PDB: 527 件ウェブページステータス検索Chemie searchBIRD

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7QGJ	Apo structure of BIR2 Domain of BIRC2 分子名称: 1,2-ETHANEDIOL, Baculoviral IAP repeat-containing protein 2, ZINC ION 著者 Kraemer, A, Farges, F, Schwalm, M.P, Saxena, K, Preuss, F, Knapp, S, Structural Genomics Consortium (SGC) 登録日 2021-12-08 公開日 2022-02-09 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 Apo structure BIR2 Domain of BIRC2 To Be Published
7QCA	Spraguea lophii ribosome 分子名称: 40S Ribosomal protein S19, 40S ribosomal protein S0, 40S ribosomal protein S10, ... 著者 Gil Diez, P, McLaren, M, Isupov, M.N, Daum, B, Conners, R, Williams, B. 登録日 2021-11-22 公開日 2022-11-30 最終更新日 2023-12-20 実験手法 ELECTRON MICROSCOPY (2.79 Å) 主引用文献 CryoEM reveals that ribosomes in microsporidian spores are locked in a dimeric hibernating state Nat Microbiol, 2023
6TIQ	Refined solution NMR structure of hVDAC-1 in detergent micelles 分子名称: Voltage-dependent anion-selective channel protein 1 著者 Boehm, R, Hiller, S, Wagner, G. 登録日 2019-11-22 公開日 2019-12-04 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 The Structural Basis for Low Conductance in the Membrane Protein VDAC upon beta-NADH Binding and Voltage Gating. Structure, 28, 2020
6TIR	NOE based model of hVDAC-1 bound to beta-NADH in detergent micelles 分子名称: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Voltage-dependent anion-selective channel protein 1 著者 Boehm, R, Hiller, S, Wagner, G. 登録日 2019-11-22 公開日 2019-12-04 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 The Structural Basis for Low Conductance in the Membrane Protein VDAC upon beta-NADH Binding and Voltage Gating. Structure, 28, 2020
7JFP	GTP-specific succinyl-CoA synthetase complexed with Mg-GDP, phosphohistidine loop pointing towards nucleotide binding site 分子名称: GLYCEROL, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ... 著者 Huang, J, Fraser, M.E. 登録日 2020-07-17 公開日 2021-03-10 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 Second distinct conformation of the phosphohistidine loop in succinyl-CoA synthetase Acta Crystallogr.,Sect.D, 77, 2021
7JKR	GTP-specific succinyl-CoA synthetase complexed with Mg-GMPPNP, phosphohistidine loop pointing towards nucleotide binding site 分子名称: GLYCEROL, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, ... 著者 Huang, J, Fraser, M.E. 登録日 2020-07-28 公開日 2021-03-10 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.64 Å) 主引用文献 Second distinct conformation of the phosphohistidine loop in succinyl-CoA synthetase Acta Crystallogr.,Sect.D, 77, 2021
7JJ0	GTP-specific succinyl-CoA synthetase complexed with Mg-GMPPCP 分子名称: MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER, Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, ... 著者 Huang, J, Fraser, M.E. 登録日 2020-07-24 公開日 2021-03-10 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Second distinct conformation of the phosphohistidine loop in succinyl-CoA synthetase Acta Crystallogr.,Sect.D, 77, 2021
6FGM	The NMR solution structure of the peptide AC12 from Hypsiboas raniceps 分子名称: ALA-CYS-PHE-LEU-THR-ARG-LEU-GLY-THR-TYR-VAL-CYS 著者 Popov, C.S.F.C, Simas, B.S, Goodfellow, B.J, Bocca, A.L, Andrade, P.B, Pereira, D, Valentao, P, Pereira, P.J.B, Rodrigues, J.E, Veloso Jr, P.H.H, Rezende, T.M.B. 登録日 2018-01-11 公開日 2019-01-09 最終更新日 2023-06-14 実験手法 SOLUTION NMR 主引用文献 Host-defense peptides AC12, DK16 and RC11 with immunomodulatory activity isolated from Hypsiboas raniceps skin secretion. Peptides, 113, 2019
6O8Q	HUaa 19bp SYM DNA pH 4.5 分子名称: DNA (57-MER), DNA-binding protein HU-alpha 著者 Remesh, S.G, Hammel, M. 登録日 2019-03-11 公開日 2020-03-18 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (3.216 Å) 主引用文献 Nucleoid remodeling during environmental adaptation is regulated by HU-dependent DNA bundling. Nat Commun, 11, 2020
6PV6	Functional Pathways of Biomolecules Retrieved from Single-particle Snapshots 分子名称: CALCIUM ION, Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 1, ... 著者 Dashti, A, des Georges, A, Frank, J, Ourmazd, A. 登録日 2019-07-19 公開日 2020-08-12 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (4.5 Å) 主引用文献 Retrieving functional pathways of biomolecules from single-particle snapshots. Nat Commun, 11, 2020
6OAJ	HUaE34K 19bp SYM DNA 分子名称: DNA (5'-D(P*CP*GP*GP*TP*TP*CP*AP*AP*TP*TP*GP*GP*CP*AP*CP*GP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*CP*GP*TP*GP*CP*CP*AP*AP*TP*TP*GP*AP*AP*CP*CP*GP*C)-3'), DNA-binding protein HU-alpha 著者 Remesh, S.G, Hammel, M. 登録日 2019-03-16 公開日 2020-03-18 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (4.092 Å) 主引用文献 Nucleoid remodeling during environmental adaptation is regulated by HU-dependent DNA bundling. Nat Commun, 11, 2020
6G6U	The dynamic nature of the VDAC1 channels in bilayers: human VDAC1 at 2.7 Angstrom resolution 分子名称: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, NITRATE ION, Voltage-dependent anion-selective channel protein 1 著者 Razeto, A, Gribbon, P, Loew, C. 登録日 2018-04-03 公開日 2019-04-10 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.74 Å) 主引用文献 The dynamic nature of the VDAC1 channels in bilayers as revealed by two crystal structures of the human isoform in bicelles at 2.7 and 3.3 Angstrom resolution: implications for VDAC1 voltage-dependent mechanism and for its oligomerization To Be Published
1MUL	Crystal structure of the E. coli HU alpha2 protein 分子名称: DNA binding protein HU-alpha 著者 Ramstein, J, Hervouet, N, Coste, F, Zelwer, C, Oberto, J, Castaing, B. 登録日 2002-09-24 公開日 2003-08-05 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Evidence of a Thermal Unfolding Dimeric Intermediate for the Escherichia coli Histone-like HU Proteins: Thermodynamics and Structure. J.Mol.Biol., 331, 2003
6G73	The dynamic nature of the VDAC1 channels in bilayers: human VDAC1 at 3.3 Angstrom resolution 分子名称: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, Voltage-dependent anion-selective channel protein 1 著者 Razeto, A, Gribbon, P, Loew, C. 登録日 2018-04-04 公開日 2019-04-24 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3.27 Å) 主引用文献 The dynamic nature of the VDAC1 channels in bilayers as revealed by two crystal structures of the human isoform in bicelles at 2.7 and 3.3 Angstrom resolution: implications for VDAC1 voltage-dependent mechanism and for its oligomerization To Be Published
1NI8	H-NS dimerization motif 分子名称: DNA-binding protein H-NS 著者 Bloch, V, Yang, Y, Margeat, E, Chavanieu, A, Aug, M.T, Robert, B, Arold, S, Rimsky, S, Kochoyan, M. 登録日 2002-12-22 公開日 2003-02-18 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 The H-NS dimerisation domain defines a new fold contributing to DNA recognition Nat.Struct.Biol., 10, 2003
6XRU	GTP-specific succinyl-CoA synthetase complexed with desulfo-coenzyme A, magnesium ions and succinates 分子名称: 1,2-ETHANEDIOL, DESULFO-COENZYME A, GLYCEROL, ... 著者 Huang, J, Fraser, M.E. 登録日 2020-07-13 公開日 2021-03-10 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Second distinct conformation of the phosphohistidine loop in succinyl-CoA synthetase Acta Crystallogr.,Sect.D, 77, 2021
6X8J	Caspase-7 in complex with ketomethylene inhibitor reveals tetrahedral adduct 分子名称: Caspase-7, ketomethylene inhibitor 著者 Solania, A, Xu, J.H, Wolan, D.W. 登録日 2020-06-01 公開日 2021-06-02 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.604 Å) 主引用文献 Caspase-7 in complex with ketomethylene inhibitor reveals tetrahedral adduct To Be Published
6X8L	Caspase-7 in complex with elongated ketomethylene inhibitor 分子名称: Caspase-7, ketomethylene inhibitor 著者 Solania, A, Xu, J.H, Wolan, D.W. 登録日 2020-06-01 公開日 2021-06-02 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Caspase-7 in complex with elongated ketomethylene inhibitor To Be Published
4C69	ATP binding to murine voltage-dependent anion channel 1 (mVDAC1). 分子名称: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE, ADENOSINE-5'-TRIPHOSPHATE, LAURYL DIMETHYLAMINE-N-OXIDE, ... 著者 Paz, A, Colletier, J.P, Abramson, J. 登録日 2013-09-17 公開日 2014-06-04 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.277 Å) 主引用文献 Structure-Guided Simulations Illuminate the Mechanism of ATP Transport Through Vdac1. Nat.Struct.Mol.Biol., 21, 2014
5K20	Caspase-7 S239E Phosphomimetic 分子名称: Caspase-7 large subunit, Caspase-7 small subunit, FORMIC ACID 著者 Eron, S.J, Hardy, J.A. 登録日 2016-05-18 公開日 2017-01-11 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 PAK2 Phosphorylation Inhibits Caspase-7 by Two Divergent Mechanisms: Slowing Activation and Blocking Substrate Binding To Be Published
6Z5T	SARS-CoV-2 Macrodomain in complex with ADP-ribose 分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, Replicase polyprotein 1ab, SODIUM ION 著者 Zorzini, V, Rack, J, Ahel, I. 登録日 2020-05-27 公開日 2020-12-02 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.571 Å) 主引用文献 Viral macrodomains: a structural and evolutionary assessment of the pharmacological potential. Open Biology, 10, 2020
5IMJ	Crystal structure of a Z-ring associated protein from Escherichia coli 分子名称: Cell division protein ZapD, SULFATE ION 著者 Choi, H, Yoon, H.J, Lee, H.H. 登録日 2016-03-06 公開日 2017-03-08 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Crystal structure of ZapD, a positive regulator of Z-ring formation during bacterial cytokinesis To Be Published
8GXD	L-LEUCINE DEHYDROGENASE FROM EXIGUOBACTERIUM SIBIRICUM 分子名称: CALCIUM ION, GLYCEROL, Glu/Leu/Phe/Val dehydrogenase 著者 Mu, X, Nie, Y, Wu, T, Wang, Y, Zhang, N, Yin, D, Xu, Y. 登録日 2022-09-19 公開日 2023-04-26 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3.02 Å) 主引用文献 Reshaping Substrate-Binding Pocket of Leucine Dehydrogenase for Bidirectionally Accessing Structurally Diverse Substrates Acs Catalysis, 13, 2023
6CL1	Caspase-7 in complex with Ac-DW3-KE 分子名称: ACE-1MH-ASP-B3L-PHE-1U8, Caspase-7 subunit p11, Caspase-7 subunit p20 著者 Solania, A.T, Gonzalez-Paez, G.E, Wolan, D.W. 登録日 2018-03-01 公開日 2019-03-06 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.651 Å) 主引用文献 Selective and Rapid Cell-Permeable Inhibitor of Human Caspase-3. Acs Chem.Biol., 14, 2019
5JDP	E73V mutant of the human voltage-dependent anion channel 分子名称: Voltage-dependent anion-selective channel protein 1 著者 Jaremko, M, Jaremko, L, Villinger, S, Schmidt, C, Giller, K, Griesinger, C, Becker, S, Zweckstetter, M. 登録日 2016-04-17 公開日 2016-08-10 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 High-Resolution NMR Determination of the Dynamic Structure of Membrane Proteins. Angew.Chem.Int.Ed.Engl., 55, 2016

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