PDB: 362 件ウェブページステータス検索Chemie searchBIRD

---

7ZY3	Room temperature structure of Archaerhodopsin-3 obtained 110 ns after photoexcitation 分子名称: Archaerhodopsin-3, CALCIUM ION, CHLORIDE ION, ... 著者 Kwan, T.O.C, Judge, P.J, Moraes, I, Watts, A, Axford, D, Bada Juarez, J.F. 登録日 2022-05-23 公開日 2023-06-14 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 A versatile approach to high-density microcrystals in lipidic cubic phase for room-temperature serial crystallography. J.Appl.Crystallogr., 56, 2023
8ANQ	Crystal structure of the microbial rhodopsin from Sphingomonas paucimobilis (SpaR) 分子名称: Bacteriorhodopsin, EICOSANE 著者 Kovalev, K, Okhrimenko, I, Marin, E, Gordeliy, V. 登録日 2022-08-05 公開日 2023-05-03 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Mirror proteorhodopsins. Commun Chem, 6, 2023
6GYH	Crystal structure of the light-driven proton pump Coccomyxa subellipsoidea Rhodopsin CsR 分子名称: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CHOLESTEROL, Family A G protein-coupled receptor-like protein, ... 著者 Szczepek, M, Schmidt, A, Scheerer, P. 登録日 2018-06-29 公開日 2019-03-27 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Design of a light-gated proton channel based on the crystal structure ofCoccomyxarhodopsin. Sci.Signal., 12, 2019
5UK6	Structure of Anabaena Sensory Rhodopsin Determined by Solid State NMR Spectroscopy and DEER 分子名称: Bacteriorhodopsin 著者 Milikisiyants, S, Wang, S, Munro, R.A, Donohue, M, Ward, M.E, Brown, L.S, Smirnova, T.I, Ladizhansky, V, Smirnov, A.I. 登録日 2017-01-20 公開日 2017-05-31 最終更新日 2020-01-08 実験手法 SOLID-STATE NMR 主引用文献 Oligomeric Structure of Anabaena Sensory Rhodopsin in a Lipid Bilayer Environment by Combining Solid-State NMR and Long-range DEER Constraints. J. Mol. Biol., 429, 2017
4TL3	Mechanistic insights from the crystal structure of an inward proton-transporting Anabaena sensory rhodopsin mutant 分子名称: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Anabaena sensory rhodopsin, RETINAL 著者 Dong, B.H, Luecke, H. 登録日 2014-05-29 公開日 2014-07-16 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Mechanistic insights from the crystal structure of an inward proton-transportingAnabaena sensory rhodopsin mutant To Be Published
4FPD	Deprotonation of D96 in bacteriorhodopsin opens the proton uptake pathway 分子名称: 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL, Bacteriorhodopsin, CHLORIDE ION, ... 著者 Wang, T, Sessions, A.O, Lunde, C.S, Rouani, S, Glaeser, R.M, Facciotti, M.T, Duan, Y. 登録日 2012-06-22 公開日 2013-02-27 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Deprotonation of d96 in bacteriorhodopsin opens the proton uptake pathway. Structure, 21, 2013
4FBZ	Crystal structure of deltarhodopsin from Haloterrigena thermotolerans 分子名称: (6E,10E,14E,18E)-2,6,10,15,19,23-hexamethyltetracosa-2,6,10,14,18,22-hexaene, 2,3-DI-PHYTANYL-GLYCEROL, BACTERIORUBERIN, ... 著者 Kouyama, T. 登録日 2012-05-23 公開日 2013-05-15 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Crystal structure of deltarhodopsin-3 from Haloterrigena thermotolerans Proteins, 81, 2013
6JO0	Crystal structure of the DTS-motif rhodopsin from Phaeocystis globosa virus 12T 分子名称: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, DECANE, DODECANE, ... 著者 Hosaka, T, Kimura-Someya, T, Shirouzu, M. 登録日 2019-03-19 公開日 2019-10-02 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.651 Å) 主引用文献 A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators. Proc.Natl.Acad.Sci.USA, 116, 2019
5VN9	Structure of bacteriorhodopsin from crystals grown at 4 deg C using GlyNCOC15+4 as an LCP host lipid 分子名称: Bacteriorhodopsin 著者 Ishchenko, A, Peng, L, Zinovev, E, Vlasov, A, Lee, S.C, Kuklin, A, Mishin, A, Borshchevskiy, V, Zhang, Q, Cherezov, V. 登録日 2017-04-28 公開日 2017-07-12 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.594 Å) 主引用文献 Chemically Stable Lipids for Membrane Protein Crystallization. Cryst Growth Des, 17, 2017
5VN7	Structure of bacteriorhodopsin from crystals grown at 20 deg Celcius using GlyNCOC15+4 as an LCP host lipid 分子名称: Bacteriorhodopsin 著者 Ishchenko, A, Peng, L, Zinovev, E, Vlasov, A, Lee, S.C, Kuklin, A, Mishin, A, Borshchevskiy, V, Zhang, Q, Cherezov, V. 登録日 2017-04-28 公開日 2017-07-12 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Chemically Stable Lipids for Membrane Protein Crystallization. Cryst Growth Des, 17, 2017
4PXK	Crystal structure of Haloarcula marismortui bacteriorhodopsin I D94N mutant 分子名称: Bacteriorhodopsin, EICOSANE, RETINAL, ... 著者 Shevchenko, V, Gushchin, I, Polovinkin, V, Gordeliy, V. 登録日 2014-03-24 公開日 2014-12-17 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal Structure of Escherichia coli-Expressed Haloarcula marismortui Bacteriorhodopsin I in the Trimeric Form. Plos One, 9, 2014
6TK4	Femtosecond to millisecond structural changes in a light-driven sodium pump: 1ns+16ns structure of KR2 with extrapolated, light and dark datasets 分子名称: EICOSANE, RETINAL, Sodium pumping rhodopsin 著者 Skopintsev, P, Ehrenberg, D, Weinert, T, James, D, Kar, R, Johnson, P, Ozerov, D, Furrer, A, Martiel, I, Dworkowski, F, Nass, K, Knopp, G, Cirelli, C, Gashi, D, Mous, S, Wranik, M, Gruhl, T, Kekilli, D, Bruenle, S, Deupi, X, Schertler, G.F.X, Benoit, R, Panneels, V, Nogly, P, Schapiro, I, Milne, C, Heberle, J, Standfuss, J. 登録日 2019-11-28 公開日 2020-05-27 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Femtosecond-to-millisecond structural changes in a light-driven sodium pump. Nature, 583, 2020
6TK6	Femtosecond to millisecond structural changes in a light-driven sodium pump: Dark structure in neutral conditions with attached light datasets at 800fs, 2ps, 100ps, 1ns, 16ns, 1us, 30us, 150us, 1ms and 20ms 分子名称: EICOSANE, RETINAL, Sodium pumping rhodopsin 著者 Skopintsev, P, Ehrenberg, D, Weinert, T, James, D, Kar, R, Johnson, P, Ozerov, D, Furrer, A, Martiel, I, Dworkowski, F, Nass, K, Knopp, G, Cirelli, C, Gashi, D, Mous, S, Wranik, M, Gruhl, T, Kekilli, D, Bruenle, S, Deupi, X, Schertler, G.F.X, Benoit, R, Panneels, V, Nogly, P, Schapiro, I, Milne, C, Heberle, J, Standfuss, J. 登録日 2019-11-28 公開日 2020-05-27 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Femtosecond-to-millisecond structural changes in a light-driven sodium pump. Nature, 583, 2020
6TK2	Femtosecond to millisecond structural changes in a light-driven sodium pump: 1ms structure of KR2 with extrapolated, light and dark datasets 分子名称: EICOSANE, RETINAL, SODIUM ION, ... 著者 Skopintsev, P, Ehrenberg, D, Weinert, T, James, D, Kar, R, Johnson, P, Ozerov, D, Furrer, A, Martiel, I, Dworkowski, F, Nass, K, Knopp, G, Cirelli, C, Gashi, D, Mous, S, Wranik, M, Gruhl, T, Kekilli, D, Bruenle, S, Deupi, X, Schertler, G.F.X, Benoit, R, Panneels, V, Nogly, P, Schapiro, I, Milne, C, Heberle, J, Standfuss, J. 登録日 2019-11-28 公開日 2020-05-27 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Femtosecond-to-millisecond structural changes in a light-driven sodium pump. Nature, 583, 2020
6TK7	Femtosecond to millisecond structural changes in a light-driven sodium pump: Dark structure in acidic conditions 分子名称: EICOSANE, RETINAL, Sodium pumping rhodopsin 著者 Skopintsev, P, Ehrenberg, D, Weinert, T, James, D, Kar, R, Johnson, P, Ozerov, D, Furrer, A, Martiel, I, Dworkowski, F, Nass, K, Knopp, G, Cirelli, C, Gashi, D, Mous, S, Wranik, M, Gruhl, T, Kekilli, D, Bruenle, S, Deupi, X, Schertler, G.F.X, Benoit, R, Panneels, V, Nogly, P, Schapiro, I, Milne, C, Heberle, J, Standfuss, J. 登録日 2019-11-28 公開日 2020-05-27 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Femtosecond-to-millisecond structural changes in a light-driven sodium pump. Nature, 583, 2020
3COC	Crystal Structure of D115A mutant of Bacteriorhodopsin 分子名称: Bacteriorhodopsin, RETINAL 著者 Joh, N.H, Faham, S, Bowie, J.U. 登録日 2008-03-27 公開日 2008-04-08 最終更新日 2021-10-20 実験手法 X-RAY DIFFRACTION (2.31 Å) 主引用文献 Modest stabilization by most hydrogen-bonded side-chain interactions in membrane proteins. Nature, 453, 2008
7Q35	Crystal structure of the mutant bacteriorhodopsin pressurized with krypton 分子名称: Bacteriorhodopsin, EICOSANE, HEXANE, ... 著者 Melnikov, I, Rulev, M, Astashkin, R, Kovalev, K, Carpentier, P, Gordeliy, V, Popov, A. 登録日 2021-10-27 公開日 2022-04-27 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 High-pressure crystallography shows noble gas intervention into protein-lipid interaction and suggests a model for anaesthetic action. Commun Biol, 5, 2022
7Q37	Crystal structure of proton pump MAR rhodopsin pressurized with krypton 分子名称: Bacteriorhodopsin, EICOSANE, HEXANE, ... 著者 Melnikov, I, Rulev, M, Astashkin, R, Kovalev, K, Carpentier, P, Gordeliy, V, Popov, A. 登録日 2021-10-27 公開日 2022-04-27 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 High-pressure crystallography shows noble gas intervention into protein-lipid interaction and suggests a model for anaesthetic action. Commun Biol, 5, 2022
7Q36	Crystal structure of KR2 sodium pump rhodopsin pressurized with krypton 分子名称: EICOSANE, HEXANE, KRYPTON, ... 著者 Melnikov, I, Rulev, M, Astashkin, R, Kovalev, K, Carpentier, P, Gordeliy, V, Popov, A. 登録日 2021-10-27 公開日 2022-04-27 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 High-pressure crystallography shows noble gas intervention into protein-lipid interaction and suggests a model for anaesthetic action. Commun Biol, 5, 2022
7Q38	Crystal structure of the mutant bacteriorhodopsin pressurized with argon 分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, ARGON, Bacteriorhodopsin, ... 著者 Melnikov, I, Rulev, M, Astashkin, R, Kovalev, K, Carpentier, P, Gordeliy, V, Popov, A. 登録日 2021-10-27 公開日 2022-04-27 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 High-pressure crystallography shows noble gas intervention into protein-lipid interaction and suggests a model for anaesthetic action. Commun Biol, 5, 2022
3COD	Crystal Structure of T90A/D115A mutant of Bacteriorhodopsin 分子名称: Bacteriorhodopsin, RETINAL 著者 Joh, N.H, Min, A, Faham, S, Bowie, J.U. 登録日 2008-03-27 公開日 2008-04-08 最終更新日 2021-10-20 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Modest stabilization by most hydrogen-bonded side-chain interactions in membrane proteins. Nature, 453, 2008
3DDL	Crystallographic Structure of Xanthorhodopsin, a Light-Driven Ion Pump with Dual Chromophore 分子名称: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, RETINAL, ... 著者 Stagno, J, Luecke, H, Schobert, B, Lanyi, J.K, Imasheva, E.S, Wang, J.M, Balashov, S.P. 登録日 2008-06-05 公開日 2008-10-14 最終更新日 2016-06-08 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystallographic structure of xanthorhodopsin, the light-driven proton pump with a dual chromophore. Proc.Natl.Acad.Sci.USA, 105, 2008
7VGU	Time-resolved serial femtosecond crystallography structure of light-driven chloride ion-pumping rhodopsin, NM-R3 : structure obtained 1 msec after photoexcitation with bromide ion 分子名称: BROMIDE ION, Chloride pumping rhodopsin, DECANE, ... 著者 Hosaka, T, Nango, E, Nakane, T, Luo, F, Kimura-Someya, T, Shirouzu, M. 登録日 2021-09-18 公開日 2022-02-16 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Conformational alterations in unidirectional ion transport of a light-driven chloride pump revealed using X-ray free electron lasers. Proc.Natl.Acad.Sci.USA, 119, 2022
7VGT	Time-resolved serial femtosecond crystallography structure of light-driven chloride ion-pumping rhodopsin, NM-R3: resting state structure with bromide ion 分子名称: BROMIDE ION, Chloride pumping rhodopsin, DECANE, ... 著者 Hosaka, T, Nango, E, Nakane, T, Luo, F, Kimura-Someya, T, Shirouzu, M. 登録日 2021-09-18 公開日 2022-02-16 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Conformational alterations in unidirectional ion transport of a light-driven chloride pump revealed using X-ray free electron lasers. Proc.Natl.Acad.Sci.USA, 119, 2022
7VSO	Serial Femtosecond Crystallography (SFX) of Ground State Bacteriorhodopsin Crystallized from Bicelles in Complex with HAD16 Determined Using 7-keV X-ray Free Electron Laser (XFEL) at SACLA 分子名称: 2-[[(2R)-2-(3-bromanyl-5-iodanyl-phenyl)carbonyloxy-3-tetradecanoyloxy-propoxy]-oxidanyl-phosphoryl]oxyethyl-trimethyl-azanium, 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, Bacteriorhodopsin, ... 著者 Mizohata, E, Nakane, T, Hanashima, S. 登録日 2021-10-27 公開日 2022-02-16 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.35 Å) 主引用文献 Heavy Atom Detergent/Lipid Combined X-ray Crystallography for Elucidating the Structure-Function Relationships of Membrane Proteins. Membranes (Basel), 11, 2021

<123456789101112131415>