PDB: 2621 件ウェブページステータス検索Chemie searchBIRD

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7Y7G	Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T. 登録日 2022-06-22 公開日 2023-10-25 最終更新日 2023-12-27 実験手法 ELECTRON MICROSCOPY (2.34 Å) 主引用文献 Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth. Cell, 186, 2023
7Y7H	Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAC) 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T. 登録日 2022-06-22 公開日 2023-10-25 最終更新日 2023-12-27 実験手法 ELECTRON MICROSCOPY (2.51 Å) 主引用文献 Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth. Cell, 186, 2023
7OZ3	S. agalactiae BusR in complex with its busA-promotor DNA 分子名称: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, GntR family transcriptional regulator, pBusA_for, ... 著者 Bandera, A.M, Witte, G. 登録日 2021-06-25 公開日 2021-08-11 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (4.46 Å) 主引用文献 BusR senses bipartite DNA binding motifs by a unique molecular ruler architecture. Nucleic Acids Res., 49, 2021
7JT1	70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Korostelev, A.A. 登録日 2020-08-16 公開日 2020-11-11 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 ArfB can displace mRNA to rescue stalled ribosomes Nat Commun, 11, 2020
7JSS	ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Korostelev, A.A. 登録日 2020-08-15 公開日 2020-11-11 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 ArfB can displace mRNA to rescue stalled ribosomes. Nat Commun, 11, 2020
7JT3	Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Korostelev, A.A. 登録日 2020-08-17 公開日 2020-11-11 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 ArfB can displace mRNA to rescue stalled ribosomes Nat Commun, 11, 2020
7JSZ	ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Korostelev, A.A. 登録日 2020-08-16 公開日 2020-11-11 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 ArfB can displace mRNA to rescue stalled ribosomes. Nat Commun, 11, 2020
7JT2	70S ribosome stalled on long mRNA with ArfB bound in the A site 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Korostelev, A.A. 登録日 2020-08-16 公開日 2020-11-11 最終更新日 2024-11-06 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 ArfB can displace mRNA to rescue stalled ribosomes Nat Commun, 11, 2020
7JSW	ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-III) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Carbone, C.E, Korostelev, A.A. 登録日 2020-08-16 公開日 2020-11-11 最終更新日 2024-03-06 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 ArfB can displace mRNA to rescue stalled ribosomes. Nat Commun, 11, 2020
8CO2	YdaS N-terminal domain from prophage CP-933P in E. coli O157:H7 分子名称: ISOPROPYL ALCOHOL, Putative antirepressor protein Cro, SULFATE ION 著者 Prolic-Kalinsek, M, Loris, R. 登録日 2023-02-26 公開日 2023-03-08 最終更新日 2024-06-19 実験手法 X-RAY DIFFRACTION (1.63880718 Å) 主引用文献 YdaS from the Escherichia coli cryptic prophage CP-933P forms an evolutionary link between Cro repressors and HigA antitoxins To Be Published
8WGN	Human dihydrofolate reductase (HsDHFR) complexed with NADPH and LA1 分子名称: (3~{E})-3-[[2-[3-[2,4-bis(azanyl)-6-ethyl-pyrimidin-5-yl]oxypropoxy]phenyl]methylidene]oxolan-2-one, Dihydrofolate reductase, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... 著者 Vanichtanankul, J, Saeyang, T, Vitsupakorn, D, Decharuangsilp, S, Arwon, U, Yuthavong, Y, Kamchonwongpaisan, S. 登録日 2023-09-22 公開日 2024-09-11 最終更新日 2024-09-25 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Flexible 2,4-diaminopyrimidine bearing a butyrolactone as Plasmodium falciparum dihydrofolate reductase inhibitors. Bioorg.Chem., 153, 2024
1SD7	Crystal Structure of a SeMet derivative of MecI at 2.65 A 分子名称: Methicillin resistance regulatory protein mecI 著者 Safo, M.K, Zhao, Q, Musayev, F.N, Robinson, H, Scarsdale, N, Archer, G.L. 登録日 2004-02-13 公開日 2004-02-24 最終更新日 2024-10-16 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Crystal structures of the BlaI repressor from Staphylococcus aureus and its complex with DNA: insights into transcriptional regulation of the bla and mec operons J.Bacteriol., 187, 2005
3MQ0	Crystal Structure of Agobacterium tumefaciens repressor BlcR 分子名称: Transcriptional repressor of the blcABC operon 著者 Chen, L. 登録日 2010-04-27 公開日 2011-03-30 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.793 Å) 主引用文献 The Agrobacterium tumefaciens Transcription Factor BlcR Is Regulated via Oligomerization. J.Biol.Chem., 286, 2011
7RGU	The crystal structure of RocC bound to a transcriptional terminator 分子名称: Modified SL3 of RocR, Repressor of competence, RNA Chaperone 著者 Kim, H.J, Edwards, R.A, Glover, J.N.M. 登録日 2021-07-15 公開日 2022-11-09 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structural basis for recognition of transcriptional terminator structures by ProQ/FinO domain RNA chaperones. Nat Commun, 13, 2022
8BNY	Structure of the tetramerization domain of pLS20 conjugation repressor Rco 分子名称: CHLORIDE ION, Immunity repressor protein 著者 Bernardo, N, Crespo, I, Meijer, W.J.J, Boer, D.R. 登録日 2022-11-14 公開日 2023-04-19 最終更新日 2024-06-19 実験手法 X-RAY DIFFRACTION (1.429 Å) 主引用文献 A tetramerization domain in prokaryotic and eukaryotic transcription regulators homologous to p53. Acta Crystallogr D Struct Biol, 79, 2023
8JFF	Crystal structure of Catabolite repressor acivator from E. coli in complex with HEPES 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Catabolite repressor/activator 著者 Neetu, N, Katiki, M, Kumar, P. 登録日 2023-05-18 公開日 2024-04-24 実験手法 X-RAY DIFFRACTION (2.89 Å) 主引用文献 Sulisobenzone is a potent inhibitor of the global transcription factor Cra. J.Struct.Biol., 215, 2023
3JXB	Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C 分子名称: 5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*A)-3', 5'-D(*TP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3', Repressor protein C2 著者 Watkins, D, Koudelka, G.B, Williams, L.D. 登録日 2009-09-18 公開日 2010-01-19 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.67 Å) 主引用文献 Sequence Recognition of DNA by Protein-Induced Conformational Transitions J.Mol.Biol., 396, 2010
3JXD	Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9C in the presence of Rb+ 分子名称: 5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*CP*GP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3', RUBIDIUM ION, Repressor protein C2 著者 Watkins, D, Koudelka, G.B, Williams, L.D. 登録日 2009-09-18 公開日 2010-01-19 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Sequence Recognition of DNA by Protein-Induced Conformational Transitions. J.Mol.Biol., 396, 2010
3JXC	Crystal structure of the P22 c2 repressor protein in complex with synthetic operator 9T in the presence of Tl+ 分子名称: 5'-D(*CP*AP*TP*TP*TP*AP*AP*GP*AP*TP*AP*TP*CP*TP*TP*AP*AP*AP*TP*G)-3', Repressor protein C2, THALLIUM (I) ION 著者 Watkins, D, Koudelka, G.B, Williams, L.D. 登録日 2009-09-18 公開日 2010-01-19 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Sequence Recognition of DNA by Protein-Induced Conformational Transitions. J.Mol.Biol., 396, 2010
7EQF	Crystal Structure of a Transcription Factor in complex with Ligand 分子名称: (6~{R})-3-methyl-8-[(2~{S},4~{R},5~{S},6~{R})-6-methyl-5-[(2~{S},4~{R},5~{R},6~{R})-6-methyl-4-[(2~{S},5~{S},6~{S})-6-methyl-5-[(2~{S},4~{R},5~{S},6~{R})-6-methyl-5-[(2~{S},4~{S},5~{S},6~{R})-6-methyl-4-[(2~{S},5~{S},6~{S})-6-methyl-5-oxidanyl-oxan-2-yl]oxy-5-oxidanyl-oxan-2-yl]oxy-4-oxidanyl-oxan-2-yl]oxy-oxan-2-yl]oxy-5-oxidanyl-oxan-2-yl]oxy-4-oxidanyl-oxan-2-yl]oxy-1,6,11-tris(oxidanyl)-5,6-dihydrobenzo[a]anthracene-7,12-dione, TetR/AcrR family transcriptional regulator 著者 Uehara, S, Tsugita, A, Matsui, T, Yokoyama, T, Ostash, I, Ostash, B, Tanaka, Y. 登録日 2021-05-01 公開日 2022-04-27 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.91 Å) 主引用文献 The carbohydrate tail of landomycin A is responsible for its interaction with the repressor protein LanK. Febs J., 289, 2022
7CV2	Crystal structure of B. halodurans NiaR in niacin-bound form 分子名称: NICOTINIC ACID, Transcriptional regulator NiaR, ZINC ION 著者 Lee, J.Y, Lee, D.W, Park, Y.W, Lee, M.Y, Jeong, K.H. 登録日 2020-08-25 公開日 2020-12-16 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.802 Å) 主引用文献 Structural analysis and insight into effector binding of the niacin-responsive repressor NiaR from Bacillus halodurans. Sci Rep, 10, 2020
7CV0	Crystal structure of B. halodurans NiaR in apo form 分子名称: Transcriptional regulator NiaR, ZINC ION 著者 Lee, J.Y, Lee, D.W, Park, Y.W, Lee, M.Y, Jeong, K.H. 登録日 2020-08-25 公開日 2020-12-16 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.998 Å) 主引用文献 Structural analysis and insight into effector binding of the niacin-responsive repressor NiaR from Bacillus halodurans. Sci Rep, 10, 2020
7EN6	The crystal structure of Escherichia coli MurR in apo form 分子名称: HTH-type transcriptional regulator MurR, PHOSPHATE ION 著者 Zhang, Y, Chen, W, Ji, Q. 登録日 2021-04-16 公開日 2022-04-20 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.276 Å) 主引用文献 Molecular basis for cell-wall recycling regulation by transcriptional repressor MurR in Escherichia coli. Nucleic Acids Res., 50, 2022
7EN5	The crystal structure of Escherichia coli MurR in complex with N-acetylglucosamine-6-phosphate 分子名称: 2-METHOXYETHANOL, 2-acetamido-2-deoxy-6-O-phosphono-beta-D-glucopyranose, GLYCEROL, ... 著者 Zhang, Y, Chen, W, Ji, Q. 登録日 2021-04-16 公開日 2022-04-20 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.25 Å) 主引用文献 Molecular basis for cell-wall recycling regulation by transcriptional repressor MurR in Escherichia coli. Nucleic Acids Res., 50, 2022
7EN7	The crystal structure of Escherichia coli MurR in complex with N-acetylmuramic-acid-6-phosphate 分子名称: (2R)-2-[(2R,3R,4R,5S,6R)-3-acetamido-2,5-bis(oxidanyl)-6-(phosphonooxymethyl)oxan-4-yl]oxypropanoic acid, HTH-type transcriptional regulator MurR 著者 Zhang, Y, Chen, W, Ji, Q. 登録日 2021-04-16 公開日 2022-04-20 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.22 Å) 主引用文献 Molecular basis for cell-wall recycling regulation by transcriptional repressor MurR in Escherichia coli. Nucleic Acids Res., 50, 2022

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