Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8ZNL
DownloadVisualize
BU of 8znl by Molmil
PD-L1 de novo designed binder with picomolar binding affinity
分子名称: BROMIDE ION, PD-L1 de novo binder, Programmed cell death 1 ligand 1
著者Zhao, L.
登録日2024-05-27
公開日2025-06-04
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献PD-L1 de novo binder
To Be Published
2I34
DownloadVisualize
BU of 2i34 by Molmil
The crystal structure of Class C acid phosphatase from Bacillus anthracis with tungstate bound
分子名称: MAGNESIUM ION, TUNGSTATE(VI)ION, acid phosphatase
著者Felts, R.L, Tanner, J.J.
登録日2006-08-17
公開日2007-07-31
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The crystal structure of the class C acid phosphatase from Bacillus anthracis
To be Published
8ZLQ
DownloadVisualize
BU of 8zlq by Molmil
Proenzyme of Triticum aestivum papain-like cysteine protease Triticain-alpha inactive mutant lacking granulin domain
分子名称: Triticain alpha
著者Petushkova, A.I, Zalevsky, A.O, Gorokhovets, N.V, Makarov, V.A, Maslova, V.D, Fedorov, V.A, Savvateeva, L.V, Zernii, E.Y, Soond, S.M, Golovin, A.V, Zamyatnin Jr, A.A.
登録日2024-05-21
公開日2025-04-30
実験手法X-RAY DIFFRACTION (3.46 Å)
主引用文献The Structure of Triticain-Alpha Revealed a pH-Dependent Mechanism of Substrate Recognition
To Be Published
5JJE
DownloadVisualize
BU of 5jje by Molmil
Structure of the SRII/HtrII Complex in I212121 space group ("U" shape)
分子名称: EICOSANE, RETINAL, Sensory rhodopsin II transducer, ...
著者Ishchenko, A, Round, E, Borshchevskiy, V, Grudinin, S, Gushchin, I, Klare, J, Remeeva, A, Polovinkin, V, Utrobin, P, Balandin, T, Engelhard, M, Bueldt, G, Gordeliy, V.
登録日2016-04-23
公開日2017-02-15
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献New Insights on Signal Propagation by Sensory Rhodopsin II/Transducer Complex.
Sci Rep, 7, 2017
5JJL
DownloadVisualize
BU of 5jjl by Molmil
Rho transcription termination factor bound to rU8 and 5 ADP-BeF3 molecules
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ...
著者Thomsen, N.D, Lawson, M.R, Witkowsky, L.B, Qu, S, Berger, J.M.
登録日2016-04-24
公開日2016-11-16
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Molecular mechanisms of substrate-controlled ring dynamics and substepping in a nucleic acid-dependent hexameric motor.
Proc. Natl. Acad. Sci. U.S.A., 113, 2016
8ZRV
DownloadVisualize
BU of 8zrv by Molmil
Structure of human ECHS1 in complex with Hexanoyl-CoA
分子名称: Enoyl-CoA hydratase, mitochondrial, HEXANOYL-COENZYME A, ...
著者Su, G, Xu, Y, Chen, B, Ju, K, Sun, X, Jin, Y, Liu, D, Chen, H, Zhang, S, Luan, X.
登録日2024-06-05
公開日2025-04-30
実験手法ELECTRON MICROSCOPY (2.55 Å)
主引用文献Structural and biochemical mechanism of short-chain enoyl-CoA hydratase (ECHS1) substrate recognition.
Commun Biol, 8, 2025
8ZKE
DownloadVisualize
BU of 8zke by Molmil
Cryo-EM structure of inward-facing Anhydromuropeptide permease (AmpG) in complex with GlcNAc-1,6-anhMurNAc
分子名称: (2R)-2-[[(1R,2S,3R,4R,5R)-4-acetamido-2-[(2S,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-6,8-dioxabicyclo[3.2.1]octan-3-yl]oxy]propanoic acid, Muropeptide transporter
著者Chang, N, Kim, U, Yoo, Y, Kim, H, Cho, H.
登録日2024-05-16
公開日2025-05-21
最終更新日2025-06-11
実験手法ELECTRON MICROSCOPY (3.72 Å)
主引用文献Cryo-EM structure of inward-facing Anhydromuropeptide permease (AmpG) in complex with GlcNAc-1,6-anhMurNAc
To Be Published
5JKK
DownloadVisualize
BU of 5jkk by Molmil
Crystal structure of the negatively supercharged variant Ftn(neg) of human heavy chain ferritin
分子名称: CHLORIDE ION, FE (III) ION, Ferritin heavy chain, ...
著者Kuenzle, M, Beck, T.
登録日2016-04-26
公開日2017-05-10
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Metal-Assisted Assembly of Protein Containers Loaded with Inorganic Nanoparticles.
Inorg.Chem., 57, 2018
2I3F
DownloadVisualize
BU of 2i3f by Molmil
Crystal Structure of a Glycolipid transfer-like protein from Galdieria sulphuraria
分子名称: glycolipid transfer-like protein
著者McCoy, J.G, Wesenberg, G.E, Phillips Jr, G.N, Bitto, E, Bingman, C.A, Center for Eukaryotic Structural Genomics (CESG)
登録日2006-08-18
公開日2006-08-29
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.38 Å)
主引用文献Crystal Structure of a Glycolipid transfer-like protein from Galdieria sulphuraria
To be Published
6TDF
DownloadVisualize
BU of 6tdf by Molmil
Crystal structure of Aspergillus fumigatus Glucosamine-6-phosphate N-acetyltransferase 1 in complex with compound 3
分子名称: 2-[[3,5-bis(chloranyl)-4-(4~{H}-1,2,4-triazol-3-yl)phenyl]-(2-hydroxyethyl)amino]ethanol, 6-O-phosphono-alpha-D-glucopyranose, ACETYL COENZYME *A, ...
著者Raimi, O.G, Stanley, M, Lockhart, D.
登録日2019-11-08
公開日2020-04-29
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Targeting a critical step in fungal hexosamine biosynthesis.
J.Biol.Chem., 295, 2020
2I3Q
DownloadVisualize
BU of 2i3q by Molmil
Q44V mutant of Homing Endonuclease I-CreI
分子名称: 5'-D(*CP*GP*AP*AP*AP*CP*TP*GP*AP*CP*TP*CP*AP*CP*GP*TP*CP*GP*TP*TP*TP*TP*GP*C)-3', 5'-D(*GP*CP*AP*AP*AP*AP*CP*GP*AP*CP*GP*TP*GP*AP*GP*TP*CP*AP*GP*TP*TP*TP*CP*G)-3', CALCIUM ION, ...
著者Rosen, L, Sussman, D.
登録日2006-08-20
公開日2006-09-05
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Homing endonuclease I-CreI derivatives with novel DNA target specificities.
Nucleic Acids Res., 34, 2006
8ZKQ
DownloadVisualize
BU of 8zkq by Molmil
Cryo-EM structure of the efflux transporter MmpL5/MmpS5 from Mycobacterium tuberculosis, C1 symmetry
分子名称: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, CARDIOLIPIN, Meromycolate extension acyl carrier protein, ...
著者Zhang, B, Xiong, Z, Rao, Z.
登録日2024-05-17
公開日2025-05-21
最終更新日2025-05-28
実験手法ELECTRON MICROSCOPY (2.84 Å)
主引用文献Membrane transporter
To Be Published
2I3Z
DownloadVisualize
BU of 2i3z by Molmil
rat DPP-IV with xanthine mimetic inhibitor #7
分子名称: 2-[(3S)-3-AMINOPIPERIDIN-1-YL]-1-(2-CYANOBENZYL)-5-METHYL-4,6-DIOXO-3,4,5,6-TETRAHYDROPYRROLO[3,4-D]IMIDAZOL-1-IUM, Dipeptidyl peptidase 4 (Dipeptidyl peptidase IV) (DPP IV)
著者Kurukulasuriya, R, Rohde, J.J, Szczepankiewicz, B.G, Basha, F, Lai, C, Winn, M, Stewart, K.D, Longenecker, K.L, Lubben, T.W, Ballaron, S.J, Sham, H.L, VonGeldern, T.W.
登録日2006-08-21
公開日2006-12-12
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Xanthine mimetics as potent dipeptidyl peptidase IV inhibitors.
Bioorg.Med.Chem.Lett., 16, 2006
8ZPR
DownloadVisualize
BU of 8zpr by Molmil
EcGK filament complexed with proline.
分子名称: Glutamate 5-kinase, PROLINE
著者Zhang, T, Leng, Q, Liu, L.J.
登録日2024-05-31
公開日2025-06-04
実験手法ELECTRON MICROSCOPY (2.76 Å)
主引用文献EcGPR tetramer with catalytic intermediates
To Be Published
2I2Z
DownloadVisualize
BU of 2i2z by Molmil
Human serum albumin complexed with myristate and aspirin
分子名称: 2-HYDROXYBENZOIC ACID, MYRISTIC ACID, Serum albumin
著者Yang, F, Bian, C, Zhu, L, Zhao, G, Huang, Z, Huang, M.
登録日2006-08-17
公開日2006-12-12
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Effect of human serum albumin on drug metabolism: Structural evidence of esterase activity of human serum albumin
J.Struct.Biol., 157, 2007
8ZXX
DownloadVisualize
BU of 8zxx by Molmil
PfDXR - Mn2+ - NADPH - TAKK442 quaternary complex
分子名称: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic, GLYCEROL, ...
著者Tanaka, N, Takada, S, Sakamoto, Y.
登録日2024-06-15
公開日2025-05-21
実験手法X-RAY DIFFRACTION (1.23 Å)
主引用文献Expanding the Chemical Space of Reverse Fosmidomycin Analogs.
Acs Med.Chem.Lett., 16, 2025
9AYE
DownloadVisualize
BU of 9aye by Molmil
FIS1 T34D Covalent inhibitor complex
分子名称: 2-chloro-N-methyl-N-[3-(10H-phenothiazin-10-yl)propyl]acetamide, Mitochondrial fission 1 protein
著者Mathews, I.I, Pokhrel, S, Wakatsuki, S.
登録日2024-03-07
公開日2025-05-21
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A hidden cysteine in Fis1 targeted to prevent excessive mitochondrial fission and dysfunction under oxidative stress.
Nat Commun, 16, 2025
2I3U
DownloadVisualize
BU of 2i3u by Molmil
Structural studies of protein tyrosine phosphatase beta catalytic domain in complex with inhibitors
分子名称: Receptor-type tyrosine-protein phosphatase beta
著者Evdokimov, A.G, Pokross, M.E, Walter, R.L, Mekel, M.
登録日2006-08-20
公開日2006-08-29
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Engineering the catalytic domain of human protein tyrosine phosphatase beta for structure-based drug discovery.
Acta Crystallogr.,Sect.D, 62, 2006
9AVE
DownloadVisualize
BU of 9ave by Molmil
Mitochondrial fission 1 protein Fis1 T34E mutation
分子名称: Mitochondrial fission 1 protein
著者Mathews, I.I, Pokhrel, S, Wakatsuki, S.
登録日2024-03-01
公開日2025-05-21
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献A hidden cysteine in Fis1 targeted to prevent excessive mitochondrial fission and dysfunction under oxidative stress.
Nat Commun, 16, 2025
5JNR
DownloadVisualize
BU of 5jnr by Molmil
Crystal structure of human low molecular weight protein tyrosine phosphatase (LMPTP) type A
分子名称: Low molecular weight phosphotyrosine protein phosphatase
著者Stanford, S.M, Aleshin, A.E, Liddington, R.C, Bankston, L, Cadwell, G, Bottini, N.
登録日2016-04-30
公開日2017-03-29
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Diabetes reversal by inhibition of the low-molecular-weight tyrosine phosphatase.
Nat. Chem. Biol., 13, 2017
2I4J
DownloadVisualize
BU of 2i4j by Molmil
Crystal structure of the complex between PPARgamma and the agonist LT160 (ureidofibrate derivative)
分子名称: (2R)-2-(4-{2-[1,3-BENZOXAZOL-2-YL(HEPTYL)AMINO]ETHYL}PHENOXY)-2-METHYLBUTANOIC ACID, Peroxisome proliferator-activated receptor gamma
著者Pochetti, G, Mazza, F.
登録日2006-08-22
公開日2007-04-17
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Insights into the mechanism of partial agonism: crystal structures of the peroxisome proliferator-activated receptor gamma ligand-binding domain in the complex with two enantiomeric ligands
J.Biol.Chem., 282, 2007
2I52
DownloadVisualize
BU of 2i52 by Molmil
Crystal structure of protein PTO0218 from Picrophilus torridus, Pfam DUF372
分子名称: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
著者Ramagopal, U.A, Gilmore, J, Toro, R, Bain, K.T, McKenzie, C, Reyes, C, Sauder, J.M, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC)
登録日2006-08-23
公開日2006-09-12
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Structure of hypothetical protein PTO0218 from Picrophilus torridus
To be Published
5JNY
DownloadVisualize
BU of 5jny by Molmil
Crystal Structure of 10E8 Fab
分子名称: 10E8 Heavy Chain, 10E8 Light Chain, CHLORIDE ION, ...
著者Ofek, G, Kwong, P.
登録日2016-05-01
公開日2016-07-13
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (3.041 Å)
主引用文献Developmental Pathway of the MPER-Directed HIV-1-Neutralizing Antibody 10E8.
Plos One, 11, 2016
2I5M
DownloadVisualize
BU of 2i5m by Molmil
Crystal structure of Bacillus subtilis cold shock protein CspB variant A46K S48R
分子名称: Cold shock protein cspB, MAGNESIUM ION
著者Max, K.E.A, Heinemann, U.
登録日2006-08-25
公開日2007-05-22
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Optimized variants of the cold shock protein from in vitro selection: structural basis of their high thermostability.
J.Mol.Biol., 369, 2007
5JI2
DownloadVisualize
BU of 5ji2 by Molmil
HslU L199Q in HslUV complex
分子名称: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent protease ATPase subunit HslU, ATP-dependent protease subunit HslV, ...
著者Grant, R.A, Sauer, R.T, Schmitz, K.R, Baytshtok, V.
登録日2016-04-21
公開日2016-11-30
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.307 Å)
主引用文献A Structurally Dynamic Region of the HslU Intermediate Domain Controls Protein Degradation and ATP Hydrolysis.
Structure, 24, 2016

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon