Loading
PDBj
メニューPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6N2G
DownloadVisualize
BU of 6n2g by Molmil
Crystal structure of Caenorhabditis elegans NAP1
分子名称: Nucleosome Assembly Protein
著者Bhattacharyya, S, DArcy, S.
登録日2018-11-13
公開日2019-01-30
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.003 Å)
主引用文献Characterization of Caenorhabditis elegans Nucleosome Assembly Protein 1 Uncovers the Role of Acidic Tails in Histone Binding.
Biochemistry, 58, 2019
4MZ7
DownloadVisualize
BU of 4mz7 by Molmil
Structural insight into dGTP-dependent activation of tetrameric SAMHD1 deoxynucleoside triphosphate triphosphohydrolase
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, Deoxynucleoside triphosphate triphosphohydrolase SAMHD1, ...
著者Zhu, C, Gao, W, Zhao, K, Qin, X, Zhang, Y, Peng, X, Zhang, L, Dong, Y, Zhang, W, Li, P, Wei, W, Gong, Y, Yu, X.F.
登録日2013-09-29
公開日2013-11-20
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural insight into dGTP-dependent activation of tetrameric SAMHD1 deoxynucleoside triphosphate triphosphohydrolase
Nat Commun, 4, 2013
7UWQ
DownloadVisualize
BU of 7uwq by Molmil
Klebsiella pneumoniae adenosine monophosphate nucleosidase
分子名称: AMP nucleosidase
著者Richardson, B.C, French, J.B.
登録日2022-05-03
公開日2022-09-28
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.05 Å)
主引用文献Structure of Klebsiella pneumoniae adenosine monophosphate nucleosidase.
Plos One, 17, 2022
8C6J
DownloadVisualize
BU of 8c6j by Molmil
Human spliceosomal PM5 C* complex
分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent RNA helicase DHX8, ...
著者Dybkov, O, Kastner, B, Luehrmann, R.
登録日2023-01-12
公開日2023-07-12
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Regulation of 3' splice site selection after step 1 of splicing by spliceosomal C* proteins.
Sci Adv, 9, 2023
6ZYM
DownloadVisualize
BU of 6zym by Molmil
Human C Complex Spliceosome - High-resolution CORE
分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, Cell division cycle 5-like protein, Corepressor interacting with RBPJ 1, ...
著者Bertram, K, Kastner, B.
登録日2020-08-02
公開日2020-10-14
最終更新日2025-07-02
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural Insights into the Roles of Metazoan-Specific Splicing Factors in the Human Step 1 Spliceosome.
Mol.Cell, 80, 2020
6ZK1
DownloadVisualize
BU of 6zk1 by Molmil
Plant nucleoside hydrolase - ZmNRh2b enzyme
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ...
著者Morera, S, Vigouroux, A, Kopecny, D.
登録日2020-06-29
公開日2022-01-12
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Plant nucleoside N-ribohydrolases: riboside binding and role in nitrogen storage mobilization.
Plant J., 2023
6ZK2
DownloadVisualize
BU of 6zk2 by Molmil
Plant nucleoside hydrolase - ZmNRh2b in complex with forodesine
分子名称: 1,2-ETHANEDIOL, 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL, CALCIUM ION, ...
著者Morera, S, Vigouroux, A, Kopecny, D.
登録日2020-06-29
公開日2022-01-12
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Plant nucleoside N-ribohydrolases: riboside binding and role in nitrogen storage mobilization.
Plant J., 2023
6ZK3
DownloadVisualize
BU of 6zk3 by Molmil
Plant nucleoside hydrolase - ZmNRh2b in complex with ribose
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Morera, S, Vigouroux, A, Kopecny, D.
登録日2020-06-29
公開日2022-01-12
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Plant nucleoside N-ribohydrolases: riboside binding and role in nitrogen storage mobilization.
Plant J., 2023
6ZK4
DownloadVisualize
BU of 6zk4 by Molmil
Plant nucleoside hydrolase - ZmNRh2b with a bound adenine
分子名称: 1,2-ETHANEDIOL, ADENINE, CALCIUM ION, ...
著者Morera, S, Vigouroux, A, Kopecny, D.
登録日2020-06-29
公開日2022-01-12
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Plant nucleoside N-ribohydrolases: riboside binding and role in nitrogen storage mobilization.
Plant J., 2023
6ZK5
DownloadVisualize
BU of 6zk5 by Molmil
Plant nucleoside hydrolase - ZmNRh3 enzyme in complex with forodesine
分子名称: 1,2-ETHANEDIOL, 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL, CALCIUM ION, ...
著者Morera, S, Vigouroux, A, Kopecny, D.
登録日2020-06-29
公開日2022-01-12
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Plant nucleoside N-ribohydrolases: riboside binding and role in nitrogen storage mobilization.
Plant J., 2023
8D38
DownloadVisualize
BU of 8d38 by Molmil
Structure of a purine nucleoside phosphorylase from Geobacillus stearothermophilus
分子名称: Purine nucleoside phosphorylase, SODIUM ION
著者Given, F, Johnston, J, Crittenden, D, Moran, F, Johns, A.
登録日2022-05-31
公開日2022-12-14
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.72 Å)
主引用文献The structure of His-tagged Geobacillus stearothermophilus purine nucleoside phosphorylase reveals a 'spanner in the works'.
Acta Crystallogr.,Sect.F, 78, 2022
1GQV
DownloadVisualize
BU of 1gqv by Molmil
Atomic Resolution (0.98A) Structure of Eosinophil-Derived Neurotoxin
分子名称: ACETATE ION, EOSINOPHIL-DERIVED NEUROTOXIN
著者Swaminathan, G.J, Holloway, D.E, Veluraja, K, Acharya, K.R.
登録日2001-12-05
公開日2002-03-08
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (0.98 Å)
主引用文献Atomic Resolution (0.98 A) Structure of Eosinophil-Derived Neurotoxin
Biochemistry, 41, 2002
8C25
DownloadVisualize
BU of 8c25 by Molmil
purine nucleoside phosphorylase in complex with JS-375
分子名称: CHLORIDE ION, GLYCEROL, Purine nucleoside phosphorylase, ...
著者Djukic, S, Pachl, P, Rezacova, P.
登録日2022-12-21
公開日2023-05-31
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.56 Å)
主引用文献Design, Synthesis, Biological Evaluation, and Crystallographic Study of Novel Purine Nucleoside Phosphorylase Inhibitors.
J.Med.Chem., 66, 2023
1S57
DownloadVisualize
BU of 1s57 by Molmil
crystal structure of nucleoside diphosphate kinase 2 from Arabidopsis
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Nucleoside diphosphate kinase II, SULFATE ION
著者Im, Y.J, Kim, J.-I, Shen, Y, Na, Y, Han, Y.-J, Kim, S.-H, Song, P.-S, Eom, S.H.
登録日2004-01-20
公開日2004-11-30
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural analysis of Arabidopsis thaliana nucleoside diphosphate kinase-2 for phytochrome-mediated light signaling
J.Mol.Biol., 343, 2004
7TN2
DownloadVisualize
BU of 7tn2 by Molmil
Composite model of a Chd1-nucleosome complex in the nucleotide-free state derived from 2.3A and 2.7A Cryo-EM maps
分子名称: Chromo domain-containing protein 1, DNA Lagging Strand, DNA Tracking Strand, ...
著者Nodelman, I.M, Bowman, G.D, Armache, J.-P.
登録日2022-01-20
公開日2022-03-02
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (2.3 Å)
主引用文献Nucleosome recognition and DNA distortion by the Chd1 remodeler in a nucleotide-free state.
Nat.Struct.Mol.Biol., 29, 2022
1K2A
DownloadVisualize
BU of 1k2a by Molmil
Modified Form of Eosinophil-derived Neurotoxin
分子名称: SULFATE ION, eosinophil-derived neurotoxin
著者Chang, C, Newton, D.L, Rybak, S.M, Wlodawer, A.
登録日2001-09-26
公開日2002-04-03
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Crystallographic and functional studies of a modified form of eosinophil-derived neurotoxin (EDN) with novel biological activities.
J.Mol.Biol., 317, 2002
2B8P
DownloadVisualize
BU of 2b8p by Molmil
Crystal structure of Acanthamoeba polyphaga mimivirus NDK, the first viral nucleoside diphosphate kinase
分子名称: Probable nucleoside diphosphate kinase, SULFATE ION
著者Jeudy, S, Claverie, J.M, Abergel, C.
登録日2005-10-10
公開日2005-11-15
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
J.Virol., 83, 2009
1S59
DownloadVisualize
BU of 1s59 by Molmil
Structure of nucleoside diphosphate kinase 2 with bound dGTP from Arabidopsis
分子名称: 2'-DEOXYGUANOSINE-5'-DIPHOSPHATE, 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, Nucleoside diphosphate kinase II
著者Im, Y.J, Kim, J.-I, Shen, Y, Na, Y, Han, Y.-J, Kim, S.-H, Song, P.-S, Eom, S.H.
登録日2004-01-20
公開日2004-11-30
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural analysis of Arabidopsis thaliana nucleoside diphosphate kinase-2 for phytochrome-mediated light signaling
J.Mol.Biol., 343, 2004
2B8Q
DownloadVisualize
BU of 2b8q by Molmil
X-ray structure of Acanthamoeba ployphaga mimivirus nucleoside diphosphate kinase complexed with TDP
分子名称: MAGNESIUM ION, PHOSPHATE ION, Probable nucleoside diphosphate kinase, ...
著者Jeudy, S, Claverie, J.M, Abergel, C.
登録日2005-10-10
公開日2005-11-15
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
J.Virol., 83, 2009
7SWY
DownloadVisualize
BU of 7swy by Molmil
2.6 A structure of a 40-601[TA-rich+1]-40 nucleosome
分子名称: DNA Guide Strand, DNA Tracking Strand, Histone H2A, ...
著者Nodelman, I.M, Bowman, G.D, Armache, J.-P.
登録日2021-11-21
公開日2022-03-02
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (2.6 Å)
主引用文献Nucleosome recognition and DNA distortion by the Chd1 remodeler in a nucleotide-free state.
Nat.Struct.Mol.Biol., 29, 2022
6ID1
DownloadVisualize
BU of 6id1 by Molmil
Cryo-EM structure of a human intron lariat spliceosome after Prp43 loaded (ILS2 complex) at 2.9 angstrom resolution
分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, CWF19-like protein 2, Cell division cycle 5-like protein, ...
著者Zhang, X, Zhan, X, Yan, C, Shi, Y.
登録日2018-09-07
公開日2019-03-13
最終更新日2024-10-09
実験手法ELECTRON MICROSCOPY (2.86 Å)
主引用文献Structures of the human spliceosomes before and after release of the ligated exon.
Cell Res., 29, 2019
2BRS
DownloadVisualize
BU of 2brs by Molmil
EMBP Heparin complex
分子名称: 2-O-sulfo-beta-L-altropyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose, EOSINOPHIL-GRANULE MAJOR BASIC PROTEIN, SULFATE ION
著者Swaminathan, G.J, Myszka, D.G, Katsamba, P.S, Ohnuki, L.E, Gleich, G.J, Acharya, K.R.
登録日2005-05-11
公開日2005-10-26
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Eosinophil-Granule Major Basic Protein, a C-Type Lectin, Binds Heparin
Biochemistry, 44, 2005
2FJ7
DownloadVisualize
BU of 2fj7 by Molmil
Crystal structure of Nucleosome Core Particle Containing a Poly (dA.dT) Sequence Element
分子名称: 147 bp DNA containing 16 bp poly dA element, 147 bp DNA containing 16 bp poly dT element, Histone H2B, ...
著者Bao, Y, White, C.L, Luger, K.
登録日2005-12-31
公開日2006-09-26
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Nucleosome Core Particles Containing a Poly(dA.dT) Sequence Element Exhibit a Locally Distorted DNA Structure.
J.Mol.Biol., 361, 2006
7TY1
DownloadVisualize
BU of 7ty1 by Molmil
Crystal structure of apo eosinophil cationic protein (ribonuclease 3) from Macaca fascicularis (MfECP)
分子名称: CITRIC ACID, DI(HYDROXYETHYL)ETHER, Eosinophil cationic protein, ...
著者Tran, T.T.Q, Pham, N.T.H, Calmettes, C, Doucet, N.
登録日2022-02-11
公開日2023-08-16
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Ancestral sequence reconstruction dissects structural and functional differences among eosinophil ribonucleases.
J.Biol.Chem., 300, 2024
6ICZ
DownloadVisualize
BU of 6icz by Molmil
Cryo-EM structure of a human post-catalytic spliceosome (P complex) at 3.0 angstrom
分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent RNA helicase DHX8, ...
著者Zhang, X, Zhan, X, Yan, C, Shi, Y.
登録日2018-09-07
公開日2019-03-13
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structures of the human spliceosomes before and after release of the ligated exon.
Cell Res., 29, 2019

238582

件を2025-07-09に公開中

PDB statisticsPDBj update infoContact PDBjnumon