOSPHATE-PHOSPHINOYLOXY]-BUTYRIC ACID, ADENOSINE-5'-DIPHOSPHATE, D-ALA:D-ALA LIGASE, ... 著者 Knox, J.R, Moews, P.C, Fan, C. 登録日 1996-09-20 公開日 1997-02-12 最終更新日 2024-05-22 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 D-alanine:D-alanine ligase: phosphonate and phosphinate intermediates with wild type and the Y216F mutant. Biochemistry, 36, 1997
3Q1K	The Crystal Structure of the D-alanyl-alanine Synthetase A from Salmonella enterica Typhimurium Complexed with ADP 分子名称: ADENOSINE-5'-DIPHOSPHATE, D-alanine--D-alanine ligase A, FORMIC ACID, ... 著者 Zhang, R, Maltseva, N, Papazisi, L, Anderson, W, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) 登録日 2010-12-17 公開日 2011-01-12 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (2.202 Å) 主引用文献 The Crystal Structure of the D-alanyl-alanine Synthetase A from Salmonella enterica Typhimurium Complexed with ADP To be Published
2YZM	Structure of D-Alanine:D-Alanine Ligase with substrate from Thermus thermophilus HB8 分子名称: D-ALANINE, D-alanine--D-alanine ligase 著者 Kitamura, Y, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-05-06 公開日 2007-11-06 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2.21 Å) 主引用文献 Structure of D-Alanine:D-Alanine Ligase with substrate from Thermus thermophilus HB8 To be Published
3K3P	Crystal Structure of the Apo Form of D-Alanine:D-Alanine Ligase (DDl) from Streptococcus mutans 分子名称: D-alanine--D-alanine ligase 著者 Lu, Y. 登録日 2009-10-03 公開日 2010-09-15 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.23 Å) 主引用文献 Crystal structure of the Apo form of D-Alanine:D-Alanine ligase (DDl) from Streptococcus mutans. Protein Pept.Lett., 17, 2010
5BPF	Crystal structure of ADP complexed D-alanine-D-alanine ligase(DDL) from Yersinia pestis 分子名称: ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, D-alanine-D-alanine ligase, ... 著者 Tran, H.T, Kang, L.W, Hong, M.K. 登録日 2015-05-28 公開日 2016-03-02 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.28 Å) 主引用文献 Structure of D-alanine-D-alanine ligase from Yersinia pestis: nucleotide phosphate recognition by the serine loop. Acta Crystallogr D Struct Biol, 72, 2016
2YZG	Crystal structure of D-ALA:D-ALA Ligase from Thermus thermophilus HB8 分子名称: D-alanine--D-alanine ligase 著者 Kitamura, Y, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-05-05 公開日 2007-11-06 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of D-ALA:D-ALA Ligase from Thermus thermophilus HB8 To be Published
6U1F	Thermus thermophilus D-alanine-D-alanine ligase in complex with ATP, D-alanine-D-alanine, Mg2+ and Cs+ 分子名称: ADENOSINE-5'-TRIPHOSPHATE, CESIUM ION, D-ALANINE, ... 著者 Pederick, J.L, Bruning, J.B. 登録日 2019-08-15 公開日 2020-05-06 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 d-Alanine-d-alanine ligase as a model for the activation of ATP-grasp enzymes by monovalent cations. J.Biol.Chem., 295, 2020
6U1I	Thermus thermophilus D-alanine-D-alanine ligase in complex with ADP, phosphorylated D-cycloserine, Mg2+ and K+ 分子名称: ADENOSINE-5'-DIPHOSPHATE, D-alanine--D-alanine ligase, MAGNESIUM ION, ... 著者 Pederick, J.L, Bruning, J.B, Thompson, A.P. 登録日 2019-08-15 公開日 2020-05-06 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 d-Alanine-d-alanine ligase as a model for the activation of ATP-grasp enzymes by monovalent cations. J.Biol.Chem., 295, 2020
4ZQI	Crystal structure of Apo D-alanine-D-alanine ligase(DDL) from Yersinia pestis 分子名称: D-alanine--D-alanine ligase, SODIUM ION 著者 Tran, H.-T, Kang, L.-W, Hong, M.-K, Ngo, H.P.T, Huynh, K.H, Ahn, Y.J. 登録日 2015-05-10 公開日 2016-01-13 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structure of D-alanine-D-alanine ligase from Yersinia pestis: nucleotide phosphate recognition by the serine loop. Acta Crystallogr D Struct Biol, 72, 2016
6DGI	The crystal structure of D-alanyl-alanine synthetase A from Vibrio cholerae O1 biovar eltor str. N16961 分子名称: ACETATE ION, D-alanine--D-alanine ligase, GLYCEROL, ... 著者 Tan, K, Zhou, M, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) 登録日 2018-05-17 公開日 2018-05-30 最終更新日 2019-12-18 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 The crystal structure of D-alanyl-alanine synthetase A from Vibrio cholerae O1 biovar eltor str. N16961 To Be Published
4EGJ	Crystal structure of D-alanine-D-alanine ligase from Burkholderia xenovorans 分子名称: D-alanine--D-alanine ligase 著者 SSGCID, Seattle Structural Genomics Center for Infectious Disease (SSGCID) 登録日 2012-03-31 公開日 2012-07-18 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Combining functional and structural genomics to sample the essential Burkholderia structome. Plos One, 8, 2013
2ZDQ	Crystal structure of D-Alanine:D-Alanine Ligase with ATP and D-Alanine:D-Alanine from Thermus thermophius HB8 分子名称: ADENOSINE-5'-TRIPHOSPHATE, D-ALANINE, D-alanine--D-alanine ligase 著者 Kitamuta, Y, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2007-11-27 公開日 2008-05-27 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structure of D-Alanine:D-Alanine Ligase with ATP and D-Alanine:D-Alanine from Thermus thermophius HB8 To be Published
4L1K	Crystal structure of D-alanine-D-alnine ligase from Xanthomonas oryzae pv. oryzae with AMPPNP 分子名称: D-alanine--D-alanine ligase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER 著者 Doan, T.T.N, Kim, J.K, Kang, L.W. 登録日 2013-06-03 公開日 2014-02-19 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structures of d-alanine-d-alanine ligase from Xanthomonas oryzae pv. oryzae alone and in complex with nucleotides Arch.Biochem.Biophys., 545C, 2014
3N8D	Crystal structure of Staphylococcus aureus VRSA-9 D-Ala:D-Ala ligase 分子名称: CHLORIDE ION, D-alanine--D-alanine ligase, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... 著者 Saul, F.A, Haouz, A, Meziane-Cherif, D. 登録日 2010-05-28 公開日 2010-10-13 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Molecular basis of vancomycin dependence in VanA-type Staphylococcus aureus VRSA-9. J.Bacteriol., 192, 2010
2DLN	VANCOMYCIN RESISTANCE: STRUCTURE OF D-ALANINE:D-ALANINE LIGASE AT 2.3 ANGSTROMS RESOLUTION 分子名称: 1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID, ADENOSINE-5'-DIPHOSPHATE, D-ALANINE--D-ALANINE LIGASE, ... 著者 Knox, J.R, Moews, P.C, Fan, C. 登録日 1994-07-18 公開日 1995-11-01 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Vancomycin resistance: structure of D-alanine:D-alanine ligase at 2.3 A resolution. Science, 266, 1994
8EVY	DdlB from Pseudomonas aeruginosa PAO1 in complex with ATP and D-ala-D-ala 分子名称: ADENOSINE-5'-TRIPHOSPHATE, D-ALANINE, D-alanine--D-alanine ligase B, ... 著者 Pederick, J.L, Woolman, J.C, Bruning, J.B. 登録日 2022-10-21 公開日 2023-08-30 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Comparative functional and structural analysis of Pseudomonas aeruginosa d-alanine-d-alanine ligase isoforms as prospective antibiotic targets. Febs J., 290, 2023
4FU0	Crystal Structure of VanG D-Ala:D-Ser Ligase from Enterococcus faecalis 分子名称: ADENOSINE-5'-DIPHOSPHATE, D-alanine--D-alanine ligase 7, SULFATE ION 著者 Meziane-Cherif, D, Saul, F.A, Haouz, A, Courvalin, P. 登録日 2012-06-28 公開日 2012-09-19 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Structural and functional characterization of VanG D-Ala:D-Ser ligase associated with vancomycin resistance in Enterococcus faecalis J.Biol.Chem., 287, 2012

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